Oligonucleotide bias in Bacillus subtilis: general trends and taxonomic comparisons

scientific article published on June 1998

Oligonucleotide bias in Bacillus subtilis: general trends and taxonomic comparisons is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1093/NAR/26.12.2971
P932PMC publication ID147636
P698PubMed publication ID9611243
P5875ResearchGate publication ID13673561

P50authorAntoine DanchinQ2853841
P2093author name stringRocha EP
Viari A
P2860cites workComplete Genome Sequence of the Methanogenic Archaeon, Methanococcus jannaschiiQ22065564
The complete genome sequence of the gram-positive bacterium Bacillus subtilisQ22122360
REBASE-restriction enzymes and methylasesQ24544132
Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolutionQ27748814
The complete genome sequence of Escherichia coli K-12Q27860542
Whole-genome random sequencing and assembly of Haemophilus influenzae RdQ27860765
The distribution of restriction enzyme sites in Escherichia coliQ28776319
Asymmetric substitution patterns in the two DNA strands of bacteriaQ29618276
Restriction-modification systems as genomic parasites in competition for specific sequencesQ33756047
Over- and underrepresentation of short DNA words in herpesvirus genomesQ33825905
Genes and their organization in the replication origin region of the bacterial chromosomeQ34365476
Cytosine-specific type II DNA methyltransferases. A conserved enzyme core with variable target-recognizing domainsQ34525794
SubtiList: a relational database for the Bacillus subtilis genomeQ36698687
Over- and under-representation of short oligonucleotides in DNA sequencesQ36835268
Contacts between mammalian RNA polymerase II and the template DNA in a ternary elongation complexQ40404604
Statistical analyses of counts and distributions of restriction sites in DNA sequencesQ40421211
Computational DNA sequence analysisQ40573002
Avoidance of palindromic words in bacterial and archaeal genomes: a close connection with restriction enzymesQ41353265
An efficient statistic to detect over- and under-represented words in DNA sequencesQ41535918
Profile analysisQ43640346
Linguistics of nucleotide sequences: morphology and comparison of vocabulariesQ46951423
Exceptional motifs in different Markov chain models for a statistical analysis of DNA sequencesQ48075881
Chance and statistical significance in protein and DNA sequence analysis.Q52417792
P433issue12
P407language of work or nameEnglishQ1860
P921main subjectBacillus subtilisQ131238
biasQ742736
P304page(s)2971-2980
P577publication date1998-06-01
P1433published inNucleic Acids ResearchQ135122
P1476titleOligonucleotide bias in Bacillus subtilis: general trends and taxonomic comparisons
P478volume26

Reverse relations

cites work (P2860)
Q51957900'Genomemark': detecting word periodicity in biological sequences.
Q42577019A Markovian analysis of bacterial genome sequence constraints.
Q30815504A novel bioinformatics method for efficient knowledge discovery by BLSOM from big genomic sequence data
Q33778360Asymmetric substitution patterns: a review of possible underlying mutational or selective mechanisms
Q24555229Behavior of restriction-modification systems as selfish mobile elements and their impact on genome evolution
Q33789255Cellular responses to postsegregational killing by restriction-modification genes
Q60529742Characteristics of Chi distribution on different bacterial genomes
Q33745225Codon usage and lateral gene transfer in Bacillus subtilis
Q34410918Current opportunities and challenges in microbial metagenome analysis--a bioinformatic perspective
Q35081860DNA methyltransferases of the cyanobacterium Anabaena PCC 7120.
Q24794583Detection and characterization of horizontal transfers in prokaryotes using genomic signature
Q43022605Different clustering of genomes across life using the A-T-C-G and degenerate R-Y alphabets: early and late signaling on genome evolution?
Q27496480Dissecting protein loops with a statistical scalpel suggests a functional implication of some structural motifs
Q42704128Evidence for diversifying selection at the pyoverdine locus of Pseudomonas aeruginosa
Q34373303Evolutionary implications of microbial genome tetranucleotide frequency biases
Q33537448Exact distribution of a pattern in a set of random sequences generated by a Markov source: applications to biological data
Q41071712From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later
Q34615784Genomic changes in nucleotide and dinucleotide frequencies in Pasteurella multocida cultured under high temperature
Q52968376Genomic choice of codons in 16 microbial species.
Q39600720Genomic repeats, genome plasticity and the dynamics of Mycoplasma evolution
Q41995190High-throughput analysis of type I-E CRISPR/Cas spacer acquisition in E. coli
Q33272668Hon-yaku: a biology-driven Bayesian methodology for identifying translation initiation sites in prokaryotes
Q33883702Implication of gene distribution in the bacterial chromosome for the bacterial cell factory
Q35874068Lifespan of restriction-modification systems critically affects avoidance of their recognition sites in host genomes.
Q35144970Methylome diversification through changes in DNA methyltransferase sequence specificity.
Q30385373Mining protein loops using a structural alphabet and statistical exceptionality
Q39600777Over-representation of repeats in stress response genes: a strategy to increase versatility under stressful conditions?
Q33789627Palindromes in SARS and Other Coronaviruses
Q30384264Peptide vocabulary analysis reveals ultra-conservation and homonymity in protein sequences
Q30500792Practical application of self-organizing maps to interrelate biodiversity and functional data in NGS-based metagenomics
Q24805011Relationship of SARS-CoV to other pathogenic RNA viruses explored by tetranucleotide usage profiling
Q42127516Remarkable sequence signatures in archaeal genomes
Q34808966Resolving prokaryotic taxonomy without rRNA: longer oligonucleotide word lengths improve genome and metagenome taxonomic classification
Q33554171Restriction glycosylases: involvement of endonuclease activities in the restriction process
Q33801564Shaping the genome--restriction-modification systems as mobile genetic elements.
Q32050134The complete genome of Bacillus subtilis: from sequence annotation to data management and analysis
Q52954753The genome of Campylobacter jejuni: codon and amino acid usage.
Q42181484Visualization of genome signatures of eukaryote genomes by batch-learning self-organizing map with a special emphasis on Drosophila genomes
Q54412088n-Gram characterization of genomic islands in bacterial genomes.

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