Evaluating feature-selection stability in next-generation proteomics

scientific article

Evaluating feature-selection stability in next-generation proteomics is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/jbcb/GohW16a
P356DOI10.1142/S0219720016500293
P8608Fatcat IDrelease_h6qcmjicsza73dakjkxpopcu7e
P698PubMed publication ID27640811

P50authorLimsoon WongQ41045443
Wilson GohQ57001122
P2860cites workConsiderations when using the significance analysis of microarrays (SAM) algorithmQ24815438
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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2Q29547403
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Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectraQ34405268
William Sealy Gosset and William A. Silverman: two "students" of scienceQ34448147
Enhancing the utility of Proteomics Signature Profiling (PSP) with Pathway Derived Subnets (PDSs), performance analysis and specialised ontologies.Q34549988
Test set bias affects reproducibility of gene signaturesQ35829697
Proteomics Signature Profiling (PSP): A Novel Contextualization Approach for Cancer ProteomicsQ36320993
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Comparative network-based recovery analysis and proteomic profiling of neurological changes in valproic acid-treated mice.Q37247740
Applying mass spectrometry-based proteomics to genetics, genomics and network biologyQ37581410
How advancement in biological network analysis methods empowers proteomicsQ37975999
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Comparative analysis of statistical methods used for detecting differential expression in label-free mass spectrometry proteomics.Q38982860
Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome mapsQ39404529
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The fickle P value generates irreproducible resultsQ41347775
CORUM: the comprehensive resource of mammalian protein complexesQ41902591
Finding consistent disease subnetworks using PFSNet.Q47825134
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Permutation P-values should never be zero: calculating exact P-values when permutations are randomly drawnQ51610576
Gene Selection for Cancer Classification using Support Vector MachinesQ56535529
P433issue5
P304page(s)1650029
P577publication date2016-08-03
P1433published inJournal of Bioinformatics and Computational BiologyQ6294841
P1476titleEvaluating feature-selection stability in next-generation proteomics
P478volume14

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cites work (P2860)
Q38846815Class-paired Fuzzy SubNETs: A paired variant of the rank-based network analysis family for feature selection based on protein complexes.
Q36258523Fuzzy-FishNET: a highly reproducible protein complex-based approach for feature selection in comparative proteomics
Q36268613GFS: fuzzy preprocessing for effective gene expression analysis.
Q94672464Optimized Mahalanobis-Taguchi System for High-Dimensional Small Sample Data Classification
Q36329452Protein complex-based analysis is resistant to the obfuscating consequences of batch effects --- a case study in clinical proteomics.

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