| scholarly article | Q13442814 |
| P50 | author | Louis J. Guillette Jr | Q23018070 |
| Benedict Paten | Q62673564 | ||
| Cathy R Gresham | Q107290377 | ||
| Liana Lareau | Q59668364 | ||
| P2093 | author name string | David A Ray | |
| Roy N Platt | |||
| Richard E Green | |||
| Jonathan Howard | |||
| Son Pham | |||
| Fiona McCarthy | |||
| Jeremy R Sanford | |||
| Carl Schmidt | |||
| Joel Armstrong | |||
| John St John | |||
| Glenn Hickey | |||
| Satomi Kohno | |||
| Tan Phan | |||
| Alden Deran | |||
| Ian Fiddes | |||
| Colin Kern | |||
| Edward S Rice | |||
| David Haan | |||
| Brendan L O'Connell | |||
| P2860 | cites work | Automated generation of heuristics for biological sequence comparison | Q21061202 |
| TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions | Q21999527 | ||
| From the Cover: Location analysis of estrogen receptor alpha target promoters reveals that FOXA1 defines a domain of the estrogen response | Q24313831 | ||
| InterProScan 5: genome-scale protein function classification | Q24465930 | ||
| Direct interaction of SRY-related protein SOX9 and steroidogenic factor 1 regulates transcription of the human anti-Müllerian hormone gene | Q24522795 | ||
| Potential contributions of heat shock proteins to temperature-dependent sex determination in the American alligator | Q24634762 | ||
| Fast index based algorithms and software for matching position specific scoring matrices | Q24673775 | ||
| A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences | Q27860580 | ||
| International Union of Pharmacology. LXIV. Estrogen receptors | Q28276169 | ||
| Temperature of egg incubation determines sex in Alligator mississippiensis | Q28278020 | ||
| Is regulation of aromatase expression in reptiles the key to understanding temperature-dependent sex determination? | Q28289190 | ||
| Follistatin operates downstream of Wnt4 in mammalian ovary organogenesis | Q28510588 | ||
| Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs | Q28650295 | ||
| Vertebrate time-tree elucidates the biogeographic pattern of a major biotic change around the K-T boundary in Madagascar | Q28730594 | ||
| Meraculous: de novo genome assembly with short paired-end reads | Q28741309 | ||
| Phylogenomics of nonavian reptiles and the structure of the ancestral amniote genome | Q28763269 | ||
| An oestrogen-receptor-α-bound human chromatin interactome | Q29541719 | ||
| Differential analysis of gene regulation at transcript resolution with RNA-seq | Q29614490 | ||
| Genome-wide analysis of estrogen receptor binding sites | Q29614765 | ||
| Primer3--new capabilities and interfaces | Q29614816 | ||
| A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping | Q29615814 | ||
| Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation | Q29615949 | ||
| De novo identification of repeat families in large genomes | Q29617348 | ||
| Sex reversal triggers the rapid transition from genetic to temperature-dependent sex. | Q30978225 | ||
| Ragout-a reference-assisted assembly tool for bacterial genomes | Q31165967 | ||
| Sex reversal by estradiol in three reptilian orders | Q68504908 | ||
| Action of sex steroid hormones on temperature-induced sex determination in the snapping turtle (Chelydra serpentina) | Q69406610 | ||
| Regulated expression of Wnts and Frizzleds at specific stages of follicular development in the rodent ovary | Q77679057 | ||
| FUNC: a package for detecting significant associations between gene sets and ontological annotations | Q33272495 | ||
| Whole-genome cartography of estrogen receptor alpha binding sites | Q33286418 | ||
| MapMi: automated mapping of microRNA loci | Q33541234 | ||
| Estrogen receptor 1 (ESR1; ERα), not ESR2 (ERβ), modulates estrogen-induced sex reversal in the American alligator, a species with temperature-dependent sex determination | Q33569715 | ||
| SyMAP v3.4: a turnkey synteny system with application to plant genomes | Q33844616 | ||
| WNT4 is required for normal ovarian follicle development and female fertility. | Q34017075 | ||
| The Staurotypus turtles and aves share the same origin of sex chromosomes but evolved different types of heterogametic sex determination | Q34047301 | ||
| Molecular cloning of a cDNA showing alternative splicing of the 5'-untranslated sequence of mRNA for human aromatase P-450. | Q34061893 | ||
| Mechanisms of estrogen action | Q34093297 | ||
| CCCTC-binding factor acts upstream of FOXA1 and demarcates the genomic response to estrogen | Q34121216 | ||
| AUGUSTUS: ab initio prediction of alternative transcripts | Q34548015 | ||
| Vertebrate sex determination: many means to an end. | Q34934090 | ||
| Multiple lineages of ancient CR1 retroposons shaped the early genome evolution of amniotes | Q35047493 | ||
| Genome-wide CTCF distribution in vertebrates defines equivalent sites that aid the identification of disease-associated genes. | Q35384578 | ||
| Complex evolutionary trajectories of sex chromosomes across bird taxa | Q35518375 | ||
| miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades | Q35633577 | ||
| Anatomy of the estrogen response element | Q35703602 | ||
| Chromosome-scale shotgun assembly using an in vitro method for long-range linkage | Q35915257 | ||
| Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes | Q36331962 | ||
| TRPV4 associates environmental temperature and sex determination in the American alligator | Q36382597 | ||
| A Novel Candidate Gene for Temperature-Dependent Sex Determination in the Common Snapping Turtle | Q36875705 | ||
| Blurring the edges in vertebrate sex determination | Q37139870 | ||
| ChIP-Seq of ERalpha and RNA polymerase II defines genes differentially responding to ligands | Q37207706 | ||
| Steroid signaling and temperature-dependent sex determination-Reviewing the evidence for early action of estrogen during ovarian determination in turtles | Q37225092 | ||
| Cactus: Algorithms for genome multiple sequence alignment | Q38303696 | ||
| CCCTC-binding factor confines the distal action of estrogen receptor. | Q39923065 | ||
| HAL: a hierarchical format for storing and analyzing multiple genome alignments | Q40729029 | ||
| The influence of thermal signals during embryonic development on intrasexual and sexually dimorphic gene expression and circulating steroid hormones in American alligator hatchlings (Alligator mississippiensis). | Q46563415 | ||
| Developmental alterations as a result of in ovo exposure to the pesticide metabolite p,p'-DDE in Alligator mississippiensis | Q46660880 | ||
| Alligator aromatase cDNA sequence and its expression in embryos at male and female incubation temperatures | Q46879512 | ||
| Endothelial and steroidogenic cell migration are regulated by WNT4 in the developing mammalian gonad | Q47791457 | ||
| Follistatin specifically inhibits pituitary follicle stimulating hormone release in vitro. | Q48182160 | ||
| Incubation history prior to the canonical thermosensitive period determines sex in the American alligator. | Q50577380 | ||
| Genetic network underlying temperature-dependent sex determination is endogenously regulated by temperature in isolated cultured Trachemys scripta gonads. | Q50582850 | ||
| Differential incubation temperatures result in dimorphic DNA methylation patterning of the SOX9 and aromatase promoters in gonads of alligator (Alligator mississippiensis) embryos. | Q50709701 | ||
| Differential expression of genes for aromatase and estrogen receptor during the gonadal development in chicken embryos. | Q50889311 | ||
| P433 | issue | 5 | |
| P921 | main subject | Alligator | Q530397 |
| P304 | page(s) | 686-696 | |
| P577 | publication date | 2017-01-30 | |
| P1433 | published in | Genome Research | Q5533485 |
| P1476 | title | Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling | |
| P478 | volume | 27 |
| Q91844547 | A High-Quality Reference Genome Assembly of the Saltwater Crocodile, Crocodylus porosus, Reveals Patterns of Selection in Crocodylidae |
| Q64120048 | Divergent evolution in the genomes of closely related lacertids, Lacerta viridis and L. bilineata, and implications for speciation |
| Q33572055 | Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce |
| Q93019436 | Improving Illumina assemblies with Hi-C and long reads: An example with the North African dromedary |
| Q38610010 | Natural development of dermal ectopic bone in the American alligator (Alligator mississippiensis) resembles heterotopic ossification disorders in humans. |
| Q33622631 | New advances in sequence assembly |
| Q91791514 | Role for androgens in determination of ovarian fate in the common snapping turtle, Chelydra serpentina |
| Q64954252 | The origins and evolution of chromosomes, dosage compensation, and mechanisms underlying venom regulation in snakes. |
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