Support Vector Machine (SVM) Models for Predicting Inhibitors of the 3' Processing Step of HIV-1 Integrase

scientific article published on 9 September 2013

Support Vector Machine (SVM) Models for Predicting Inhibitors of the 3' Processing Step of HIV-1 Integrase is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1002/MINF.201300107
P8608Fatcat IDrelease_pcyux36ppvgidp5alapdgc7ili
P698PubMed publication ID27480234

P50authorAixia YanQ37839172
Johannes KirchmairQ51782466
P2093author name stringLu Tan
Maolin Wang
Shouyi Xuan
Hang Kang
P2860cites workStructure of the HIV-1 integrase catalytic domain complexed with an inhibitor: a platform for antiviral drug designQ27620348
Fragment-based design of ligands targeting a novel site on the integrase enzyme of human immunodeficiency virus 1Q27666603
Structural basis for a new mechanism of inhibition of HIV-1 integrase identified by fragment screening and structure-based designQ27667923
Small Molecule Inhibitors of the LEDGF Site of Human Immunodeficiency Virus Integrase Identified by Fragment Screening and Structure Based DesignQ27670782
New Class of HIV-1 Integrase (IN) Inhibitors with a Dual Mode of ActionQ27678745
A new model for calculating atomic charges in moleculesQ28096258
Iterative partial equalization of orbital electronegativity—a rapid access to atomic chargesQ28096294
Thiazolothiazepine inhibitors of HIV-1 integraseQ28371853
Chicoric acid analogues as HIV-1 integrase inhibitorsQ28373723
Structure-activity relationships and binding mode of styrylquinolines as potent inhibitors of HIV-1 integrase and replication of HIV-1 in cell cultureQ28377608
The Generation of a Unique Machine Description for Chemical Structures-A Technique Developed at Chemical Abstracts ServiceQ28837925
Comparison of the predicted and observed secondary structure of T4 phage lysozymeQ29398301
HIV integrase structure and function.Q30175416
Synthesis and HIV-1 integrase inhibitory activities of caffeoylglucosidesQ31436105
Development of the next generation of HIV-1 integrase inhibitors: Pyrazolone as a novel inhibitor scaffoldQ34213519
HIV chemotherapyQ34223088
Linker-modified quinoline derivatives targeting HIV-1 integrase: synthesis and biological activityQ34316520
Depsides and depsidones as inhibitors of HIV-1 integrase: discovery of novel inhibitors through 3D database searching.Q34420245
N-3 Hydroxylation of Pyrimidine-2,4-diones Yields Dual Inhibitors of HIV Reverse Transcriptase and IntegraseQ34779869
Ring substituent effects on biological activity of vinyl sulfones as inhibitors of HIV-1Q36013293
The use of receiver operating characteristic curves in biomedical informaticsQ36274414
HIV integrase inhibitors with nucleobase scaffolds: discovery of a highly potent anti-HIV agentQ36842230
Novel bifunctional quinolonyl diketo acid derivatives as HIV-1 integrase inhibitors: design, synthesis, biological activities, and mechanism of actionQ37014638
Prediction of human intestinal absorption by GA feature selection and support vector machine regressionQ37083213
Synthesis, biological evaluation and 3D-QSAR studies of 3-keto salicylic acid chalcones and related amides as novel HIV-1 integrase inhibitorsQ37399117
Arylisothiocyanate-containing esters of caffeic acid designed as affinity ligands for HIV-1 integraseQ38299500
Salicylhydrazine-Containing Inhibitors of HIV-1 Integrase: Implication for a Selective Chelation in the Integrase Active SiteQ38334448
Curcumin Analogs with Altered Potencies against HIV-1 Integrase as Probes for Biochemical Mechanisms of Drug ActionQ38342984
HIV-1 integrase pharmacophore: discovery of inhibitors through three-dimensional database searchingQ38347789
Drug resistance profiles for the HIV integrase gene in patients failing raltegravir salvage therapyQ38425605
Prediction of aqueous solubility of organic compounds based on a 3D structure representationQ38452717
Discovery of HIV-1 integrase inhibitors by pharmacophore searching.Q38558849
Design, Synthesis, and Biological Evaluation of Novel Hybrid Dicaffeoyltartaric/Diketo Acid and Tetrazole-Substitutedl-Chicoric Acid Analogue Inhibitors of Human Immunodeficiency Virus Type 1 IntegraseQ39639744
New 2-arylnaphthalenediols and triol inhibitors of HIV-1 integrase--discovery of a new polyhydroxylated antiviral agentQ39694118
Design and synthesis of novel dihydroquinoline-3-carboxylic acids as HIV-1 integrase inhibitorsQ39913483
2,3-dihydro-6,7-dihydroxy-1H-isoindol-1-one-based HIV-1 integrase inhibitorsQ40032687
Synthesis, anti-HIV-1 integrase, and cytotoxic activities of 4-chloro-N-(4-oxopyrimidin-2-yl)-2-mercaptobenzenesulfonamide derivativesQ40065034
Synthesis and biological activities of a series of 4,5-diaryl-3-hydroxy-2(5H)-furanones.Q40067524
Diketo acid pharmacophore. 2. Discovery of structurally diverse inhibitors of HIV-1 integraseQ40342534
Pharmacophore-based design of HIV-1 integrase strand-transfer inhibitorsQ40357821
Synthesis, antiviral, and anti-HIV-1 integrase activities of 3-aroyl-1,1-dioxo-1,4,2-benzodithiazinesQ40547646
Rational design and synthesis of novel dimeric diketoacid-containing inhibitors of HIV-1 integrase: implication for binding to two metal ions on the active site of integraseQ40561625
2,6-Bis(3,4,5-trihydroxybenzylydene) derivatives of cyclohexanone: novel potent HIV-1 integrase inhibitors that prevent HIV-1 multiplication in cell-based assaysQ40603490
Azido-containing aryl beta-diketo acid HIV-1 integrase inhibitorsQ40663130
Metal-dependent inhibition of HIV-1 integraseQ40684087
Structure activity of 3-aryl-1,3-diketo-containing compounds as HIV-1 integrase inhibitors.Q40719557
Synthesis and hiv-1 integrase inhibitory activities of catechol and bis-Catechol derivativesQ40766742
Styrylquinoline Derivatives: A New Class of Potent HIV-1 Integrase Inhibitors That Block HIV-1 Replication in CEM CellsQ41024638
Hydroxylated aromatic inhibitors of HIV-1 integraseQ41283270
Design, synthesis, and anti-integrase activity of catechol-DKA hybridsQ42166288
Geometrically and conformationally restrained cinnamoyl compounds as inhibitors of HIV-1 integrase: synthesis, biological evaluation, and molecular modeling.Q42539086
Arylamide inhibitors of HIV-1 integraseQ42550097
Hydrazide-containing inhibitors of HIV-1 integrase.Q42550706
Coumarin-based inhibitors of HIV integraseQ42551512
Antiretroviral agents as inhibitors of both human immunodeficiency virus type 1 integrase and protease.Q42555560
Design of a series of bicyclic HIV-1 integrase inhibitors. Part 2: Azoles: Effective metal chelatorsQ42930789
Synthesis of polyhydroxylated aromatics having amidation of piperazine nitrogen as HIV-1 integrase inhibitorQ42937331
Design, synthesis and structure-activity studies of rhodanine derivatives as HIV-1 integrase inhibitors.Q42958802
Substituted 2-pyrrolinone inhibitors of HIV-1 integraseQ43418943
Synthesis, biological evaluation and molecular modeling studies of quinolonyl diketo acid derivatives: New structural insight into the HIV-1 integrase inhibitionQ43558453
Synthesis and biological evaluation of geminal disulfones as HIV-1 integrase inhibitorsQ43600660
CoMFA and CoMSIA 3D QSAR and docking studies on conformationally-restrained cinnamoyl HIV-1 integrase inhibitors: exploration of a binding mode at the active siteQ43768382
Prediction of bioactivity of HIV-1 integrase ST inhibitors by multilinear regression analysis and support vector machineQ44528756
From ligand to complexes: inhibition of human immunodeficiency virus type 1 integrase by beta-diketo acid metal complexes.Q44619681
Catechol-substituted L-chicoric acid analogues as HIV integrase inhibitorsQ44672373
Application of CoMFA and CoMSIA 3D-QSAR and docking studies in optimization of mercaptobenzenesulfonamides as HIV-1 integrase inhibitorsQ44718814
6-aryl-2,4-dioxo-5-hexenoic acids, novel integrase inhibitors active against HIV-1 multiplication in cell-based assaysQ44802594
Synthesis of novel thiazolothiazepine based HIV-1 integrase inhibitors.Q44986910
Inhibition of the strand transfer step of HIV-1 integrase by non-natural dinucleotidesQ45040342
Design and synthesis of novel indole beta-diketo acid derivatives as HIV-1 integrase inhibitorsQ45084485
Dynamic receptor-based pharmacophore model development and its application in designing novel HIV-1 integrase inhibitorsQ45294408
Discovery and structure-activity relationship studies of a unique class of HIV-1 integrase inhibitors.Q46010734
Single amino acid substitution in HIV-1 integrase catalytic core causes a dramatic shift in inhibitor selectivityQ46109839
How similar are similarity searching methods? A principal component analysis of molecular descriptor spaceQ46174895
Discovery of raltegravir, a potent, selective orally bioavailable HIV-integrase inhibitor for the treatment of HIV-AIDS infectionQ46396658
Novel dimeric aryldiketo containing inhibitors of HIV-1 integrase: effects of the phenyl substituent and the linker orientationQ46470915
Synthesis and HIV-1 integrase inhibition of novel bis- or tetra-coumarin analoguesQ46867548
Beta-diketo acids with purine nucleobase scaffolds: novel, selective inhibitors of the strand transfer step of HIV integraseQ46913365
Dynamic pharmacophore model optimization: identification of novel HIV-1 integrase inhibitors.Q46969999
Classification of Active and Weakly Active ST Inhibitors of HIV-1 Integrase Using a Support Vector MachineQ47288588
Bounds on error expectation for support vector machinesQ52074441
Synthesis and HIV-integrase strand transfer inhibition activity of 7-hydroxy[1,3]thiazolo[5,4-b]pyridin-5(4H)-onesQ53590784
Self-Organized Formation of Topologically Correct Feature MapsQ56112936
Deriving the 3D structure of organic molecules from their infrared spectraQ60176819
Three-dimensional quantitative structure-activity relationship (QSAR) of HIV integrase inhibitors: a comparative molecular field analysis (CoMFA) studyQ72117401
Synthesis and biological evaluation of novel 5(H)-phenanthridin-6-ones, 5(H)-phenanthridin-6-one diketo acid, and polycyclic aromatic diketo acid analogs as new HIV-1 integrase inhibitorsQ79421775
HIV-1 integrase inhibition of biscoumarin analoguesQ83229505
P433issue9-10
P921main subjectsupport vector machineQ282453
P304page(s)811-826
P577publication date2013-09-09
P1433published inMolecular InformaticsQ3319476
P1476titleSupport Vector Machine (SVM) Models for Predicting Inhibitors of the 3' Processing Step of HIV-1 Integrase
P478volume32

Reverse relations

cites work (P2860)
Q27902259Filtered circular fingerprints improve either prediction or runtime performance while retaining interpretability
Q90188279Quantitative Structure - Activity Relationship Study for HIV-1 LEDGF/p75 inhibitors
Q35500226Targeting HIV-1 integrase with strand transfer inhibitors

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