| scholarly article | Q13442814 |
| P50 | author | Andrei N. Lupas | Q57321069 |
| P2093 | author name string | Tancred Frickey | |
| P2860 | cites work | Initial sequencing and analysis of the human genome | Q21045365 |
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| Karyotypic analysis and evidence of tetraploidy in the North American paddlefish, Polyodon spathula | Q43797994 | ||
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| Genes lost during evolution. | Q52589307 | ||
| Evolution of two-component signal transduction | Q73281918 | ||
| Phylogenetic analyses do not support horizontal gene transfers from bacteria to vertebrates | Q74065762 | ||
| Possible significances of duplication in evolution | Q76205299 | ||
| P433 | issue | 17 | |
| P921 | main subject | automation | Q184199 |
| P304 | page(s) | 5231-5238 | |
| P577 | publication date | 2004-09-30 | |
| P1433 | published in | Nucleic Acids Research | Q135122 |
| P1476 | title | PhyloGenie: automated phylome generation and analysis | |
| P478 | volume | 32 |
| Q59658399 | 9 Functional Genomics of the Thermo-Acidophilic Archaeon Sulfolobus solfataricus |
| Q34067963 | A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria |
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| Q35318855 | Biased gene transfer and its implications for the concept of lineage |
| Q33336587 | Chlamydiae has contributed at least 55 genes to Plantae with predominantly plastid functions |
| Q100490828 | Common origin of ornithine-urea cycle in opisthokonts and stramenopiles |
| Q33512140 | Computational annotation of genes differentially expressed along olive fruit development. |
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| Q58441071 | Contribution of lateral gene transfer to the gene repertoire of a gut-adapted methanogen |
| Q35751642 | DarkHorse: a method for genome-wide prediction of horizontal gene transfer |
| Q42124559 | Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention |
| Q28754450 | Did an ancient chlamydial endosymbiosis facilitate the establishment of primary plastids? |
| Q42921886 | Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement |
| Q41485404 | Evidence for existence of "mesotogas," members of the order Thermotogales adapted to low-temperature environments |
| Q33417886 | Evolution from a respiratory ancestor to fill syntrophic and fermentative niches: comparative fenomics of six Geobacteraceae species |
| Q21267220 | Evolution of electron transfer out of the cell: comparative genomics of six Geobacter genomes |
| Q34020897 | Experimental design and statistical rigor in phylogenomics of horizontal and endosymbiotic gene transfer |
| Q36244359 | Extensive Inter-Domain Lateral Gene Transfer in the Evolution of the Human Commensal Methanosphaera stadtmanae |
| Q24814380 | FIGENIX: intelligent automation of genomic annotation: expertise integration in a new software platform |
| Q27499704 | Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling |
| Q31049709 | Genome-wide comparative analysis of phylogenetic trees: the prokaryotic forest of life |
| Q36226856 | HGT-Finder: A New Tool for Horizontal Gene Transfer Finding and Application to Aspergillus genomes |
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| Q33300288 | Horizontal gene transfer in chromalveolates |
| Q111629317 | Horizontal gene transfer in the evolution of photosynthetic eukaryotes |
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| Q34571576 | Hot transcriptomics |
| Q34262431 | Insights into the bovine rumen plasmidome |
| Q30661663 | Integrating metagenomic and amplicon databases to resolve the phylogenetic and ecological diversity of the Chlamydiae |
| Q30494614 | Large genomic differences between the morphologically indistinguishable diplomonads Spironucleus barkhanus and Spironucleus salmonicida |
| Q36958726 | Multiple genes of apparent algal origin suggest ciliates may once have been photosynthetic. |
| Q36091901 | On the reversibility of parasitism: adaptation to a free-living lifestyle via gene acquisitions in the diplomonad Trepomonas sp. PC1. |
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| Q48411685 | PhyloGena--a user-friendly system for automated phylogenetic annotation of unknown sequences |
| Q33314681 | PhyloSort: a user-friendly phylogenetic sorting tool and its application to estimating the cyanobacterial contribution to the nuclear genome of Chlamydomonas |
| Q57696090 | PlanTAPDB, a phylogeny-based resource of plant transcription-associated proteins |
| Q42560814 | Reconciliation of gene and species trees |
| Q46264423 | Reconstructing Yeasts Phylogenies and Ancestors from Whole Genome Data |
| Q41021288 | SICLE: a high-throughput tool for extracting evolutionary relationships from phylogenetic trees |
| Q33858826 | Shotgun sequencing of Yersinia enterocolitica strain W22703 (biotype 2, serotype O:9): genomic evidence for oscillation between invertebrates and mammals |
| Q33241410 | Simplifying gene trees for easier comprehension |
| Q37235405 | TARGeT: a web-based pipeline for retrieving and characterizing gene and transposable element families from genomic sequences |
| Q35170579 | Telling the whole story in a 10,000-genome world |
| Q34329676 | The Genome of Nitrospina gracilis Illuminates the Metabolism and Evolution of the Major Marine Nitrite Oxidizer |
| Q22065481 | The Genome of Thermosipho africanus TCF52B: Lateral Genetic Connections to the Firmicutes and Archaea |
| Q42551891 | The MPI Bioinformatics Toolkit for protein sequence analysis |
| Q33326362 | The eukaryotic tree of life: endosymbiosis takes its TOL. |
| Q21089598 | The genome of the obligate intracellular parasite Trachipleistophora hominis: new insights into microsporidian genome dynamics and reductive evolution |
| Q33716090 | The scale and evolutionary significance of horizontal gene transfer in the choanoflagellate Monosiga brevicollis |
| Q21092857 | The transferome of metabolic genes explored: analysis of the horizontal transfer of enzyme encoding genes in unicellular eukaryotes |
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| Q36953995 | aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity. |
| Q37856363 | metaTIGER: a metabolic evolution resource |
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