A systems-oriented analysis of the grapevine R2R3-MYB transcription factor family uncovers new insights into the regulation of stilbene accumulation.

scientific article published on 12 July 2016

A systems-oriented analysis of the grapevine R2R3-MYB transcription factor family uncovers new insights into the regulation of stilbene accumulation. is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1093/DNARES/DSW028
P932PMC publication ID5066171
P698PubMed publication ID27407139

P50authorAlessandro VannozziQ61759312
Rudolf SchlechterQ86687284
José Tomás MatusQ37840560
Giovanni Battista TornielliQ42141278
Darren WongQ42849287
Ibrahim HmmamQ61103186
P2093author name stringJochen Bogs
Janine Höll
Simone Diego Castellarin
P2860cites workA probabilistic model of local sequence alignment that simplifies statistical significance estimationQ21092573
BLAST+: architecture and applicationsQ21284368
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phylaQ22122214
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CDD: specific functional annotation with the Conserved Domain DatabaseQ24655481
The grapevine transcription factor VvMYBPA1 regulates proanthocyanidin synthesis during fruit developmentQ24680561
Regulation of MYB and bHLH transcription factors: a glance at the protein levelQ26852998
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony MethodsQ27860929
Transcriptional networks in plant immunityQ28081959
The R2R3-MYB gene family in Arabidopsis thalianaQ28198054
White grapes arose through the mutation of two similar and adjacent regulatory genesQ28289585
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A MYB transcription factor regulates very-long-chain fatty acid biosynthesis for activation of the hypersensitive cell death response in ArabidopsisQ63975750
Changes in the phytoalexin content of various Vitis spp. in response to ultraviolet C elicitationQ73160073
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of ArabidopsisQ81465170
MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesQ83131843
Regulation of Jasmonate-Mediated Stamen Development and Seed Production by a bHLH-MYB Complex in ArabidopsisQ85197282
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Genome-wide analysis of transcriptional dependence and probable target sites for Abf1 and Rap1 in Saccharomyces cerevisiaeQ30445285
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Myb-related genes of the Kyoho grape ( Vitis labruscana) regulate anthocyanin biosynthesisQ30857887
Characterization of a grapevine R2R3-MYB transcription factor that regulates the phenylpropanoid pathwayQ33230543
The transcription factor VvMYB5b contributes to the regulation of anthocyanin and proanthocyanidin biosynthesis in developing grape berriesQ33341403
Analysis of the grape MYB R2R3 subfamily reveals expanded wine quality-related clades and conserved gene structure organization across Vitis and Arabidopsis genomesQ33353855
Genome-wide analysis of the "cut-and-paste" transposons of grapevine.Q33366476
Genome-wide mapping of alternative splicing in Arabidopsis thalianaQ33560271
Solar ultraviolet radiation is necessary to enhance grapevine fruit ripening transcriptional and phenolic responsesQ33904678
The grapevine guard cell-related VvMYB60 transcription factor is involved in the regulation of stomatal activity and is differentially expressed in response to ABA and osmotic stressQ34053952
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Genome-wide analysis of the grapevine stilbene synthase multigenic family: genomic organization and expression profiles upon biotic and abiotic stresses.Q34366243
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De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversityQ34554469
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Incorporating motif analysis into gene co-expression networks reveals novel modular expression pattern and new signaling pathwaysQ35008864
Cis-regulatory code of stress-responsive transcription in Arabidopsis thalianaQ35202846
Annotation of gene function in citrus using gene expression information and co-expression networksQ35206810
Inspection of the grapevine BURP superfamily highlights an expansion of RD22 genes with distinctive expression features in berry development and ABA-mediated stress responsesQ35350950
Exploration of alternative splicing events in ten different grapevine cultivarsQ35779098
Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast.Q35814351
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Structural and functional annotation of the MADS-box transcription factor family in grapevineQ35906459
The Evolutionary History of R2R3-MYB Proteins Across 50 Eukaryotes: New Insights Into Subfamily Classification and Expansion.Q36156299
Subspecialization of R2R3-MYB Repressors for Anthocyanin and Proanthocyanidin Regulation in Forage LegumesQ36398817
Purification, molecular cloning, and characterization of glutathione S-transferases (GSTs) from pigmented Vitis vinifera L. cell suspension cultures as putative anthocyanin transport proteinsQ36922321
Assembly of the draft genome of buckwheat and its applications in identifying agronomically useful genesQ37008306
AtMYB14 Regulates Cold Tolerance in ArabidopsisQ37436692
Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transpositionQ37539972
DNA-binding specificities of plant transcription factors and their potential to define target genesQ37587737
MYB transcription factors in ArabidopsisQ37776860
The interaction between MYB proteins and their target DNA binding sites.Q37954028
Alternative splicing at the intersection of biological timing, development, and stress responsesQ38157825
g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experimentsQ38302104
Network-assisted crop systems genetics: network inference and integrative analysisQ38362347
PlaNet: combined sequence and expression comparisons across plant networks derived from seven speciesQ38502841
Metabolic effects of elevated temperature on organic acid degradation in ripening Vitis vinifera fruit.Q39136341
Molecular signatures in Arabidopsis thaliana in response to insect attack and bacterial infection.Q39277710
The Eucalyptus grandis R2R3-MYB transcription factor family: evidence for woody growth-related evolution and functionQ39476383
Identification, cloning and characterization of R2R3-MYB gene family in canola (Brassica napus L.) identify a novel member modulating ROS accumulation and hypersensitive-like cell death.Q40234315
New candidate genes for the fine regulation of the colour of grapes.Q40838866
The phenylpropanoid pathway is controlled at different branches by a set of R2R3-MYB C2 repressors in grapevine.Q41468277
Integrated network analysis identifies fight-club nodes as a class of hubs encompassing key putative switch genes that induce major transcriptome reprogramming during grapevine development.Q41711027
Rank of correlation coefficient as a comparable measure for biological significance of gene coexpressionQ41790382
The R2R3-MYB transcription factors MYB14 and MYB15 regulate stilbene biosynthesis in Vitis viniferaQ43436192
A novel cation-dependent O-methyltransferase involved in anthocyanin methylation in grapevine.Q44199994
Expansion and diversification of the Populus R2R3-MYB family of transcription factorsQ44358227
Functional characterization of a new grapevine MYB transcription factor and regulation of proanthocyanidin biosynthesis in grapesQ44888095
A R2R3 type MYB transcription factor is involved in the cold regulation of CBF genes and in acquired freezing tolerance.Q46032386
A negative MYB regulator of proanthocyanidin accumulation, identified through expression quantitative locus mapping in the grape berry.Q46162402
Ectopic expression of VvMybPA2 promotes proanthocyanidin biosynthesis in grapevine and suggests additional targets in the pathwayQ46189417
EjAP2-1, an AP2/ERF gene, is a novel regulator of fruit lignification induced by chilling injury, via interaction with EjMYB transcription factors.Q47946010
More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaQ47970811
The Arabidopsis MYB5 transcription factor regulates mucilage synthesis, seed coat development, and trichome morphogenesisQ48071599
PH4 of Petunia is an R2R3 MYB protein that activates vacuolar acidification through interactions with basic-helix-loop-helix transcription factors of the anthocyanin pathwayQ48092816
A subgroup of MYB transcription factor genes undergoes highly conserved alternative splicing in Arabidopsis and riceQ48096650
Recently duplicated maize R2R3 Myb genes provide evidence for distinct mechanisms of evolutionary divergence after duplicationQ48259510
Structural, functional, and evolutionary analysis of the unusually large stilbene synthase gene family in grapevine.Q50503940
The VviMYB80 Gene is Abnormally Expressed in Vitis vinifera L. cv. 'Zhong Shan Hong' and its Expression in Tobacco Driven by the 35S Promoter Causes Male Sterility.Q50535049
MIXTA-like transcription factors and WAX INDUCER1/SHINE1 coordinately regulate cuticle development in Arabidopsis and Torenia fournieri.Q50742758
Characterization of transcriptional complexity during berry development in Vitis vinifera using RNA-Seq.Q51916372
A battery of transcription factors involved in the regulation of secondary cell wall biosynthesis in Arabidopsis.Q51947460
Arabidopsis DELLA and JAZ proteins bind the WD-repeat/bHLH/MYB complex to modulate gibberellin and jasmonate signaling synergy.Q52768576
P4510describes a project that usesCytoscapeQ3699942
P433issue5
P921main subjectRNA sequencingQ2542347
P304page(s)451-466
P577publication date2016-10-01
P1433published inDNA ResearchQ5205732
P1476titleA systems-oriented analysis of the grapevine R2R3-MYB transcription factor family uncovers new insights into the regulation of stilbene accumulation
P478volume23

Reverse relations

cites work (P2860)
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