Novel diagnostic algorithm for identification of mycobacteria using genus-specific amplification of the 16S-23S rRNA gene spacer and restriction endonucleases.

scientific article

Novel diagnostic algorithm for identification of mycobacteria using genus-specific amplification of the 16S-23S rRNA gene spacer and restriction endonucleases. is …
instance of (P31):
scholarly articleQ13442814

External links are
P932PMC publication ID86348
P698PubMed publication ID10699003

P2093author name stringA Roth
L Naumann
R M Kroppenstedt
U Reischl
M Fischer
H Mauch
A Streubel
M Habicht
P2860cites workMycobacterium hassiacum sp. nov., a new rapidly growing thermophilic mycobacteriumQ28301342
Heterogeneity and clonality among isolates of Mycobacterium kansasii: implications for epidemiological and pathogenicity studiesQ28776791
Improved identification of mycobacteria by using the microbial identification system in combination with additional trimethylsulfonium hydroxide pyrolysis.Q32038840
Separation among species of Mycobacterium terrae complex by lipid analyses: comparison with biochemical tests and 16S rRNA sequencing.Q33656770
Routine use of PCR-reverse cross-blot hybridization assay for rapid identification of Mycobacterium species growing in liquid media.Q33668698
hsp65 sequencing for identification of rapidly growing mycobacteria.Q33959474
Identification of mycobacterial species by comparative sequence analysis of the RNA polymerase gene (rpoB).Q33960731
Identification of Mycobacterium kansasii by using a DNA probe (AccuProbe) and molecular techniquesQ33974531
Epidemiology of infection by nontuberculous mycobacteriaQ35370226
Sequence-based differentiation of strains in the Mycobacterium avium complexQ36099939
PCR amplification and restriction endonuclease analysis of a 65-kilodalton heat shock protein gene sequence for taxonomic separation of rapidly growing mycobacteria.Q36517277
Detection and identification of mycobacteria by DNA amplification and oligonucleotide-specific capture plate hybridization.Q36525931
PCR assay based on DNA coding for 16S rRNA for detection and identification of mycobacteria in clinical samplesQ36526605
Rapid identification of mycobacteria to species level by PCR-restriction fragment length polymorphism analysis of the hsp65 gene and proposition of an algorithm to differentiate 34 mycobacterial speciesQ36547680
Rapid identification of mycobacteria to the species level by polymerase chain reaction and restriction enzyme analysisQ37063358
Clinical application of PCR-restriction enzyme pattern analysis for rapid identification of aerobic actinomycete isolates.Q38554147
Rapid identification of clinically significant species and taxa of aerobic actinomycetes, including Actinomadura, Gordona, Nocardia, Rhodococcus, Streptomyces, and Tsukamurella isolates, by DNA amplification and restriction endonuclease analysisQ38557949
Two-laboratory collaborative study on identification of mycobacteria: molecular versus phenotypic methods.Q38562266
Mycobacterium species identification and rifampin resistance testing with high-density DNA probe arrays.Q39445682
Differentiation of phylogenetically related slowly growing mycobacteria based on 16S-23S rRNA gene internal transcribed spacer sequencesQ39643136
Opportunistic pathogens in the genus MycobacteriumQ39833885
Genotypic characterization of five subspecies of Mycobacterium kansasiiQ40012652
Routine use of PCR-restriction fragment length polymorphism analysis for identification of mycobacteria growing in liquid mediaQ40012686
Genotypic identification of mycobacteria by nucleic acid sequence determination: report of a 2-year experience in a clinical laboratory.Q40190786
Mycobacterial taxonomyQ40494900
Recent changes in taxonomy and disease manifestations of the rapidly growing mycobacteriaQ40494955
New approaches to typing and identification of bacteria using the 16S-23S rDNA spacer regionQ40958469
Ribosomal internal transcribed spacer sequences are identical among Mycobacterium avium-intracellulare complex isolates from AIDS patients, but vary among isolates from elderly pulmonary disease patientsQ48070228
Molecular phylogeny of the Mycobacterium avium complex demonstrates clinically meaningful divisionsQ48085393
[Photochromogenic strains of Mycobacterium gastri?]Q69931914
Differentiation of Mycobacterium species by restriction enzyme analysis of amplified 16S-23S ribosomal DNA spacer sequencesQ71398425
Molecular basis for cross-reactivity between a strain ofMycobacterium terrae and DNA probes forMycobacterium tuberculosis complexQ71814557
P433issue3
P407language of work or nameEnglishQ1860
P921main subjectdiagnosisQ16644043
P304page(s)1094-1104
P577publication date2000-03-01
P1433published inJournal of Clinical MicrobiologyQ4041880
P1476titleNovel diagnostic algorithm for identification of mycobacteria using genus-specific amplification of the 16S-23S rRNA gene spacer and restriction endonucleases
P478volume38

Reverse relations

cites work (P2860)
Q386720071,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life
Q2882189016S-23S Internal Transcribed Spacer Region PCR and Sequencer-Based Capillary Gel Electrophoresis has Potential as an Alternative to High Performance Liquid Chromatography for Identification of Slowly Growing Nontuberculous Mycobacteria
Q38900297A genotypic approach for detection, identification, and characterization of drug resistance in Mycobacterium ulcerans in clinical samples and isolates from Ghana
Q28297048Amoebal coculture of "Mycobacterium massiliense" sp. nov. from the sputum of a patient with hemoptoic pneumonia
Q35073373An outbreak of keratitis caused by Mycobacterium immunogenum
Q30664595Burden of unidentifiable mycobacteria in a reference laboratory.
Q28202858Characterization of Mycobacterium montefiorense sp. nov., a Novel Pathogenic Mycobacterium from Moray Eels That Is Related to Mycobacterium triplex
Q47563904Characterization of non-tuberculous mycobacterium from humans and water in an Agropastoral area in Zambia
Q26740428Clinical and laboratory diagnosis of buruli ulcer disease: A systematic review
Q35361550Clinical manifestations, diagnosis, and treatment of Mycobacterium haemophilum infections
Q37256372Cohort study of molecular identification and typing of Mycobacterium abscessus, Mycobacterium massiliense, and Mycobacterium bolletii.
Q31071504Combined rpoB duplex PCR and hsp65 PCR restriction fragment length polymorphism with capillary electrophoresis as an effective algorithm for identification of mycobacterial species from clinical isolates
Q37470276Comparison of 14 molecular assays for detection of Mycobacterium tuberculosis complex in bronchoalveolar lavage fluid.
Q34041854Computational approach involving use of the internal transcribed spacer 1 region for identification of Mycobacterium species.
Q36825115Cytomegalovirus and Epstein-Barr virus in breast milk are associated with HIV-1 shedding but not with mastitis
Q42698590Description of Mycobacterium heckeshornense sp. nov.
Q34196473Detection of Mycobacterium avium in blood samples of patients with AIDS by using PCR
Q34298132Detection of Mycobacterium leprae by PCR testing of sputa from a patient with pulmonary cryptococcus coinfection in northern Australia
Q37853873Detection of bacterial endosymbionts in clinical acanthamoeba isolates
Q41158665Development of a novel PCR restriction analysis of the hsp65 gene as a rapid method to screen for the Mycobacterium tuberculosis complex and nontuberculous mycobacteria in high-burden countries
Q24682106Differentiation between Mycobacterium farcinogenes and Mycobacterium senegalense strains based on 16S-23S ribosomal DNA internal transcribed spacer sequences
Q64991441Disseminated mycobacteriosis caused by Mycobacterium kansasii in a pot-bellied pig.
Q37362231Distribution and genetic characterization of Mycobacterium chelonae in laboratory zebrafish Danio rerio
Q37713488Distribution of nontuberculous mycobacteria by multigene sequence-based typing and clinical significance of isolated strains
Q31110037Diversity of environmental Mycobacterium isolates from hemodialysis water as shown by a multigene sequencing approach
Q40883658Draft Genome Sequences of Three Mycobacterium chimaera Respiratory Isolates.
Q38375318Evaluation of GenoType NTM-DR Assay for Identification of Mycobacterium chimaera
Q24805974Evaluation of amplified rDNA restriction analysis (ARDRA) for the identification of cultured mycobacteria in a diagnostic laboratory
Q34195348Evaluation of genotype and LiPA MYCOBACTERIA assays for identification of Finnish mycobacterial isolates
Q55519190Evaluation of the VITEK MS knowledge base version 3.0 for the identification of clinically relevant Mycobacterium species.
Q41965295Evaluation of the invader assay with the BACTEC MGIT 960 system for prompt isolation and identification of mycobacterial species from clinical specimens
Q40309028Exposure of Threatened Accipitridae to Mycobacterium bovis Calls for Active Surveillance.
Q34123909First description of natural and experimental conjugation between Mycobacteria mediated by a linear plasmid.
Q28538008First evaluation of drug-resistant Mycobacterium tuberculosis clinical isolates from Congo revealed misdetection of fluoroquinolone resistance by line probe assay due to a double substitution T80A-A90G in GyrA
Q42031953Granulomatous hypophysitis by Mycobacterium gordonae in a non HIV-infected patient
Q39052409Heterogeneity of Iranian clinical isolates of Mycobacterium fortuitum
Q46251464High rates of nontuberculous mycobacteria isolation from patients with presumptive tuberculosis in Iran
Q33973099Identification of 54 mycobacterial species by PCR-restriction fragment length polymorphism analysis of the hsp65 gene.
Q34774652Identification of mycobacterial species by PCR sequencing of quinolone resistance-determining regions of DNA gyrase genes.
Q24682974Impact of Genotypic Studies on Mycobacterial Taxonomy: the New Mycobacteria of the 1990s
Q37062182Implementation of a Zebrafish Health Program in a Research Facility: A 4-Year Retrospective Study.
Q35205289Improved identification of rapidly growing mycobacteria by a 16S-23S internal transcribed spacer region PCR and capillary gel electrophoresis.
Q42620921Improved performance of the artus Mycobacterium tuberculosis RG PCR kit in a low incidence setting: a retrospective monocentric study.
Q33885049Intra- and interpatient variability of the hsp65 and 16S-23S intergenic gene region in Mycobacterium abscessus strains from patients with cystic fibrosis
Q30406048Management of nontuberculous mycobacterial infection in the elderly
Q41828908Molecular Identification of Rare Clinical Mycobacteria by Application of 16S-23S Spacer Region Sequencing
Q35793970Molecular analysis of clinical isolates previously diagnosed as Mycobacterium intracellulare reveals incidental findings of "Mycobacterium indicus pranii" genotypes in human lung infection
Q34721555Molecular characterization of a novel fastidious mycobacterium causing lepromatous lesions of the skin, subcutis, cornea, and conjunctiva of cats living in Victoria, Australia
Q34653656Molecular epidemiology of nontuberculous mycobacteria isolates from clinical and environmental sources of a metropolitan city.
Q34996444Molecular identification of non-tuberculous mycobacteria isolated from clinical specimens in Zambia
Q36239033Molecular identification of nontuberculous mycobacteria isolated from pyogenic bovine tissues in South Darfur State and Alsabalouga slaughterhouse at Omdurman area, Sudan
Q28830823Mycobacteriosis in zebrafish colonies
Q34010278Mycobacterium chelonae-abscessus complex associated with sinopulmonary disease, Northeastern USA.
Q42547107Mycobacterium haemophilum: emerging or underdiagnosed in Brazil?
Q30619266Mycobacterium heckeshornense sp. nov., A new pathogenic slowly growing Mycobacterium sp. Causing cavitary lung disease in an immunocompetent patient.
Q35946828Mycobacterium parascrofulaceum in acidic hot springs in Yellowstone National Park
Q30992925Mycobacterium saopaulense sp. nov., a rapidly growing mycobacterium closely related to members of the Mycobacterium chelonae--Mycobacterium abscessus group
Q35133550Mycobacterium ulcerans persistence at a village water source of Buruli ulcer patients
Q33909513Natural occurrence of horizontal transfer of Mycobacterium avium- specific insertion sequence IS1245 to Mycobacterium kansasii
Q90017936Nontuberculous mycobacteria in drinking water systems - the challenges of characterization and risk mitigation
Q39751042Novel algorithm identifies species in a polymycobacterial sample by fluorescence capillary electrophoresis-based single-strand conformation polymorphism analysis
Q33365222Occurrence and clinical relevance of Mycobacterium chimaera sp. nov., Germany
Q34456048Phenotypic and molecular characterization of clinical isolates of Mycobacterium elephantis from human specimens
Q36933397Proportions of Mycobacterium massiliense and Mycobacterium bolletii strains among Korean Mycobacterium chelonae-Mycobacterium abscessus group isolates
Q33972982Pulmonary infection caused by an unusual, slowly growing nontuberculous Mycobacterium
Q24797606RIDOM: comprehensive and public sequence database for identification of Mycobacterium species
Q39695282Rapid and specific detection of Mycobacterium tuberculosis from acid-fast bacillus smear-positive respiratory specimens and BacT/ALERT MP culture bottles by using fluorogenic probes and real-time PCR.
Q33974339Rapid identification of Mycobacteria to the species level using INNO-LiPA Mycobacteria, a reverse hybridization assay
Q43248350Rapid identification of mycobacteria from smear-positive sputum samples by nested PCR-restriction fragment length polymorphism analysis
Q34782239Real-time PCR assay using fine-needle aspirates and tissue biopsy specimens for rapid diagnosis of mycobacterial lymphadenitis in children.
Q33325708Reliable identification of mycobacterial species by PCR-restriction enzyme analysis (PRA)-hsp65 in a reference laboratory and elaboration of a sequence-based extended algorithm of PRA-hsp65 patterns.
Q37248669Sensitive diagnosis of bovine tuberculosis in a farmed cervid herd with use of an MPB70 protein fluorescence polarization assay.
Q39466670Simple and rational approach to the identification of Mycobacterium tuberculosis, Mycobacterium avium complex species, and other commonly isolated mycobacteria
Q35757639Two Rapidly Growing Mycobacterial Species Isolated from a Brain Abscess: First Whole-Genome Sequences of Mycobacterium immunogenum and Mycobacterium llatzerense
Q35680325Two-Year Monitoring of Water Samples from Dam of Iskar and the Black Sea, Bulgaria, by Molecular Analysis: Focus on Mycobacterium spp.
Q35073642Use of PCR and reverse line blot hybridization macroarray based on 16S-23S rRNA gene internal transcribed spacer sequences for rapid identification of 34 mycobacterium species
Q33217132Use of the INNO-LiPA-MYCOBACTERIA assay (version 2) for identification of Mycobacterium avium-Mycobacterium intracellulare-Mycobacterium scrofulaceum complex isolates
Q64056565Variation among human, veterinary and environmental Mycobacterium chelonae-abscessus complex isolates observed using core genome phylogenomic analysis, targeted gene comparison, and anti-microbial susceptibility patterns

Search more.