Gene density and chromosome territory shape

scientific article

Gene density and chromosome territory shape is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1007/S00412-014-0480-Y
P8608Fatcat IDrelease_k55hfx3w2fg5jfzm2lso6owqr4
P932PMC publication ID5726871
P698PubMed publication ID25106753
P5875ResearchGate publication ID264629161

P2093author name stringAndrew J Fritz
Ronald Berezney
Jinhui Xu
Kristen Morris
Nitasha Sehgal
Zihe Chen
Irianna Torres
P2860cites workChromosome territories, nuclear architecture and gene regulation in mammalian cellsQ22122379
Interchromosomal associations between alternatively expressed lociQ22122480
Interchromosomal association and gene regulation in transQ22162506
Ensembl 2014Q24567767
Domain-wide regulation of gene expression in the human genomeQ24676961
The Human Y Chromosome: The Biological Role of a “Functional Wasteland”Q24803384
Tissue-specific spatial organization of genomesQ24805135
Domain organization of human chromosomes revealed by mapping of nuclear lamina interactionsQ28279406
The human transcriptome map: clustering of highly expressed genes in chromosomal domainsQ29622859
Chromosomes as well as chromosomal subdomains constitute distinct units in interphase nucleiQ30781702
Myc dynamically and preferentially relocates to a transcription factory occupied by IghQ33290425
Chromosome territories have a highly nonspherical morphology and nonrandom positioningQ33302140
Chromosome territoriesQ33693822
Differences in the localization and morphology of chromosomes in the human nucleus.Q33864702
Specific staining of human chromosomes in Chinese hamster x man hybrid cell lines demonstrates interphase chromosome territoriesQ34038721
Chromosome territories, interchromatin domain compartment, and nuclear matrix: an integrated view of the functional nuclear architectureQ34144018
Size-dependent positioning of human chromosomes in interphase nucleiQ34173406
Radial arrangement of chromosome territories in human cell nuclei: a computer model approach based on gene density indicates a probabilistic global positioning codeQ34185544
Thymidine analogues for tracking DNA synthesis.Q34216779
Unscheduled DNA synthesis after partial UV irradiation of the cell nucleus. Distribution in interphase and metaphaseQ34225919
Chromatin architecture of the human genome: gene-rich domains are enriched in open chromatin fibersQ34344656
Active genes dynamically colocalize to shared sites of ongoing transcriptionQ34347615
Chromosome territories--a functional nuclear landscape.Q34523990
Analysis of active and inactive X chromosome architecture reveals the independent organization of 30 nm and large-scale chromatin structuresQ34571021
Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensionsQ34603234
Regulating the mammalian genome: the role of nuclear architectureQ34747131
Functional architecture of the nucleus: organizing the regulatory machinery for gene expression, replication and repair.Q35565903
Spatial genome organizationQ35761807
The three-dimensional structure of human interphase chromosomes is related to the transcriptome map.Q35857089
Spatial positioning; a new dimension in genome functionQ35915886
Three-dimensional reconstruction of painted human interphase chromosomes: active and inactive X chromosome territories have similar volumes but differ in shape and surface structureQ36257706
Association of chromosome territories with the nuclear matrix. Disruption of human chromosome territories correlates with the release of a subset of nuclear matrix proteinsQ36293303
Delineation of individual human chromosomes in metaphase and interphase cells by in situ suppression hybridization using recombinant DNA librariesQ36438141
Application of confocal laser microscopy and three-dimensional Voronoi diagrams for volume and surface estimates of interphase chromosomesQ36700032
Differences of size and shape of active and inactive X-chromosome domains in human amniotic fluid cell nuclei.Q36767217
Nuclear microenvironments in biological control and cancer.Q36830704
Nuclear aggregation of olfactory receptor genes governs their monogenic expressionQ36859527
Chromatin dynamics and gene positioningQ37116198
Spatio-temporal dynamics of replication and transcription sites in the mammalian cell nucleusQ37302442
The Barr body is a looped X chromosome formed by telomere associationQ37548641
The architecture of functional neighborhoods within the mammalian cell nucleusQ37641448
The spatial organization of the human genomeQ38123221
The spatial organization of human chromosomes within the nuclei of normal and emerin-mutant cells.Q38494604
Alterations in replication timing of cancer-related genes in malignant human breast cancer cellsQ39242860
Stable morphology, but dynamic internal reorganisation, of interphase human chromosomes in living cellsQ39678226
A probabilistic model for the arrangement of a subset of human chromosome territories in WI38 human fibroblastsQ39841013
Cell type specific chromosome territory organization in the interphase nucleus of normal and cancer cellsQ39842808
Large-scale chromatin organization of the major histocompatibility complex and other regions of human chromosome 6 and its response to interferon in interphase nucleiQ40888834
Transcription factories are nuclear subcompartments that remain in the absence of transcriptionQ41816824
Individual interphase chromosome domains revealed by in situ hybridizationQ44890622
A top-down analysis of Xa- and Xi-territories reveals differences of higher order structure at ≥ 20 Mb genomic length scales.Q51406143
Spatio-temporal dynamics of genomic organization and function in the mammalian cell nucleus.Q51965078
Cell biology: chromosome territories.Q55042988
Shape ellipticity based on the first Hu moment invariantQ57936138
Notes on shape orientation where the standard method does not workQ57940102
Subchromosomal Positioning of the Epidermal Differentiation Complex (EDC) in Keratinocyte and Lymphoblast Interphase NucleiQ60611790
Visualization of interphase chromosomesQ67013895
Spatial distribution of GC- and AT-rich DNA sequences within human chromosome territoriesQ73492344
Morphology and dynamics of chromosome territories in living cellsQ74503669
P433issue5
P304page(s)499-513
P577publication date2014-08-09
P1433published inChromosomaQ15765851
P1476titleGene density and chromosome territory shape
P478volume123

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cites work (P2860)
Q41216041Changes in chromosome territory position within the nucleus reflect alternations in gene expression related to embryonic lineage specification
Q52691297Chromatin Architectural Changes during Cellular Senescence and Aging.
Q27311141Chromosome conformation of human fibroblasts grown in 3-dimensional spheroids.
Q91140229Chromosome territories and the global regulation of the genome
Q36470519Chromosomes at Work: Organization of Chromosome Territories in the Interphase Nucleus.
Q92379110Higher order genomic organization and epigenetic control maintain cellular identity and prevent breast cancer
Q36514617Large-scale probabilistic 3D organization of human chromosome territories
Q52814317Polymer models of the hierarchical folding of the Hox-B chromosomal locus.
Q89966192Radial Organization in the Mammalian Nucleus
Q35579821Structure of the DNA duplex d(ATTAAT)2 with Hoogsteen hydrogen bonds.
Q38401966Transcription-dependent radial distribution of TCF7L2 regulated genes in chromosome territories

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