Substrate recognition and cleavage-site selection by a single-subunit protein-only RNase P.

scientific article published on 20 February 2016

Substrate recognition and cleavage-site selection by a single-subunit protein-only RNase P. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1093/NAR/GKW080
P932PMC publication ID4797305
P698PubMed publication ID26896801
P5875ResearchGate publication ID295398410

P50authorRoland HartmannQ69377900
P2093author name stringWalter Rossmanith
Markus Gößringer
Nadia Brillante
Ursula Toth
Dominik Lindenhofer
P2860cites workRNase P without RNA: identification and functional reconstitution of the human mitochondrial tRNA processing enzymeQ24311798
Structure of a bacterial ribonuclease P holoenzyme in complex with tRNAQ24595383
Eukaryotic RNase P RNA mediates cleavage in the absence of proteinQ24671843
Substrate discrimination in RNase P RNA-mediated cleavage: importance of the structural environment of the RNase P cleavage siteQ24791779
Structure of transfer RNAs: similarity and variabilityQ26824405
Mitochondrial ribonuclease P structure provides insight into the evolution of catalytic strategies for precursor-tRNA 5' processingQ27673406
WebLogo: A Sequence Logo GeneratorQ27860646
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal OmegaQ27860809
A subcomplex of human mitochondrial RNase P is a bifunctional methyltransferase--extensive moonlighting in mitochondrial tRNA biogenesisQ28118461
Unexpected diversity of RNase P, an ancient tRNA processing enzyme: challenges and prospectsQ37636822
Structure and function of the T-loop structural motif in noncoding RNAs.Q38113534
Cleavage efficiencies of model substrates for ribonuclease P from Escherichia coli and Thermus thermophilusQ40535577
Base pairing between Escherichia coli RNase P RNA and its substrateQ40793519
RNase P enzymes: divergent scaffolds for a conserved biological reaction.Q41895901
Evidence that substrate-specific effects of C5 protein lead to uniformity in binding and catalysis by RNase P.Q42740743
Nuclear pre-tRNA terminal structure and RNase P recognition.Q43206022
Minor changes largely restore catalytic activity of archaeal RNase P RNA from Methanothermobacter thermoautotrophicusQ43210575
Influence of metal ions on the ribonuclease P reaction. Distinguishing substrate binding from catalysisQ44346687
Distribution of Ribonucleoprotein and Protein-Only RNase P in Eukarya.Q44434425
Model substrates for an RNA enzymeQ45167887
Site selection by Xenopus laevis RNAase P.Q48292242
Exploring the minimal substrate requirements for trans-cleavage by RNase P holoenzymes from Escherichia coli and Bacillus subtilisQ49216964
Kinetics and thermodynamics of the RNase P RNA cleavage reaction: analysis of tRNA 3'-end variants.Q52507692
Differential role of the intermolecular base-pairs G292-C(75) and G293-C(74) in the reaction catalyzed by Escherichia coli RNase P RNA.Q52539516
Role of the D arm and the anticodon arm in tRNA recognition by eubacterial and eukaryotic RNase P enzymesQ53020154
Chloroplast ribonuclease P does not utilize the ribozyme-type pre-tRNA cleavage mechanismQ28143182
Playing RNase P evolution: swapping the RNA catalyst for a protein reveals functional uniformity of highly divergent enzyme formsQ28541679
Human mitochondrial tRNA processingQ28610237
Substrate recognition by human RNase P: identification of small, model substrates for the enzymeQ28610240
Compilation of tRNA sequences and sequences of tRNA genesQ29615891
tRNAdb 2009: compilation of tRNA sequences and tRNA genesQ29616661
Protein component of the ribozyme ribonuclease P alters substrate recognition by directly contacting precursor tRNAQ33573620
Protein-precursor tRNA contact leads to sequence-specific recognition of 5' leaders by bacterial ribonuclease PQ33690857
A single Arabidopsis organellar protein has RNase P activity.Q34022452
PRORP proteins support RNase P activity in both organelles and the nucleus in ArabidopsisQ34031731
A combinatorial amino acid code for RNA recognition by pentatricopeptide repeat proteins.Q34033268
Elucidation of the RNA recognition code for pentatricopeptide repeat proteins involved in organelle RNA editing in plantsQ34035957
Of proteins and RNA: the RNase P/MRP familyQ34075899
Plant mitochondria use two pathways for the biogenesis of tRNAHisQ34128030
Recognition of the 5' leader of pre-tRNA substrates by the active site of ribonuclease P.Q34365165
PlantRNA, a database for tRNAs of photosynthetic eukaryotesQ34445443
Two helices plus a linker: a small model substrate for eukaryotic RNase P.Q34486138
Cleavage of model substrates by archaeal RNase P: role of protein cofactors in cleavage-site selectionQ34559549
Expression, purification and characterization of the recombinant ribonuclease P protein component from Bacillus subtilisQ34670221
Multiple RNA processing defects and impaired chloroplast function in plants deficient in the organellar protein-only RNase P enzymeQ35582117
Mechanistic Studies Reveal Similar Catalytic Strategies for Phosphodiester Bond Hydrolysis by Protein-only and RNA-dependent Ribonuclease PQ35861007
Structural insights into protein-only RNase P complexed with tRNA.Q36582143
RNase P RNA mediated cleavage: substrate recognition and catalysisQ36877104
Nuclear RNase P of Trypanosoma brucei: a single protein in place of the multicomponent RNA-protein complexQ37254038
Pentatricopeptide repeats: modular blocks for building RNA-binding proteinsQ37381218
PPR proteins shed a new light on RNase P biologyQ37381221
The making of tRNAs and more - RNase P and tRNase Z.Q37392517
tRNA recognition, processing, and disease: hypotheses around an unorthodox type of RNase P in human mitochondriaQ37450182
tRNA processing by protein-only versus RNA-based RNase P: kinetic analysis reveals mechanistic differences.Q53145451
Evidence for induced fit in bacterial RNase P RNA-mediated cleavage.Q53532433
The exocyclic amine at the RNase P cleavage site contributes to substrate binding and catalysis.Q53625815
The 5' leader of precursor tRNAAsp bound to the Bacillus subtilis RNase P holoenzyme has an extended conformation.Q53645324
Pentatricopeptide repeat motifs in the processing enzyme PRORP1 in Arabidopsis thaliana play a crucial role in recognition of nucleotide bases at TψC loop in precursor tRNAs.Q54285328
RNase P of the Cyanophora paradoxa cyanelle: a plastid ribozyme.Q54434165
External Guide Sequences for an RNA EnzymeQ54709972
The Evolution of RNase P and Its RNAQ57441944
Effects of phosphorothioate modifications on precursor tRNA processing by eukaryotic RNase P enzymesQ73731044
Expression of mouse RNase MRP RNA in human embryonic kidney 293 cellsQ73952232
Effects of 5' leader and 3' trailer structures on pre-tRNA processing by nuclear RNase PQ74138440
Protein component of Bacillus subtilis RNase P specifically enhances the affinity for precursor-tRNAAspQ74252267
Role of metal ions in the hydrolysis reaction catalyzed by RNase P RNA from Bacillus subtilisQ77950084
5'-end maturation of tRNA in aquifex aeolicusQ80521776
P275copyright licenseCreative Commons Attribution-NonCommercial 4.0 InternationalQ34179348
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesImageQuantQ112270642
P433issue5
P407language of work or nameEnglishQ1860
P304page(s)2323-2336
P577publication date2016-02-20
P1433published inNucleic Acids ResearchQ135122
P1476titleSubstrate recognition and cleavage-site selection by a single-subunit protein-only RNase P.
P478volume44

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cites work (P2860)
Q38684465Biophysical analysis of Arabidopsis protein-only RNase P alone and in complex with tRNA provides a refined model of tRNA binding
Q36095934Cleavage of Model Substrates by Arabidopsis thaliana PRORP1 Reveals New Insights into Its Substrate Requirements
Q55668720Genetic editing and interrogation with Cpf1 and caged truncated pre-tRNA-like crRNA in mammalian cells.
Q26746979Mechanistic and Structural Studies of Protein-Only RNase P Compared to Ribonucleoproteins Reveal the Two Faces of the Same Enzymatic Activity
Q47600756Minimal and RNA-free RNase P in Aquifex aeolicus
Q47852259Molecular recognition of pre-tRNA by Arabidopsis protein-only Ribonuclease P.
Q40951694Protein-only RNase P function in Escherichia coli: viability, processing defects and differences between PRORP isoenzymes
Q26748917The Diversity of Ribonuclease P: Protein and RNA Catalysts with Analogous Biological Functions
Q28829668Use of chemical modification and mass spectrometry to identify substrate-contacting sites in proteinaceous RNase P, a tRNA processing enzyme

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