Genomic DNA Methylation Analyses Reveal the Distinct Profiles in Castor Bean Seeds with Persistent Endosperms.

scientific article published on 28 April 2016

Genomic DNA Methylation Analyses Reveal the Distinct Profiles in Castor Bean Seeds with Persistent Endosperms. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1104/PP.16.00056
P8608Fatcat IDrelease_55kimhqwxjhe3fywbn2m7thuom
P932PMC publication ID4902593
P698PubMed publication ID27208275

P50authorDe Zhu LiQ21513403
Aizhong LiuQ59706456
Wei XuQ89253008
P2093author name stringXue Dong
Tianquan Yang
P2860cites workDraft genome sequence of the oilseed species Ricinus communisQ22122119
Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genesQ24540245
Establishing, maintaining and modifying DNA methylation patterns in plants and animalsQ24630397
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and CufflinksQ24633890
An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs)Q24655589
Clustal W and Clustal X version 2.0Q27860517
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony MethodsQ27860929
SOAP2: an improved ultrafast tool for short read alignmentQ28247469
Genomic DNA methylation: the mark and its mediatorsQ28290773
Phenotypic plasticity and the epigenetics of human diseaseQ29614515
Auxin synthesized by the YUCCA flavin monooxygenases is essential for embryogenesis and leaf formation in ArabidopsisQ33344388
Kismeth: analyzer of plant methylation states through bisulfite sequencingQ33368861
BSMAP: whole genome bisulfite sequence MAPping programQ33487484
Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybridsQ33525231
The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatinQ33670594
Genomic imprinting, methylation and parent-of-origin effects in reciprocal hybrid endosperm of castor beanQ33791237
Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis.Q33921275
Conservation and divergence of methylation patterning in plants and animalsQ33928315
DEMETER DNA glycosylase establishes MEDEA polycomb gene self-imprinting by allele-specific demethylation.Q33931372
Mutation of a major CG methylase in rice causes genome-wide hypomethylation, dysregulated genome expression, and seedling lethality.Q33971997
On the evolutionary origin of eukaryotic DNA methyltransferases and Dnmt2.Q34091253
Genome-wide evolutionary analysis of eukaryotic DNA methylation.Q34110385
The human Dnmt2 has residual DNA-(cytosine-C5) methyltransferase activity.Q34204135
Local DNA hypomethylation activates genes in rice endospermQ34276365
Domain structure of the DEMETER 5-methylcytosine DNA glycosylaseQ34320211
Castor oil: a vital industrial raw materialQ34421750
Dosage compensation in mammals: fine-tuning the expression of the X chromosomeQ34548453
Arabidopsis MET1 cytosine methyltransferase mutantsQ34617210
Transcriptome-wide identification and characterization of microRNAs from castor bean (Ricinus communis L.).Q34875035
Function of the DEMETER DNA glycosylase in the Arabidopsis thaliana male gametophyteQ34977736
Active DNA demethylation mediated by DNA glycosylasesQ35108672
Extensive, clustered parental imprinting of protein-coding and noncoding RNAs in developing maize endospermQ35647553
DNA demethylation in the Arabidopsis genome.Q35741567
Trans chromosomal methylation in Arabidopsis hybridsQ35807440
Genome-Wide Epigenetic Regulation of Gene Transcription in Maize SeedsQ35808491
Arabidopsis MSI1 is a component of the MEA/FIE Polycomb group complex and required for seed developmentQ36245472
CG gene body DNA methylation changes and evolution of duplicated genes in cassavaQ36268503
Epigenetic inheritance in plants.Q36830697
Genome-wide high resolution parental-specific DNA and histone methylation maps uncover patterns of imprinting regulation in maizeQ37420340
siRNAs and DNA methylation: seedy epigeneticsQ37686859
Seed-development programs: a systems biology-based comparison between dicots and monocots.Q38085652
Isolation and identification by sequence homology of a putative cytosine methyltransferase from Arabidopsis thalianaQ38319075
Global Analysis Reveals the Crucial Roles of DNA Methylation during Rice Seed DevelopmentQ38461126
Genome-wide identification and expression profiling of DNA methyltransferase gene family in maizeQ39172561
Genome-wide demethylation of Arabidopsis endosperm.Q40260246
Extensive demethylation of repetitive elements during seed development underlies gene imprintingQ41107458
Comparative analysis of DNA methylation patterns in transgenic Drosophila overexpressing mouse DNA methyltransferasesQ43003574
Quantitative proteomics of seed filling in castor: comparison with soybean and rapeseed reveals differences between photosynthetic and nonphotosynthetic seed metabolismQ43292851
ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyaseQ44277312
DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in arabidopsis.Q45981966
Regulation of seed size by hypomethylation of maternal and paternal genomesQ46087328
Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencingQ46125181
DNA methylation is critical for Arabidopsis embryogenesis and seed viabilityQ46722631
Multiple DNA methyltransferase genes in Arabidopsis thalianaQ47907020
Maternal control of embryogenesis by MEDEA, a polycomb group gene in ArabidopsisQ48038384
Targeted disruption of an orthologue of DOMAINS REARRANGED METHYLASE 2, OsDRM2, impairs the growth of rice plants by abnormal DNA methylationQ48051700
Genome-wide analysis of DNA methylation in soybean.Q50726588
DNA methylation dynamics during sexual reproduction in Arabidopsis thaliana.Q51313791
Performance of isobaric and isotopic labeling in quantitative plant proteomics.Q51799206
Inactivation of a DNA methylation pathway in maize reproductive organs results in apomixis-like phenotypes.Q51896810
Evolutionary Diversification of DNA Methyltransferases in Eukaryotic GenomesQ59204050
Arabidopsis thaliana DNA methylation mutantsQ72794055
One-way control of FWA imprinting in Arabidopsis endosperm by DNA methylationQ79314176
Maintenance of DNA methylation during the Arabidopsis life cycle is essential for parental imprintingQ83222110
P433issue2
P407language of work or nameEnglishQ1860
P921main subjectDNA methylationQ874745
P1104number of pages17
P304page(s)1242-1258
P577publication date2016-04-28
P1433published inPlant PhysiologyQ3906288
P1476titleGenomic DNA Methylation Analyses Reveal the Distinct Profiles in Castor Bean Seeds with Persistent Endosperms
P478volume171

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cites work (P2860)
Q55310624Changes in DNA methylation assessed by genomic bisulfite sequencing suggest a role for DNA methylation in cotton fruiting branch development.
Q54969919Development of an efficient chromatin immunoprecipitation method to investigate protein-DNA interaction in oleaginous castor bean seeds.
Q59800050Effects of ploidy variation on promoter DNA methylation and gene expression in rice (Oryza sativa L.)
Q64093617Global Gene Expression of Seed Coat Tissues Reveals a Potential Mechanism of Regulating Seed Size Formation in Castor Bean
Q91761201Integrated Methylome and Transcriptome Analysis between the CMS-D2 Line ZBA and Its Maintainer Line ZB in Upland Cotton
Q55248857Systematic analysis of DEMETER-like DNA glycosylase genes shows lineage-specific Smi-miR7972 involved in SmDML1 regulation in Salvia miltiorrhiza.
Q52642660Unravelling the epigenomic interactions between parental inbreds resulting in an altered hybrid methylome in pigeonpea.
Q64975171siRNAs regulate DNA methylation and interfere with gene and lncRNA expression in the heterozygous polyploid switchgrass.

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