Identification and physical characterization of the HbpR binding sites of the hbpC and hbpD promoters

scientific article published on June 2002

Identification and physical characterization of the HbpR binding sites of the hbpC and hbpD promoters is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1128/JB.184.11.2914-2924.2002
P932PMC publication ID135056
P698PubMed publication ID12003931
P5875ResearchGate publication ID11366973

P50authorJan Roelof van der MeerQ47007197
P2093author name stringJan Roelof van der Meer
David Tropel
P2860cites workDNA sequencing with chain-terminating inhibitorsQ22066207
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New insights into the activation of o-xylene biodegradation in Pseudomonas stutzeri OX1 by pathway substratesQ28365921
Metabolism of 2,2'-dihydroxybiphenyl by Pseudomonas sp. strain HBP1: production and consumption of 2,2',3-trihydroxybiphenylQ28378675
An upstream XylR- and IHF-induced nucleoprotein complex regulates the sigma 54-dependent Pu promoter of TOL plasmidQ35924693
The sigma 54 bacterial enhancer-binding protein family: mechanism of action and phylogenetic relationship of their functional domainsQ36122459
Constitutive ATP hydrolysis and transcription activation by a stable, truncated form of Rhizobium meliloti DCTD, a sigma 54-dependent transcriptional activator.Q38305462
Transcriptional organization and dynamic expression of the hbpCAD genes, which encode the first three enzymes for 2-hydroxybiphenyl degradation in Pseudomonas azelaica HBP1Q38305835
Oligomerization of NTRC at the glnA enhancer is required for transcriptional activationQ38314934
Simultaneous binding of two DNA duplexes to the NtrC-enhancer complex studied by two-color fluorescence cross-correlation spectroscopy.Q38314988
An Escherichia coli expression vector that allows recovery of proteins with native N-termini from purified calmodulin-binding peptide fusionsQ38324488
Association states of the transcription activator protein NtrC from E. coli determined by analytical ultracentrifugation.Q38336397
DNA binding and oligomerization of NtrC studied by fluorescence anisotropy and fluorescence correlation spectroscopyQ38338391
HbpR, a new member of the XylR/DmpR subclass within the NtrC family of bacterial transcriptional activators, regulates expression of 2-hydroxybiphenyl metabolism in Pseudomonas azelaica HBP1.Q39498570
In vivo and in vitro effects of integration host factor at the DmpR-regulated sigma(54)-dependent Po promoterQ39526389
Int-B13, an unusual site-specific recombinase of the bacteriophage P4 integrase family, is responsible for chromosomal insertion of the 105-kilobase clc element of Pseudomonas sp. Strain B13.Q39568257
Development and characterization of a whole-cell bioluminescent sensor for bioavailable middle-chain alkanes in contaminated groundwater samples.Q39803212
Active contribution of two domains to cooperative DNA binding of the enhancer-binding protein nitrogen regulator I (NtrC) of Escherichia coli: stimulation by phosphorylation and the binding of ATPQ39836581
Promoters responsive to DNA bending: a common theme in prokaryotic gene expressionQ40693748
Signal sensing by sigma 54-dependent regulators: derepression as a control mechanismQ41130496
Unusual location of two nearby pairs of upstream activating sequences for HbpR, the main regulatory protein for the 2-hydroxybiphenyl degradation pathway of "Pseudomonas azelaica" HBP1.Q43701748
Upstream regulatory sequence for transcriptional activator XylR in the first operon of xylene metabolism on the TOL plasmidQ44493742
The phosphorylated form of the enhancer-binding protein NTRC has an ATPase activity that is essential for activation of transcriptionQ46638401
Nucleotide sequence of the regulatory gene xylR of the TOL plasmid from Pseudomonas putidaQ48320573
Unusual oligomerization required for activity of NtrC, a bacterial enhancer-binding proteinQ50135158
Activation of the Pseudomonas TOL plasmid upper pathway operon. Identification of binding sites for the positive regulator XylR and for integration host factor protein.Q54693004
ATP Binding to the σ54-Dependent Activator XylRTriggers a Protein Multimerization Cycle Catalyzed by UAS DNAQ57936261
In Vitro Activities of an N-terminal Truncated Form of XylR, a σ54-dependent Transcriptional Activator of Pseudomonas putidaQ57936271
Physical and Functional Analysis of the Prokaryotic Enhancer of the σ54-promoters of the TOL Plasmid ofPseudomonas putidaQ57936279
Analysis of an upstream regulatory sequence required for activation of the regulatory gene xylS in xylene metabolism directed by the TOL plasmid of Pseudomonas putidaQ68187265
The xylABC promoter from the Pseudomonas putida TOL plasmid is activated by nitrogen regulatory genes in Escherichia coliQ68879726
Transcription of glnA in E. coli is stimulated by activator bound to sites far from the promoterQ69881595
Physical organization of the upper pathway operon promoter of the Pseudomonas TOL plasmid. Sequence and positional requirements for XylR-dependent activation of transcriptionQ70759361
Cooperative binding of DctD to the dctA upstream activation sequence of Rhizobium meliloti is enhanced in a constitutively active truncated mutantQ71574105
Visualization of DNA-protein intermediates during activation of the Pu promoter of the TOL plasmid of Pseudomonas putidaQ73048581
P433issue11
P407language of work or nameEnglishQ1860
P304page(s)2914-2924
P577publication date2002-06-01
P1433published inJournal of BacteriologyQ478419
P1476titleIdentification and physical characterization of the HbpR binding sites of the hbpC and hbpD promoters
P478volume184

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cites work (P2860)
Q35880920Bacterial transcriptional regulators for degradation pathways of aromatic compounds
Q28477185Characterisation of the putative effector interaction site of the regulatory HbpR protein from Pseudomonas azelaica by site-directed mutagenesis
Q64102321Comparative Genomic Analysis of the Regulation of Aromatic Metabolism in Betaproteobacteria
Q45102955Design of new promoters and of a dual-bioreporter based on cross-activation by the two regulatory proteins XylR and HbpR.
Q35095871Regulation of type VI secretion gene clusters by sigma54 and cognate enhancer binding proteins
Q38347839Transient XylR binding to the UAS of the Pseudomonas putida sigma54 promoter Pu revealed with high intensity UV footprinting in vivo