Discovery of an expanded set of avian leukosis subroup E proviruses in chickens using Vermillion, a novel sequence capture and analysis pipeline

scientific article published on 27 June 2016

Discovery of an expanded set of avian leukosis subroup E proviruses in chickens using Vermillion, a novel sequence capture and analysis pipeline is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.3382/PS/PEW194
P698PubMed publication ID27354549

P50authorMorgan LangilleQ53584922
P2093author name stringC J Meehan
K Rutherford
R G Beiko
B Benkel
J C McKay
K Benkel
N L McLean
S G Tyack
P2860cites workHaploinsufficiency of SOX5 at 12p12.1 is associated with developmental delays with prominent language delay, behavior problems, and mild dysmorphic featuresQ36746454
Which transposable elements are active in the human genome?Q36748700
Insertional polymorphisms: a new lease of life for endogenous retroviruses in human disease.Q36831322
Proviral integrations and expression of endogenous avian leucosis virus during long term selection for high and low body weight in two chicken linesQ37278730
Biology and evolution of the endogenous koala retrovirusQ37279895
Effects of genetic strain, slow versus rapid-feathering maternal genotype, and cage density on the performance of Single Comb White LeghornsQ38474376
Association of the slow feathering (K) and an endogenous viral (ev21) gene on the Z chromosome of chickens.Q38475600
The distribution of endogenous chicken retrovirus sequences in the DNA of galliform birds does not coincide with avian phylogenetic relationshipsQ40251493
Quantitative effects of an intronic retroviral insertion on the transcription of the tyrosinase gene in recessive white chickens.Q42168750
Characterization of insertion sites and development of locus-specific assays for three broiler-derived subgroup E avian leukosis virus provirusesQ42288601
Endogenous Viral Genes: Association with Reduced Egg Production Rate and Egg Size in White LeghornsQ45288643
Novel avian leukosis virus-related endogenous proviruses from layer chickens: characterization and development of locus-specific assaysQ45382941
Endogenous viral genes influence infection with avian leukosis virusQ45392754
Modeling as a research tool in poultry scienceQ46913946
Incidence of endogenous viral genes in two strains of white leghorn chickens selected for egg production and susceptibility or resistance to Marek's diseaseQ47720755
Nucleotide sequence of acceptor site and termini of integrated avian endogenous provirus ev1: Integration creates a 6 bp repeat of host DNAQ48411388
Initial sequencing and analysis of the human genomeQ21045365
The discovery of endogenous retrovirusesQ21245201
Complete association between a retroviral insertion in the tyrosinase gene and the recessive white mutation in chickensQ21266588
Hot L1s account for the bulk of retrotransposition in the human populationQ22066292
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolutionQ22122484
Initial sequencing and comparative analysis of the mouse genomeQ22122521
Genomewide screening reveals high levels of insertional polymorphism in the human endogenous retrovirus family HERV-K(HML2): implications for present-day activityQ24533331
MUSCLE: multiple sequence alignment with high accuracy and high throughputQ24613456
Retroviral elements and their hosts: insertional mutagenesis in the mouse germ lineQ25255710
Basic local alignment search toolQ25938991
Unfixed endogenous retroviral insertions in the human populationQ28654487
Pushing the endogenous envelopeQ28681313
Unexpected diversity and expression of avian endogenous retrovirusesQ28714401
High-throughput sequencing reveals extensive variation in human-specific L1 content in individual human genomesQ28749562
One subspecies of the red junglefowl (Gallus gallus gallus) suffices as the matriarchic ancestor of all domestic breedsQ28775910
Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencingQ29614576
RetroSeq: transposable element discovery from next-generation sequencing dataQ30581268
Genome-wide assessments reveal extremely high levels of polymorphism of two active families of mouse endogenous retroviral elementsQ33331558
Copy number variation in intron 1 of SOX5 causes the Pea-comb phenotype in chickensQ33466726
Targeted exon sequencing by in-solution hybrid selectionQ33617969
SLOPE: a quick and accurate method for locating non-SNP structural variation from targeted next-generation sequence dataQ33704815
Mammalian retroelements.Q34153259
Tangram: a comprehensive toolbox for mobile element insertion detectionQ34270708
Retroelements and formation of chimeric retrogenesQ35865791
Endogenous retroviruses of the chicken genomeQ36579176
Characterization of a solitary long terminal repeat of avian endogenous virus originQ36613030
P433issue10
P1104number of pages9
P304page(s)2250-2258
P577publication date2016-06-27
P1433published inPoultry ScienceQ1999242
P1476titleDiscovery of an expanded set of avian leukosis subroup E proviruses in chickens using Vermillion, a novel sequence capture and analysis pipeline
P478volume95

Reverse relations

Q37740188Domestic chickens activate a piRNA defense against avian leukosis viruscites workP2860

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