Protein-coding cis-natural antisense transcripts have high and broad expression in Arabidopsis

scientific article published on March 2013

Protein-coding cis-natural antisense transcripts have high and broad expression in Arabidopsis is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1104/PP.112.212100
P932PMC publication ID3613485
P698PubMed publication ID23457227
P5875ResearchGate publication ID235778186

P2093author name stringLewis Lukens
Shuhua Zhan
P2860cites workThe spen family protein FPA controls alternative cleavage and polyadenylation of RNA.Q53348104
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Integrative analysis of chromatin states in Arabidopsis identified potential regulatory mechanisms for natural antisense transcript productionQ38495115
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Arabidopsis transcriptome analysis under drought, cold, high-salinity and ABA treatment conditions using a tiling arrayQ39225436
Epigenetic silencing of the c-fms locus during B-lymphopoiesis occurs in discrete steps and is reversible.Q40253222
Characterization of 43 non-protein-coding mRNA genes in Arabidopsis, including the MIR162a-derived transcripts.Q42681189
Genome-wide profiling of histone H3 lysine 9 acetylation and dimethylation in Arabidopsis reveals correlation between multiple histone marks and gene expressionQ43200920
Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb targetQ45101053
Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thalianaQ21184167
Mapping and quantifying mammalian transcriptomes by RNA-SeqQ22122035
Over 20% of human transcripts might form sense-antisense pairsQ24564527
Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in ArabidopsisQ24632891
Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretaseQ24643985
A pathogen-inducible endogenous siRNA in plant immunityQ24674650
Genome-wide in silico identification and analysis of cis natural antisense transcripts (cis-NATs) in ten speciesQ24685558
Genetic and functional diversification of small RNA pathways in plantsQ24797901
Natural antisense transcripts with coding capacity in Arabidopsis may have a regulatory role that is not linked to double-stranded RNA degradationQ24812486
Whole-genome analysis of histone H3 lysine 27 trimethylation in ArabidopsisQ28469184
Natural antisense transcript stabilizes inducible nitric oxide synthase messenger RNA in rat hepatocytesQ28571040
Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responsesQ28755945
Genome-wide profiling and analysis of Arabidopsis siRNAsQ28763211
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Long noncoding RNAs with enhancer-like function in human cellsQ29614328
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Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis.Q30481382
Genome-wide analysis of plant nat-siRNAs reveals insights into their distribution, biogenesis and function.Q30524875
Non-random retention of protein-coding overlapping genes in MetazoaQ33328657
SINE RNA induces severe developmental defects in Arabidopsis thaliana and interacts with HYL1 (DRB1), a key member of the DCL1 complexQ33343443
Dynamic regulation of H3K27 trimethylation during Arabidopsis differentiationQ33350982
Genome-wide mapping of alternative splicing in Arabidopsis thalianaQ33560271
Proper regulation of a sperm-specific cis-nat-siRNA is essential for double fertilization in ArabidopsisQ33839569
DICER-LIKE 4 functions in trans-acting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thalianaQ33944055
Clustering of housekeeping genes provides a unified model of gene order in the human genomeQ34126902
Active genes dynamically colocalize to shared sites of ongoing transcriptionQ34347615
Changes in 24-nt siRNA levels in Arabidopsis hybrids suggest an epigenetic contribution to hybrid vigorQ34572813
A role for noncoding transcription in activation of the yeast PHO5 geneQ34624414
PU.1 expression is modulated by the balance of functional sense and antisense RNAs regulated by a shared cis-regulatory element.Q36802972
SeqMap: mapping massive amount of oligonucleotides to the genomeQ36924070
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue4
P407language of work or nameEnglishQ1860
P1104number of pages10
P304page(s)2171-2180
P577publication date2013-03-01
P1433published inPlant PhysiologyQ3906288
P1476titleProtein-coding cis-natural antisense transcripts have high and broad expression in Arabidopsis
P478volume161

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cites work (P2860)
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Q30652590Integrated detection of natural antisense transcripts using strand-specific RNA sequencing data
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Q34883574NERF encodes a RING E3 ligase important for drought resistance and enhances the expression of its antisense gene NFYA5 in Arabidopsis
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Q89017348Widespread antisense transcription of Populus genome under drought

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