Omics Profiling in Precision Oncology

scientific article published on 20 April 2016

Omics Profiling in Precision Oncology is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1074/MCP.O116.059253
P932PMC publication ID4974334
P698PubMed publication ID27099341

P50authorMichael P. SnyderQ28924918
P2093author name stringKun-Hsing Yu
P2860cites workThe Hallmarks of CancerQ221226
Predictive biomarkers: a paradigm shift towards personalized cancer medicineQ37921593
Personalized cancer medicine and the future of pathology.Q37965048
Principles and methods of integrative genomic analyses in cancerQ38206642
A genomics-based classification of human lung tumorsQ39123357
Vascular invasion in non-small cell lung carcinomaQ39403021
The IASLC Lung Cancer Staging Project: proposals for the revision of the TNM stage groupings in the forthcoming (seventh) edition of the TNM Classification of malignant tumoursQ39512984
Validation of interobserver agreement in lung cancer assessment: hematoxylin-eosin diagnostic reproducibility for non-small cell lung cancer: the 2004 World Health Organization classification and therapeutically relevant subsetsQ39617870
Metabolic profiling of human colorectal cancer using high-resolution magic angle spinning nuclear magnetic resonance (HR-MAS NMR) spectroscopy and gas chromatography mass spectrometry (GC/MS).Q39907905
ALK, ROS1 and RET rearrangements in lung squamous cell carcinoma are very rareQ39923537
Protein array technology to detect HER2 (erbB-2)-induced 'cytokine signature' in breast cancer.Q40155442
MET Tyrosine Kinase Inhibitor Crizotinib (PF-02341066) Shows Differential Antitumor Effects in Non-small Cell Lung Cancer According to MET AlterationsQ42731321
Potential of human saliva for nuclear magnetic resonance-based metabolomics and for health-related biomarker identificationQ43271462
Blood vessel invasion and expression of sialyl Lewisx and proliferating cell nuclear antigen in stage I non-small cell lung cancer. Relation to postoperative recurrenceQ50775156
Serine, but not glycine, supports one-carbon metabolism and proliferation of cancer cells.Q53052028
Chipping away at the lung cancer genomeQ54525027
A Prognostic DNA Methylation Signature for Stage I Non–Small-Cell Lung CancerQ57239837
Fractals and cancerQ74087944
Aberrant promoter methylation profile of prostate cancers and its relationship to clinicopathological featuresQ77626785
Identification of possible biomarkers for breast cancer from free fatty acid profiles determined by GC–MS and multivariate statistical analysisQ82394446
A novel grading system for clear cell renal cell carcinoma incorporating tumor necrosisQ85952835
Deep RNA sequencing analysis of readthrough gene fusions in human prostate adenocarcinoma and reference samplesQ21092937
Cancer as an evolutionary and ecological processQ22122026
Cancer genome landscapesQ22242276
Hallmarks of Cancer: The Next GenerationQ22252312
A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strandsQ24562877
HMDB 3.0--The Human Metabolome Database in 2013Q24595162
Differential oestrogen receptor binding is associated with clinical outcome in breast cancerQ24595511
RNA-Seq: a revolutionary tool for transcriptomicsQ24596169
Understanding the Warburg effect: the metabolic requirements of cell proliferationQ24604760
The Cancer Genome Atlas Pan-Cancer analysis projectQ24606808
Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasisQ24607308
Integrative analysis of the melanoma transcriptomeQ24608060
RNA-seq: an assessment of technical reproducibility and comparison with gene expression arraysQ24655562
Personalized cancer medicine: molecular diagnostics, predictive biomarkers, and drug resistanceQ26866517
Toward Precision MedicineQ27021937
Single molecule and single cell epigenomics.Q27026725
EGFR mutations in lung cancer: correlation with clinical response to gefitinib therapyQ27824812
Crizotinib versus chemotherapy in advanced ALK-positive lung cancer.Q27852316
Global cancer statistics, 2012Q27860501
Cancer statistics, 2015Q27860576
Chromatin modifications and their functionQ27861067
Metabolomics reviewed: a new "omics" platform technology for systems biology and implications for natural products research.Q36353799
Diagnostic agreement in the histopathological evaluation of lung cancer tissue in a population-based case-control studyQ36395796
Microarray analysis and tumor classificationQ36499716
Machine learning in bioinformaticsQ36500313
Metabolomics technology and bioinformaticsQ36505958
A new genome-driven integrated classification of breast cancer and its implicationsQ36664694
Translating insights from the cancer genome into clinical practiceQ37127235
Global levels of histone modifications predict prognosis in different cancersQ37164151
Epigenetic changes in cancerQ37288845
Gene-expression-based prognostic assays for breast cancerQ37741797
Immunologic biomarkers as correlates of clinical response to cancer immunotherapyQ37827418
Molecular classification of cancer: class discovery and class prediction by gene expression monitoringQ27861072
Mass spectrometry-based proteomicsQ28182890
Proteogenomic characterization of human colon and rectal cancerQ28244320
Comparison of network-based pathway analysis methodsQ28274818
Vemurafenib: the first drug approved for BRAF-mutant cancerQ28276886
Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortalQ28288215
Mapping of transcription factor binding regions in mammalian cells by ChIP: comparison of array- and sequencing-based technologiesQ28306149
Knowledge Discovery and interactive Data Mining in Bioinformatics--State-of-the-Art, future challenges and research directionsQ28654387
Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancerQ29547564
Gene-expression profiles predict survival of patients with lung adenocarcinomaQ29614443
Personal omics profiling reveals dynamic molecular and medical phenotypesQ29614800
ChIP-seq: advantages and challenges of a maturing technologyQ29615336
Cancer immunotherapy via dendritic cellsQ29615444
Ten years of pathway analysis: current approaches and outstanding challengesQ29615564
A new initiative on precision medicineQ29615654
The role of DNA methylation in mammalian epigeneticsQ29617979
RNA sequencing: advances, challenges and opportunitiesQ29619605
Cancer immunotherapy comes of ageQ29619918
From genomics to proteomicsQ30482453
International Cancer Genome Consortium Data Portal--a one-stop shop for cancer genomics dataQ30485151
Transcriptional data: a new gateway to drug repositioning?Q30557854
Outcome prediction in primary resected retroperitoneal soft tissue sarcoma: histology-specific overall survival and disease-free survival nomograms built on major sarcoma center data setsQ30607290
Predictive data mining in clinical medicine: current issues and guidelinesQ31088253
Mass spectrometry and protein analysisQ33239890
Reverse-phase protein lysate microarrays for cell signaling analysisQ33381529
An integrative -omics approach to identify functional sub-networks in human colorectal cancerQ33525505
Visualization of omics data for systems biologyQ33535721
The biology of ovarian cancer: new opportunities for translationQ33622369
Tumor heterogeneity: causes and consequencesQ33624298
RET fusion gene: translation to personalized lung cancer therapyQ33711282
Bayesian approach to transforming public gene expression repositories into disease diagnosis databasesQ33859264
Towards proteome standards: the use of absolute quantitation in high-throughput biomarker discoveryQ33912503
The current state of chromatin immunoprecipitationQ34092981
Antibody-based proteomics: fast-tracking molecular diagnostics in oncology.Q34132010
New driver mutations in non-small-cell lung cancerQ34161395
Criteria for the use of omics-based predictors in clinical trialsQ34269875
Targeting MET Amplification as a New Oncogenic Driver.Q34309927
Tumour heterogeneity in the clinicQ34372080
When tissue antigens and antibodies get along: revisiting the technical aspects of immunohistochemistry--the red, brown, and blue techniqueQ34377983
NMR and pattern recognition methods in metabolomics: from data acquisition to biomarker discovery: a reviewQ34444673
Neoantigens in cancer immunotherapy.Q34470074
The precision medicine initiative: a new national effortQ34474452
Microarray and histopathological analysis of tumours: the future and the past?Q34572102
Metabolomics: available results, current research projects in breast cancer, and future applications.Q34628323
Incidence and Prognostic Influence of DNMT3A Mutations in Acute Myeloid LeukemiaQ34630212
Metabolic profiling, metabolomic and metabonomic procedures for NMR spectroscopy of urine, plasma, serum and tissue extractsQ34714204
Identification of fusion genes in breast cancer by paired-end RNA-sequencingQ34964405
OMICS-based personalized oncology: if it is worth doing, it is worth doing well!Q35042467
Prioritization of cancer marker candidates based on the immunohistochemistry staining images deposited in the human protein atlasQ35058538
Emerging landscape of oncogenic signatures across human cancersQ35058708
Bioinformatics tools for cancer metabolomicsQ35163111
Methods and applications of antibody microarrays in cancer researchQ35574629
Personalized genomic analyses for cancer mutation discovery and interpretationQ35602861
ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experimentsQ35676599
Translating cancer 'omics' to improved outcomesQ35694365
Genome-scale analysis of aberrant DNA methylation in colorectal cancerQ35694387
ROS1 rearrangements in lung adenocarcinoma: prognostic impact, therapeutic options and genetic variabilityQ35833066
Targeted cancer therapyQ35953128
Protein microarrays as tools for functional proteomicsQ36034993
The future of genomics in pathologyQ36082163
Genetic Changes in Squamous Cell Lung Cancer: A ReviewQ36115735
Prognostic implications of cell cycle, apoptosis, and angiogenesis biomarkers in non-small cell lung cancer: a reviewQ36147654
A Functional Copy-Number Variation in MAPKAPK2 Predicts Risk and Prognosis of Lung CancerQ36152896
Genomic architecture and evolution of clear cell renal cell carcinomas defined by multiregion sequencingQ36256943
P433issue8
P304page(s)2525-2536
P577publication date2016-04-20
P1433published inMolecular & Cellular ProteomicsQ6895932
P1476titleOmics Profiling in Precision Oncology
P478volume15

Reverse relations

cites work (P2860)
Q50104991A roadmap towards personalized immunology.
Q51173657An integrated analysis identifies STAT4 as a key regulator of ovarian cancer metastasis
Q39426287Application of metabolomics in sarcoma: From biomarkers to therapeutic targets
Q57113927Applications of RNA Indexes for Precision Oncology in Breast Cancer
Q90254268Artificial intelligence in healthcare
Q45943784Association of Omics Features with Histopathology Patterns in Lung Adenocarcinoma.
Q92252361Autoimmune Effects of Lung Cancer Immunotherapy Revealed by Data-Driven Analysis on a Nationwide Cohort
Q62489264Computational Approaches in Theranostics: Mining and Predicting Cancer Data
Q50006534DNA-Targeted Precision Medicine; Have we Been Caught Sleeping?
Q41603225Exploitation of Gene Expression and Cancer Biomarkers in Paving the Path to Era of Personalized Medicine.
Q55402211Expression and network analysis of YBX1 interactors for identification of new drug targets in lung adenocarcinoma.
Q52373176Integrative omics for health and disease
Q28069660Metabolomics of Head and Neck Cancer: A Mini-Review
Q58569259Modified SureSelect Target Enrichment Protocol for Illumina Multiplexed Sequencing of FFPE Samples
Q45945277Omics AnalySIs System for PRecision Oncology (OASISPRO): A Web-based Omics Analysis Tool for Clinical Phenotype Prediction.
Q90355689Omics-based insights into therapy failure of pediatric B-lineage acute lymphoblastic leukemia
Q36396606Precision oncology based on omics data: The NCT Heidelberg experience
Q26741336Precision or Personalized Medicine for Cancer Chemotherapy: Is there a Role for Herbal Medicine
Q37188409Predicting non-small cell lung cancer prognosis by fully automated microscopic pathology image features
Q93166932Quantitative SWATH-Based Proteomic Profiling for Identification of Mechanism-Driven Diagnostic Biomarkers Conferring in the Progression of Metastatic Prostate Cancer
Q36264188Towards standardization of next-generation sequencing of FFPE samples for clinical oncology: intrinsic obstacles and possible solutions.

Search more.