| scholarly article | Q13442814 |
| P50 | author | David von Stetten | Q47087372 |
| Daniel H. Murgida | Q51273556 | ||
| Katrina T. Forest | Q89722501 | ||
| Peter Hildebrandt | Q28735523 | ||
| Maria Andrea Mroginski | Q41660496 | ||
| P2093 | author name string | Richard D Vierstra | |
| Joseph M Walker | |||
| Junrui Zhang | |||
| Jeremiah R Wagner | |||
| Mina Günther | |||
| P2860 | cites work | Resonance raman analysis of chromophore structure in the lumi-R photoproduct of phytochrome | Q46204706 |
| Light-induced proton release of phytochrome is coupled to the transient deprotonation of the tetrapyrrole chromophore | Q46630021 | ||
| A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome | Q46808052 | ||
| Assembly of synthetic locked chromophores with agrobacterium phytochromes Agp1 and Agp2. | Q50730327 | ||
| The chromophore structural changes during the photocycle of phytochrome: a combined resonance Raman and quantum chemical approach. | Q51923431 | ||
| Highly conserved residues Asp-197 and His-250 in Agp1 phytochrome control the proton affinity of the chromophore and Pfr formation. | Q53511141 | ||
| Resonance Raman spectroscopic study of the tryptic 39-kDa fragment of phytochrome | Q57654221 | ||
| Protonation State and Structural Changes of the Tetrapyrrole Chromophore during the Pr→ PfrPhototransformation of Phytochrome: A Resonance Raman Spectroscopic Study† | Q57654232 | ||
| Serine-to-alanine substitutions at the amino-terminal region of phytochrome A result in an increase in biological activity | Q67599799 | ||
| Resonance Raman spectra of the intermediates in phototransformation of large phytochrome: deprotonation of the chromophore in the bleached intermediate | Q72719842 | ||
| Bacteriophytochromes: phytochrome-like photoreceptors from nonphotosynthetic eubacteria | Q73316575 | ||
| FTIR studies of phytochrome photoreactions reveal the C=O bands of the chromophore: consequences for its protonation states, conformation, and protein interaction | Q77320727 | ||
| High resolution structure of Deinococcus bacteriophytochrome yields new insights into phytochrome architecture and evolution | Q27643899 | ||
| Crystal structure of the chromophore binding domain of an unusual bacteriophytochrome, RpBphP3, reveals residues that modulate photoconversion | Q27646817 | ||
| The biliverdin chromophore binds covalently to a conserved cysteine residue in the N-terminus of Agrobacterium phytochrome Agp1 | Q28492368 | ||
| Phytochrome structure and signaling mechanisms. | Q30486809 | ||
| Probing protein-chromophore interactions in Cph1 phytochrome by mutagenesis | Q30814602 | ||
| First steps in the phytochrome phototransformation: a comparative femtosecond study on the forward (Pr --> Pfr) and back reaction (Pfr --> Pr). | Q30977761 | ||
| Genetic and molecular analysis of phytochromes from the filamentous fungus Neurospora crassa | Q34232866 | ||
| Multiple roles of a conserved GAF domain tyrosine residue in cyanobacterial and plant phytochromes | Q34293819 | ||
| Phytochrome photosensory signalling networks | Q34522847 | ||
| In vitro assembly of phytochrome B apoprotein with synthetic analogs of the phytochrome chromophore | Q34757212 | ||
| C-type cytochrome formation: chemical and biological enigmas | Q35989345 | ||
| Eukaryotic phytochromes: light-regulated serine/threonine protein kinases with histidine kinase ancestry | Q36817238 | ||
| Chromophore structure of the physiologically active form (P(fr)) of phytochrome | Q37617714 | ||
| Harnessing phytochrome's glowing potential | Q37713921 | ||
| Carboxy-terminal deletion analysis of oat phytochrome A reveals the presence of separate domains required for structure and biological activity | Q38319463 | ||
| Phylogenetic analysis of the phytochrome superfamily reveals distinct microbial subfamilies of photoreceptors | Q40726493 | ||
| Probing the photoreaction mechanism of phytochrome through analysis of resonance Raman vibrational spectra of recombinant analogues. | Q41723225 | ||
| Phytochrome Cph1 from the cyanobacterium Synechocystis PCC6803. Purification, assembly, and quaternary structure. | Q43725640 | ||
| Bacteriophytochromes are photochromic histidine kinases using a biliverdin chromophore | Q43822034 | ||
| Mechanism of Cph1 phytochrome assembly from stopped-flow kinetics and circular dichroism | Q44657969 | ||
| Photochromic biliproteins from the cyanobacterium Anabaena sp. PCC 7120: lyase activities, chromophore exchange, and photochromism in phytochrome AphA. | Q45045788 | ||
| Determination of the chromophore structures in the photoinduced reaction cycle of phytochrome | Q45196758 | ||
| P433 | issue | 18 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | Deinococcus radiodurans | Q386827 |
| mutational analysis | Q1955810 | ||
| P1104 | number of pages | 15 | |
| P304 | page(s) | 12212-12226 | |
| P577 | publication date | 2008-01-10 | |
| P1433 | published in | Journal of Biological Chemistry | Q867727 |
| P1476 | title | Mutational analysis of Deinococcus radiodurans bacteriophytochrome reveals key amino acids necessary for the photochromicity and proton exchange cycle of phytochromes | |
| P478 | volume | 283 |
| Q35031793 | "Turn-on" protein fluorescence: in situ formation of cyanine dyes |
| Q33891776 | A brief history of phytochromes |
| Q30360192 | A knot in the protein structure - probing the near-infrared fluorescent protein iRFP designed from a bacterial phytochrome. |
| Q42577982 | A polarity probe for monitoring light-induced structural changes at the entrance of the chromophore pocket in a bacterial phytochrome |
| Q30484273 | A second conserved GAF domain cysteine is required for the blue/green photoreversibility of cyanobacteriochrome Tlr0924 from Thermosynechococcus elongatus. |
| Q36423363 | Allosteric effects of chromophore interaction with dimeric near-infrared fluorescent proteins engineered from bacterial phytochromes. |
| Q27683806 | An improved monomeric infrared fluorescent protein for neuronal and tumour brain imaging |
| Q37495177 | Apo-bacteriophytochromes modulate bacterial photosynthesis in response to low light |
| Q55241763 | Asymmetric activation mechanism of a homodimeric red light-regulated photoreceptor. |
| Q35433889 | Atomic force microscopy of red-light photoreceptors using peakforce quantitative nanomechanical property mapping |
| Q41573558 | Bacterial Phytochromes, Cyanobacteriochromes and Allophycocyanins as a Source of Near-Infrared Fluorescent Probes. |
| Q37830693 | Bacterial phytochromes: more than meets the light |
| Q92412925 | Bacteriophytochromes - from informative model systems of phytochrome function to powerful tools in cell biology |
| Q34078020 | Biliverdin amides reveal roles for propionate side chains in bilin reductase recognition and in holophytochrome assembly and photoconversion. |
| Q24621011 | Bright and stable near-infrared fluorescent protein for in vivo imaging |
| Q37191930 | Bright monomeric near-infrared fluorescent proteins as tags and biosensors for multiscale imaging |
| Q35674544 | Characterization of two thermostable cyanobacterial phytochromes reveals global movements in the chromophore-binding domain during photoconversion |
| Q33446909 | Chromophore structure of cyanobacterial phytochrome Cph1 in the Pr state: reconciling structural and spectroscopic data by QM/MM calculations |
| Q27657253 | Conformational differences between the Pfr and Pr states in Pseudomonas aeruginosa bacteriophytochrome |
| Q27652212 | Crystal structure of Pseudomonas aeruginosa bacteriophytochrome: Photoconversion and signal transduction |
| Q27684509 | Crystal structure of the photosensing module from a red/far-red light-absorbing plant phytochrome |
| Q27684618 | Crystallographic and Electron Microscopic Analyses of a Bacterial Phytochrome Reveal Local and Global Rearrangements during Photoconversion |
| Q37447795 | Cyanochromes are blue/green light photoreversible photoreceptors defined by a stable double cysteine linkage to a phycoviolobilin-type chromophore |
| Q41528084 | Designing brighter near-infrared fluorescent proteins: insights from structural and biochemical studies. |
| Q91697197 | Distinct chromophore-protein environments enable asymmetric activation of a bacteriophytochrome-activated diguanylate cyclase |
| Q30487057 | Distinct classes of red/far-red photochemistry within the phytochrome superfamily |
| Q30356820 | Dynamic structural changes underpin photoconversion of a blue/green cyanobacteriochrome between its dark and photoactivated states. |
| Q33789962 | Engineering of a red-light-activated human cAMP/cGMP-specific phosphodiesterase. |
| Q36745290 | Engineering of bacterial phytochromes for near-infrared imaging, sensing, and light-control in mammals |
| Q37640884 | Eukaryotic algal phytochromes span the visible spectrum |
| Q48050519 | FRET in a Synthetic Flavin- and Bilin-binding Protein |
| Q34020471 | FTIR Spectroscopy Revealing Light-Dependent Refolding of the Conserved Tongue Region of Bacteriophytochrome |
| Q37111895 | Far-red light photoactivatable near-infrared fluorescent proteins engineered from a bacterial phytochrome |
| Q35896719 | Fast Photochemistry of Prototypical Phytochromes-A Species vs. Subunit Specific Comparison |
| Q42571161 | Fluorescence of phytochrome adducts with synthetic locked chromophores |
| Q45914123 | Fluorescence quantum yield and photochemistry of bacteriophytochrome constructs. |
| Q30383936 | From photon to signal in phytochromes: similarities and differences between prokaryotic and plant phytochromes. |
| Q90494776 | Genetically Encoded Fluorescent Biosensors Illuminate the Spatiotemporal Regulation of Signaling Networks |
| Q90321229 | High-resolution crystal structures of a myxobacterial phytochrome at cryo and room temperatures |
| Q38700642 | How to Increase Brightness of Near-Infrared Fluorescent Proteins in Mammalian Cells |
| Q64278423 | Influence of the N-terminal segment and the PHY-tongue element on light-regulation in bacteriophytochromes |
| Q41835899 | Interaction of Biliverdin Chromophore with Near-Infrared Fluorescent Protein BphP1-FP Engineered from Bacterial Phytochrome. |
| Q40942309 | Light-induced Changes in the Dimerization Interface of Bacteriophytochromes |
| Q43120266 | Light-induced activation of bacterial phytochrome Agp1 monitored by static and time-resolved FTIR spectroscopy |
| Q37725820 | Light-induced conformational changes of the chromophore and the protein in phytochromes: bacterial phytochromes as model systems. |
| Q24652377 | Mammalian expression of infrared fluorescent proteins engineered from a bacterial phytochrome |
| Q40199517 | Minimal domain of bacterial phytochrome required for chromophore binding and fluorescence. |
| Q46268214 | Modeling of phytochrome absorption spectra. |
| Q36341915 | Molecular Basis of Spectral Diversity in Near-Infrared Phytochrome-Based Fluorescent Proteins |
| Q30378057 | NMR chemical shift pattern changed by ammonium sulfate precipitation in cyanobacterial phytochrome Cph1. |
| Q52904756 | NMR spectroscopic investigation of mobility and hydrogen bonding of the chromophore in the binding pocket of phytochrome proteins. |
| Q54385554 | Near infrared fluorescent biliproteins generated from bacteriophytochrome AphB of Nostoc sp. PCC 7120. |
| Q91761084 | Near-Infrared Markers based on Bacterial Phytochromes with Phycocyanobilin as a Chromophore |
| Q59133449 | Near-infrared STED nanoscopy with an engineered bacterial phytochrome |
| Q36005927 | Near-infrared fluorescent proteins engineered from bacterial phytochromes |
| Q30368081 | NpR3784 is the prototype for a distinctive group of red/green cyanobacteriochromes using alternative Phe residues for photoproduct tuning. |
| Q57092273 | On the (un)coupling of the chromophore, tongue interactions, and overall conformation in a bacterial phytochrome |
| Q41469400 | On the origin of fluorescence in bacteriophytochrome infrared fluorescent proteins |
| Q34509776 | Origins of fluorescence in evolved bacteriophytochromes |
| Q42652544 | Photosensing and Thermosensing by Phytochrome B Require Both Proximal and Distal Allosteric Features within the Dimeric Photoreceptor |
| Q90601342 | Phytochrome evolution in 3D: deletion, duplication, and diversification |
| Q26996777 | Phytochromes: an atomic perspective on photoactivation and signaling |
| Q33927108 | Proton-transfer and hydrogen-bond interactions determine fluorescence quantum yield and photochemical efficiency of bacteriophytochrome |
| Q63610134 | Protonation of the Biliverdin IXα Chromophore in the Red and Far-Red Photoactive States of a Bacteriophytochrome |
| Q33934646 | Quaternary organization of a phytochrome dimer as revealed by cryoelectron microscopy |
| Q36316730 | Removal of Chromophore-Proximal Polar Atoms Decreases Water Content and Increases Fluorescence in a Near Infrared Phytofluor |
| Q33402467 | Residues clustered in the light-sensing knot of phytochrome B are necessary for conformer-specific binding to signaling partner PIF3. |
| Q27683575 | Signal amplification and transduction in phytochrome photosensors |
| Q55714906 | Small near-infrared photochromic protein for photoacoustic multi-contrast imaging and detection of protein interactions in vivo. |
| Q38065250 | Solid-state NMR spectroscopy to probe photoactivation in canonical phytochromes. |
| Q27651908 | Solution Structure of a Cyanobacterial Phytochrome GAF Domain in the Red-Light-Absorbing Ground State |
| Q48043325 | Spectroscopic Investigation on the Primary Photoreaction of Bathy Phytochrome Agp2-Pr of Agrobacterium fabrum: Isomerization in a pH-dependent H-bond Network |
| Q38788321 | Structural and Vibrational Characterization of the Chromophore Binding Site of Bacterial Phytochrome Agp1. |
| Q58693723 | Structural basis for light control of cell development revealed by crystal structures of a myxobacterial phytochrome |
| Q27658962 | Structural basis for the photoconversion of a phytochrome to the activated Pfr form |
| Q30313163 | Structural heterogeneity in a parent ground-state structure of AnPixJg2 revealed by theory and spectroscopy |
| Q42144097 | Structure of the biliverdin cofactor in the Pfr state of bathy and prototypical phytochromes |
| Q27676501 | Structure-guided Engineering Enhances a Phytochrome-based Infrared Fluorescent Protein |
| Q44107439 | Structure-guided engineering of plant phytochrome B with altered photochemistry and light signaling. |
| Q40456276 | The fungal phytochrome FphA from Aspergillus nidulans. |
| Q36955002 | The phytochrome red/far-red photoreceptor superfamily |
| Q38850025 | The role of local and remote amino acid substitutions for optimizing fluorescence in bacteriophytochromes: A case study on iRFP |
| Q64067978 | The unfolding of iRFP713 in a crowded milieu |
| Q64070955 | Time-Resolved Macromolecular Crystallography at Pulsed X-ray Sources |
| Q34652820 | Two ground state isoforms and a chromophore D-ring photoflip triggering extensive intramolecular changes in a canonical phytochrome |
| Q54374841 | Tyrosine 263 in cyanobacterial phytochrome Cph1 optimizes photochemistry at the prelumi-R→lumi-R step. |
| Q35922394 | Ultrafast excited-state dynamics and fluorescence deactivation of near-infrared fluorescent proteins engineered from bacteriophytochromes. |
Search more.