Visualization and Analysis of MicroRNAs within KEGG Pathways using VANESA.

scientific article published on 13 June 2017

Visualization and Analysis of MicroRNAs within KEGG Pathways using VANESA. is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/jib/HamzeiySBJHA17
P356DOI10.1515/JIB-2016-0004
P932PMC publication ID6042802
P698PubMed publication ID28609293

P50authorHamid HamzeiyQ57997385
P2093author name stringJens Allmer
Ralf Hofestaedt
Christoph Brinkrolf
Rabia Suluyayla
Sebastian Jan Janowski
P2860cites workVANESA - a software application for the visualization and analysis of networks in system biology applications.Q51075270
Benchmark comparison of ab initio microRNA identification methods and software.Q51306663
Using the KEGG database resourceQ81131197
Cytoscape: a software environment for integrated models of biomolecular interaction networksQ24515682
MicroRNAs: target recognition and regulatory functionsQ24609584
miRTarBase: a database curates experimentally validated microRNA-target interactionsQ24613026
BRENDA, the enzyme information system in 2011Q24613881
miRBase: integrating microRNA annotation and deep-sequencing dataQ24615914
MicroRNA-373 induces expression of genes with complementary promoter sequencesQ24652547
PID: the Pathway Interaction DatabaseQ24656193
Combinatorial microRNA target predictionsQ27860510
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targetsQ27860792
MicroRNAs: genomics, biogenesis, mechanism, and functionQ27861070
CyTargetLinker: a cytoscape app to integrate regulatory interactions in network analysisQ27987806
Switching from repression to activation: microRNAs can up-regulate translationQ28131790
MicroRNA-10a binds the 5'UTR of ribosomal protein mRNAs and enhances their translationQ28281118
MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiationQ28294729
miTALOS: analyzing the tissue-specific regulation of signaling pathways by human and mouse microRNAsQ28387968
KEGG for integration and interpretation of large-scale molecular data setsQ29547277
Human Protein Reference Database--2009 updateQ29547392
BioDWH: a data warehouse kit for life science data integrationQ33529597
miRTar: an integrated system for identifying miRNA-target interactions in humanQ33972095
CluePedia Cytoscape plugin: pathway insights using integrated experimental and in silico dataQ34550500
miRGen: a database for the study of animal microRNA genomic organization and functionQ34572597
MicroRNAs involved in the mitogen-activated protein kinase cascades pathway during glucose-induced cardiomyocyte hypertrophyQ35167928
TarBase 6.0: capturing the exponential growth of miRNA targets with experimental supportQ35631073
DIANA-miRPath v3.0: deciphering microRNA function with experimental supportQ35810103
miTALOS v2: Analyzing Tissue Specific microRNA FunctionQ35964688
CyTRANSFINDER: a Cytoscape 3.3 plugin for three-component (TF, gene, miRNA) signal transduction pathway constructionQ35984089
CellMiner: a web-based suite of genomic and pharmacologic tools to explore transcript and drug patterns in the NCI-60 cell line set.Q36103111
DIANA-microT web server: elucidating microRNA functions through target predictionQ37245804
Multiple microRNAs modulate p21Cip1/Waf1 expression by directly targeting its 3' untranslated regionQ39733975
VANESA - A Software Application for the Visualization and Analysis of Networks in Systems Biology ApplicationsQ49999714
P275copyright licenseCreative Commons Attribution-NonCommercial-NoDerivs 3.0 UnportedQ19125045
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesSQLQ47607
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectmicroRNAQ310899
Kyoto Encyclopedia of Genes and GenomesQ909442
P6104maintained by WikiProjectWikiProject SoftwareQ15659621
P577publication date2017-06-13
P1433published inJournal of integrative bioinformaticsQ27722658
P1476titleVisualization and Analysis of MicroRNAs within KEGG Pathways using VANESA.
P478volume14

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Q88302085Computational miRNomics - Integrative Approachescites workP2860

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