Stimulation and suppression of PCR-mediated recombination

scientific article published on April 1998

Stimulation and suppression of PCR-mediated recombination is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1093/NAR/26.7.1819
P932PMC publication ID147471
P698PubMed publication ID9512558
P5875ResearchGate publication ID51309157

P2093author name stringC Wilson
A B Wedel
M S Judo
P2860cites workDirected Molecular EvolutionQ56904212
Recombinant DNA sequences generated by PCR amplificationQ73356928
DNA shuffling by random fragmentation and reassembly: in vitro recombination for molecular evolutionQ24562755
In vitro selection and evolution of functional proteins by using ribosome displayQ24643887
Primer-directed enzymatic amplification of DNA with a thermostable DNA polymeraseQ26778389
Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymeraseQ27860794
Rapid evolution of a protein in vitro by DNA shufflingQ28245873
In vitro geneticsQ35342098
Inventing and improving ribozyme function: rational design versus iterative selection methodsQ36675622
In vitro selection from protein and peptide librariesQ36705378
Artificial evolution and natural ribozymesQ40481239
DNA nicking favors PCR recombinationQ40510193
DNA recombination during PCR.Q40515497
Long polymerase chain reaction amplification of heterogeneous HIV type 1 templates produces recombination at a relatively high frequencyQ46115056
Genetic AlgorithmsQ56032653
P433issue7
P407language of work or nameEnglishQ1860
P304page(s)1819-1825
P577publication date1998-04-01
P1433published inNucleic Acids ResearchQ135122
P1476titleStimulation and suppression of PCR-mediated recombination
P478volume26

Reverse relations

cites work (P2860)
Q362802762.7 million samples genotyped for HLA by next generation sequencing: lessons learned
Q91315040A case of mistaken identity
Q51825222A comparison of directed evolution approaches using the beta-glucuronidase model system.
Q34541600A method for high precision sequencing of near full-length 16S rRNA genes on an Illumina MiSeq
Q36279402A method for high-throughput production of sequence-verified DNA libraries and strain collections
Q36200883A novel process of viral vector barcoding and library preparation enables high-diversity library generation and recombination-free paired-end sequencing
Q40895699A strand invasion 3' polymerization intermediate of mammalian homologous recombination
Q36142545Absence of the JAZF1/SUZ12 chimeric transcript in the immortalized non-neoplastic endometrial stromal cell line T HESCs.
Q35647691Accurate sampling and deep sequencing of the HIV-1 protease gene using a Primer ID
Q44990072Allelic variation in genes contributing to glycoalkaloid biosynthesis in a diploid interspecific population of potato
Q82619769Allelic variation, balancing selection and positive selected sites detected from MHC class Iα gene of olive flounder
Q43640383Allohexaploidy, introgression, and the complex phylogenetic history of Elymus repens (Poaceae).
Q38567355An ALMT1 gene cluster controlling aluminum tolerance at the Alt4 locus of rye (Secale cereale L)
Q31010923An E. coli expression system for the extracellular secretion of barley alpha-amylase
Q36690550Analysis of 454 sequencing error rate, error sources, and artifact recombination for detection of Low-frequency drug resistance mutations in HIV-1 DNA.
Q21245052Analysis of transcribed human endogenous retrovirus W env loci clarifies the origin of multiple sclerosis-associated retrovirus env sequences
Q35640115Assessing long-distance RNA sequence connectivity via RNA-templated DNA-DNA ligation
Q54635486Bias and artifacts in multitemplate polymerase chain reactions (PCR).
Q35075042CATCh, an ensemble classifier for chimera detection in 16S rRNA sequencing studies
Q28727944Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data
Q33843040Changes in human immunodeficiency virus type 1 populations after treatment interruption in patients failing antiretroviral therapy.
Q45232076Characterization of C-, J- and V-region-genes of the feline T-cell receptor gamma
Q39301740Characterization of MHC class II B polymorphism in bottlenecked New Zealand saddlebacks reveals low levels of genetic diversity.
Q28960385Classification of a Large and Widespread Genus of Neotropical Trees, Guatteria (Annonaceae) and Its Three Satellite Genera Guatteriella, Guatteriopsis and Heteropetalum
Q37161414Cleavage of mispaired heteroduplex DNA substrates by numerous restriction enzymes.
Q40179461Clinical resistance to enfuvirtide does not affect susceptibility of human immunodeficiency virus type 1 to other classes of entry inhibitors
Q22003051Cloning of ribosomal ITS PCR products creates frequent, non-random chimeric sequences – a test involving heterozygotes between Gymnopus dichrous taxa I and II
Q42929822Comparative selection of the K65R and M184V/I mutations in human immunodeficiency virus type 1-infected patients enrolled in a trial of first-line triple-nucleoside analog therapy (Tonus IMEA 021).
Q35145824Comparison of T7E1 and surveyor mismatch cleavage assays to detect mutations triggered by engineered nucleases
Q33932412Comparison of UDP-glucose:flavonoid 3-O-glucosyltransferase (UFGT) gene sequences between white grapes (Vitis vinifera) and their sports with red skin
Q89802441Comparison of sequencing methods and data processing pipelines for whole genome sequencing and minority single nucleotide variant (mSNV) analysis during an influenza A/H5N8 outbreak
Q33580127Competition between Phytophthora infestans effectors leads to increased aggressiveness on plants containing broad-spectrum late blight resistance
Q34497206Complete Mitochondrial Genomes of New Zealand's First Dogs
Q38769680Complete Spectrum of CRISPR/Cas9-induced Mutations on HBV cccDNA.
Q33381383Conflicting phylogenetic signals in the SlX1/Y1 gene in Silene
Q22242229Contribution of Recombination to the Evolution of Human Immunodeficiency Viruses Expressing Resistance to Antiretroviral Treatment
Q33405486Correlation of the 4977 bp mitochondrial DNA deletion with human sperm dysfunction
Q41905932Cost-efficient high-throughput HLA typing by MiSeq amplicon sequencing
Q35975147Detecting DNA double-stranded breaks in mammalian genomes by linear amplification-mediated high-throughput genome-wide translocation sequencing
Q33875163Detection and resolution of Cryptosporidium species and species mixtures by genus-specific nested PCR-restriction fragment length polymorphism analysis, direct sequencing, and cloning
Q40336921Detection of BCR-ABL1 mutations that confer tyrosine kinase inhibitor resistance using massively parallel, next generation sequencing
Q33533813Directed evolution of biocatalysts
Q54974242Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver.
Q35549634Effect of the enzyme and PCR conditions on the quality of high-throughput DNA sequencing results
Q54277763Effects of PCR cycle number and DNA polymerase type on the 16S rRNA gene pyrosequencing analysis of bacterial communities.
Q43000793Efficient amplification and cloning of near full-length hepatitis C virus genome from clinical samples
Q37145307Elevated hypermutation levels in HIV-1 natural viral suppressors
Q35076549Epitope-specific CD8+ T lymphocytes cross-recognize mutant simian immunodeficiency virus (SIV) sequences but fail to contain very early evolution and eventual fixation of epitope escape mutations during SIV infection
Q27486806Evidence of Recombination in Intrapatient Populations of Hepatitis C Virus
Q28743961Evolution of the actin gene family in testate lobose amoebae (Arcellinida) is characterized by two distinct clades of paralogs and recent independent expansions
Q35865271Expression pattern analysis of transcribed HERV sequences is complicated by ex vivo recombination.
Q22242225Extensive recombination among human immunodeficiency virus type 1 quasispecies makes an important contribution to viral diversity in individual patients
Q35247825Extensive recombination due to heteroduplexes generates large amounts of artificial gene fragments during PCR
Q31877108Fluorescence-based method for measuring and determining the mechanisms of recombination in quantitative PCR.
Q33784861From reads to operational taxonomic units: an ensemble processing pipeline for MiSeq amplicon sequencing data
Q43468015Genotyping HapSTR loci: phase determination from direct sequencing of PCR products
Q35834559HIV-1 and HIV-2 exhibit similar mutation frequencies and spectra in the absence of G-to-A hypermutation
Q35171177HIV-1 quasispecies delineation by tag linkage deep sequencing
Q37034798Humoral Immune Pressure Selects for HIV-1 CXC-chemokine Receptor 4-using Variants
Q30929655Identification of a second rRNA gene unit in the Perkinsus andrewsi genome
Q37403656Identification of recombinant human papillomavirus type 16 variants
Q33283979In vitro 'sexual' evolution through the PCR-based staggered extension process (StEP).
Q56837945In vitro recombination during PCR of Plasmodium falciparum DNA: a potential pitfall in molecular population genetic analysis
Q64079637Inferred Allelic Variants of Immunoglobulin Receptor Genes: A System for Their Evaluation, Documentation, and Naming
Q34086048Interspecific and interploidal gene flow in Central European Arabidopsis (Brassicaceae).
Q35861215Isolation and Analysis of Rare Norovirus Recombinants from Coinfected Mice Using Drop-Based Microfluidics
Q50693547Isolation and functional analysis of a MYB transcription factor gene that is a key regulator for the development of red coloration in apple skin.
Q77536518Local repeat sequence organization of an intergenic spacer in the chloroplast genome of Chlamydomonas reinhardtii leads to DNA expansion and sequence scrambling: a complex mode of "copy-choice replication"?
Q33686054MHC class I and MHC class II DRB gene variability in wild and captive Bengal tigers (Panthera tigris tigris).
Q34257121Massively parallel haplotyping on microscopic beads for the high-throughput phase analysis of single molecules
Q46527844Methods for in vitro DNA recombination and random chimeragenesis
Q44477716Molecular evidence for multiple infections of a new subgroup of Wolbachia in the European raspberry beetle Byturus tomentosus
Q51709247Monophyly, phylogenetic position and the role of hybridization in Schoenoxiphium Nees (Cariceae, Cyperaceae).
Q27490793Multiple recombinants in two dengue virus, serotype-2 isolates from patients from Oaxaca, Mexico
Q34994579Next-generation sequencing of HIV-1 RNA genomes: determination of error rates and minimizing artificial recombination
Q46508373Non-neutral evolution and reciprocal monophyly of two expressed Mhc class II B genes in Leach's storm-petrel
Q38053654Ocean viruses: rigorously evaluating the metagenomic sample-to-sequence pipeline.
Q24804633Offset recombinant PCR: a simple but effective method for shuffling compact heterologous domains
Q91773444Optimized PCR conditions minimizing the formation of chimeric DNA molecules from MPRA plasmid libraries
Q35185241Origins and functional diversification of salinity-responsive Na(+) , K(+) ATPase α1 paralogs in salmonids.
Q38969996PCR-based screening for the most prevalent alpha 1 antitrypsin deficiency mutations (PI S, Z, and Mmalton) in COPD patients from Eastern Tunisia
Q33974966Performance of ultra-deep pyrosequencing in analysis of HIV-1 pol gene variation
Q37415682Phylogenetic relationships among diploid species of Symphyotrichum (Asteraceae: Astereae) based on two nuclear markers, ITS and GAPDH.
Q111630335Phylogenetic utility of LEAFY gene in Cinnamomum (Lauraceae): Gene duplication and polymerase chain reaction-mediated recombination
Q35600834Polymorphism and evolution of ribosomal DNA in tea (Camellia sinensis, Theaceae).
Q37182874Polymorphisms and tissue expression of the feline leukocyte antigen class I loci FLAI-E, FLAI-H, and FLAI-K.
Q33313873Protocol for nearly full-length sequencing of HIV-1 RNA from plasma
Q40649902Quantification of designer nuclease induced mutation rates: a direct comparison of different methods.
Q33781131RNA recombination of hepatitis delta virus in natural mixed-genotype infection and transfected cultured cells
Q33418747RSCA genotyping of MHC for high-throughput evolutionary studies in the model organism three-spined stickleback Gasterosteus aculeatus
Q33201151Rapid evolution of beta-glucuronidase specificity by saturation mutagenesis of an active site loop
Q47839779Reciprocal translocation of small numbers of inbred individuals rescues immunogenetic diversity
Q56899554Recombination during in vitro evolution
Q35699743Recurrent DNA inversion rearrangements in the human genome
Q51715170Residual polymerase activity-induced bias in terminal restriction fragment length polymorphism analysis.
Q28539563Residual viremia in an RT-SHIV rhesus macaque HAART model marked by the presence of a predominant plasma clone and a lack of viral evolution
Q28245354Reticulate evolution, introgression, and intertribal gene capture in an allohexaploid grass
Q33603001Reticulate evolutionary history of a complex group of grasses: phylogeny of Elymus StStHH allotetraploids based on three nuclear genes
Q44416043Ribosomal gene polymorphism in small genomes: analysis of different 16S rRNA sequences expressed in the honeybee parasite Nosema ceranae (Microsporidia).
Q37093847Role of minority populations of human immunodeficiency virus type 1 in the evolution of viral resistance to protease inhibitors.
Q34141458Sample richness and genetic diversity as drivers of chimera formation in nSSU metagenetic analyses
Q57178024Scrutinizing key steps for reliable metabarcoding of environmental samples
Q33340831Selection, diversity and evolutionary patterns of the MHC class II DAB in free-ranging Neotropical marsupials
Q37128674Sequence diversity in coding regions of candidate genes in the glycoalkaloid biosynthetic pathway of wild potato species
Q33248804Seven different genes encode a diverse mixture of isoforms of Bet v 1, the major birch pollen allergen
Q38586389Stable gene replacement in barley by targeted double-strand break induction
Q51637066Staggered extension process in vitro DNA recombination.
Q45654991Strategies for the detection of potential beet necrotic yellow vein virus genome recombinations which might arise as a result of growing A type coat protein gene-expressing sugarbeets in soil containing B type virus
Q33214699The population genetics of the alpha-2 globin locus of orangutans (Pongo pygmaeus).
Q33506651The potato developer (D) locus encodes an R2R3 MYB transcription factor that regulates expression of multiple anthocyanin structural genes in tuber skin
Q36066145Three new alternative splicing variants of human cytochrome P450 2D6 mRNA in human extratumoral liver tissue
Q85042592Two novel variants in the 3′UTR of the BRCA1 gene in familial breast and/or ovarian cancer
Q30886764U3 snoRNA genes are multi-copy and frequently linked to U5 snRNA genes in Euglena gracilis
Q55222973Uncoupling of sgRNAs from their associated barcodes during PCR amplification of combinatorial CRISPR screens.
Q30887367Unreliable mtDNA data due to nuclear insertions: a cautionary tale from analysis of humans and other great apes

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