scholarly article | Q13442814 |
P50 | author | David Altshuler | Q5230746 |
David Reich | Q5238967 | ||
Stacey Gabriel | Q32649203 | ||
Stephen F Schaffner | Q37366508 | ||
Mark Joseph Daly | Q39071290 | ||
P2093 | author name string | Catherine Foo | |
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P433 | issue | 11 | |
P407 | language of work or name | English | Q1860 |
P304 | page(s) | 1576-1583 | |
P577 | publication date | 2005-11-01 | |
P1433 | published in | Genome Research | Q5533485 |
P1476 | title | Calibrating a coalescent simulation of human genome sequence variation | |
P478 | volume | 15 |
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Q33457712 | A complex selection signature at the human AVPR1B gene |
Q34091559 | A composite of multiple signals distinguishes causal variants in regions of positive selection |
Q34005332 | A comprehensive map of mobile element insertion polymorphisms in humans |
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Q33760984 | A new method to reconstruct recombination events at a genomic scale |
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Q37364305 | A survey of genetic simulation software for population and epidemiological studies |
Q29615756 | A systematic survey of loss-of-function variants in human protein-coding genes |
Q42635605 | A trans-specific polymorphism in ZC3HAV1 is maintained by long-standing balancing selection and may confer susceptibility to multiple sclerosis. |
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Q51366697 | A unified framework for haplotype inference in nuclear families. |
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Q36095609 | Adaptive evolution of loci covarying with the human African Pygmy phenotype |
Q21093625 | African signatures of recent positive selection in human FOXI1 |
Q64082481 | Alleles associated with physical activity levels are estimated to be older than anatomically modern humans |
Q37607938 | Allelic differences between Europeans and Chinese for CREB1 SNPs and their implications in gene expression regulation, hippocampal structure and function, and bipolar disorder susceptibility. |
Q28659864 | An Aboriginal Australian genome reveals separate human dispersals into Asia |
Q43136367 | An abundance of rare functional variants in 202 drug target genes sequenced in 14,002 people |
Q35133190 | An evolutionary analysis of antigen processing and presentation across different timescales reveals pervasive selection |
Q36105234 | An evolutionary history of the selectin gene cluster in humans. |
Q64890398 | An integrative association method for omics data based on a modified Fisher's method with application to childhood asthma. |
Q34093596 | An overview of population genetic data simulation |
Q33380176 | Analyses and comparison of accuracy of different genotype imputation methods |
Q33593078 | Analyses and comparison of imputation-based association methods |
Q36913464 | Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants |
Q28475884 | Ancient and recent adaptive evolution of primate non-homologous end joining genes |
Q33556686 | Ancient and recent selective pressures shaped genetic diversity at AIM2-like nucleic acid sensors. |
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Q33582973 | Approximate Bayesian Computation (ABC) in practice. |
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Q39870473 | Assessing the impact of population stratification on association studies of rare variation |
Q36365189 | Associating Multivariate Quantitative Phenotypes with Genetic Variants in Family Samples with a Novel Kernel Machine Regression Method |
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Q33242822 | Balancing selection and its effects on sequences in nearby genome regions |
Q33935390 | Balancing selection is common in the extended MHC region but most alleles with opposite risk profile for autoimmune diseases are neutrally evolving |
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Q45924242 | Bayesian variable selection for survival regression in genetics. |
Q36605794 | Beyond Rare-Variant Association Testing: Pinpointing Rare Causal Variants in Case-Control Sequencing Study |
Q35711291 | Clusters of adaptive evolution in the human genome |
Q33688850 | Coalescent simulation of intracodon recombination |
Q33688537 | Comparison of multimarker logistic regression models, with application to a genomewide scan of schizophrenia. |
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Q21283863 | Complex signatures of selection for the melanogenic loci TYR, TYRP1 and DCT in humans |
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Q36804859 | Confounding between recombination and selection, and the Ped/Pop method for detecting selection |
Q36825567 | Constructing genomic maps of positive selection in humans: where do we go from here? |
Q34000898 | Contrasting X-linked and autosomal diversity across 14 human populations |
Q40798470 | Contrasting evolution of diversity at two disease-associated chicken genes |
Q39680518 | Contrasting signals of positive selection in genes involved in human skin-color variation from tests based on SNP scans and resequencing |
Q35632412 | Crohn's disease and genetic hitchhiking at IBD5 |
Q37737119 | Cross-cousin marriage among the Yanomamö shows evidence of parent-offspring conflict and mate competition between brothers |
Q31151279 | DESCARTES' RULE OF SIGNS AND THE IDENTIFIABILITY OF POPULATION DEMOGRAPHIC MODELS FROM GENOMIC VARIATION DATA. |
Q37176315 | Darwinian and demographic forces affecting human protein coding genes |
Q33830127 | Dating the age of admixture via wavelet transform analysis of genome-wide data |
Q24540724 | Deciphering the ancient and complex evolutionary history of human arylamine N-acetyltransferase genes |
Q34367064 | Demographic inference using spectral methods on SNP data, with an analysis of the human out-of-Africa expansion |
Q22066006 | Detecting ancient admixture and estimating demographic parameters in multiple human populations |
Q36909340 | Detecting and characterizing genomic signatures of positive selection in global populations |
Q36060594 | Detecting associations of rare variants with common diseases: collapsing or haplotyping? |
Q24288970 | Detecting autozygosity through runs of homozygosity: a comparison of three autozygosity detection algorithms |
Q41316117 | Detecting disease association signals with multiple genetic variants and covariates |
Q41078391 | Detecting disease-causing mutations in the human genome by haplotype matching |
Q33522064 | Detecting positive selection from genome scans of linkage disequilibrium |
Q35004969 | Detecting rare variants in case-parents association studies |
Q33630381 | Detecting the Genetic Signature of Natural Selection in Human Populations: Models, Methods, and Data |
Q35697719 | Detecting the Genomic Signature of Divergent Selection in Presence of Gene Flow |
Q34356036 | Detection of disease-associated deletions in case-control studies using SNP genotypes with application to rheumatoid arthritis |
Q36515777 | Dietary change and adaptive evolution of enamelin in humans and among primates |
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Q37587651 | Distortion of genealogical properties when the sample is very large |
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Q98665271 | Dynamic incorporation of multiple in silico functional annotations empowers rare variant association analysis of large whole-genome sequencing studies at scale |
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Q61459605 | Efficient multilocus association testing for whole genome association studies using localized haplotype clustering |
Q40879974 | Empirical Bayes scan statistics for detecting clusters of disease risk variants in genetic studies |
Q35107911 | Enriching targeted sequencing experiments for rare disease alleles. |
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Q21558765 | Estimation of pairwise identity by descent from dense genetic marker data in a population sample of haplotypes |
Q34381812 | Estimators of the human effective sex ratio detect sex biases on different timescales |
Q39329664 | Evaluating empirical bounds on complex disease genetic architecture |
Q36172690 | Evaluating the Calibration and Power of Three Gene-Based Association Tests of Rare Variants for the X Chromosome |
Q30828197 | Evaluating the possibility of detecting evidence of positive selection across Asia with sparse genotype data from the HUGO Pan-Asian SNP Consortium |
Q33827035 | Evaluation of methods for detecting conversion events in gene clusters |
Q31087752 | Evidence for large inversion polymorphisms in the human genome from HapMap data |
Q33598350 | Evidence for positive selection on the Osteogenin (BMP3) gene in human populations |
Q46914473 | Evolutionary analysis of the contact system indicates that kininogen evolved adaptively in mammals and in human populations |
Q36754741 | Evolutionary constraints in the β-globin cluster: the signature of purifying selection at the δ-globin (HBD) locus and its role in developmental gene regulation |
Q33353095 | Evolutionary genetics of the human Rh blood group system |
Q33610333 | Evolutionary history of Tibetans inferred from whole-genome sequencing. |
Q44096290 | Evolutionary insights into the high worldwide prevalence of MBL2 deficiency alleles |
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Q34068319 | Exploration of signals of positive selection derived from genotype-based human genome scans using re-sequencing data |
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Q28066294 | Explosive genetic evidence for explosive human population growth |
Q34300842 | Extending rare-variant testing strategies: analysis of noncoding sequence and imputed genotypes |
Q35105707 | Extreme population differences in the human zinc transporter ZIP4 (SLC39A4) are explained by positive selection in Sub-Saharan Africa |
Q33807685 | FISH: fast and accurate diploid genotype imputation via segmental hidden Markov model |
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Q30854460 | Family-based association test using both common and rare variants and accounting for directions of effects for sequencing data |
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Q30587122 | Family-based association tests for sequence data, and comparisons with population-based association tests |
Q33236606 | Fast "coalescent" simulation |
Q33386692 | Fast and flexible simulation of DNA sequence data |
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Q34089812 | Finding disease variants in Mendelian disorders by using sequence data: methods and applications |
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Q34068202 | Flexible and robust methods for rare-variant testing of quantitative traits in trios and nuclear families |
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Q33367799 | Fregene: simulation of realistic sequence-level data in populations and ascertained samples |
Q37238784 | Functional and genetic evidence that the Mal/TIRAP allele variant 180L has been selected by providing protection against septic shock |
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Q36494293 | Gene-Based Association Analysis for Censored Traits Via Fixed Effect Functional Regressions |
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Q34307663 | Generalized functional linear models for gene-based case-control association studies |
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Q92951697 | Genetic Variation in Human Gene Regulatory Factors Uncovers Regulatory Roles in Local Adaptation and Disease |
Q33957263 | Genetic adaptation of the antibacterial human innate immunity network |
Q30000264 | Genetic data simulators and their applications: an overview |
Q57737535 | Genetic diversity at endoplasmic reticulum aminopeptidases is maintained by balancing selection and is associated with natural resistance to HIV-1 infection |
Q45923801 | Genetic diversity in human erythrocyte pyruvate kinase. |
Q21562342 | Genetic variation and recent positive selection in worldwide human populations: evidence from nearly 1 million SNPs |
Q34817128 | Genome-wide association studies in diverse populations |
Q23000444 | Genome-wide detection and characterization of positive selection in human populations |
Q21147078 | Genome-wide insights into the patterns and determinants of fine-scale population structure in humans |
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Q33319569 | Genome-wide prediction of functional gene-gene interactions inferred from patterns of genetic differentiation in mice and men. |
Q31142964 | Genome-wide significance for dense SNP and resequencing data |
Q39562643 | Genomic analysis of Andamanese provides insights into ancient human migration into Asia and adaptation |
Q28082852 | Genomic data as the "hitchhiker's guide" to cattle adaptation: tracking the milestones of past selection in the bovine genome |
Q91725008 | Genomic evidence for shared common ancestry of East African hunting-gathering populations and insights into local adaptation |
Q30580702 | Genomic prediction in animals and plants: simulation of data, validation, reporting, and benchmarking |
Q28742199 | Genomic signatures of diet-related shifts during human origins |
Q36489998 | Genotype calling and haplotyping in parent-offspring trios |
Q34143687 | Genotype calling from next-generation sequencing data using haplotype information of reads |
Q24651979 | Global distribution of genomic diversity underscores rich complex history of continental human populations |
Q34989945 | Global patterns of diversity and selection in human tyrosinase gene |
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Q33976828 | Haplotype kernel association test as a powerful method to identify chromosomal regions harboring uncommon causal variants. |
Q34029773 | Haplotype structure and divergence at human and chimpanzee serotonin transporter and receptor genes: implications for behavioral disorder association analyses |
Q36441989 | Haplotype-based methods for detecting uncommon causal variants with common SNPs |
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Q33571779 | Highly punctuated patterns of population structure on the X chromosome and implications for African evolutionary history |
Q34655368 | How reliable are empirical genomic scans for selective sweeps? |
Q33530131 | Human and non-human primate genomes share hotspots of positive selection |
Q34032424 | Human congenital diseases with mixed modes of inheritance have a shortage of recessive disease. A demographic scenario? |
Q21560816 | Human endogenous retrovirus K106 (HERV-K106) was infectious after the emergence of anatomically modern humans |
Q33728106 | Human genome variation and the concept of genotype networks |
Q34342301 | Human genomic regions with exceptionally high levels of population differentiation identified from 911 whole-genome sequences |
Q28744050 | Human population dispersal "Out of Africa" estimated from linkage disequilibrium and allele frequencies of SNPs |
Q42609427 | IRiS: construction of ARG networks at genomic scales |
Q54576018 | Identification of a new susceptibility variant for multiple sclerosis in OAS1 by population genetics analysis. |
Q34169422 | Identification of copy number variation hotspots in human populations |
Q34682335 | Identification of rare causal variants in sequence-based studies: methods and applications to VPS13B, a gene involved in Cohen syndrome and autism |
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Q38705442 | Improving power for rare-variant tests by integrating external controls |
Q34980865 | Improving power for robust trans-ethnic meta-analysis of rare and low-frequency variants with a partitioning approach |
Q40027560 | Increased constraints on MC4R during primate and human evolution |
Q37342111 | Increasing Generality and Power of Rare-Variant Tests by Utilizing Extended Pedigrees |
Q28741551 | Inference of human population history from individual whole-genome sequences |
Q30000828 | Inference of population splits and mixtures from genome-wide allele frequency data |
Q35695638 | Inferring Very Recent Population Growth Rate from Population-Scale Sequencing Data: Using a Large-Sample Coalescent Estimator |
Q34765343 | Inferring demographic history from a spectrum of shared haplotype lengths |
Q28681718 | Inferring demography from runs of homozygosity in whole-genome sequence, with correction for sequence errors |
Q42757914 | Inferring human population size and separation history from multiple genome sequences |
Q30591106 | Inferring population size changes with sequence and SNP data: lessons from human bottlenecks |
Q21144993 | Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data |
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Q35664475 | Interlocus gene conversion explains at least 2.7% of single nucleotide variants in human segmental duplications. |
Q37182584 | Joint haplotype phasing and genotype calling of multiple individuals using haplotype informative reads |
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Q37142667 | Learning natural selection from the site frequency spectrum |
Q34308519 | Length distributions of identity by descent reveal fine-scale demographic history |
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Q30952543 | Likelihood-based complex trait association testing for arbitrary depth sequencing data |
Q36466280 | Limited evidence for classic selective sweeps in African populations |
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Q37260619 | Linkage disequilibrium between loci with unknown phase |
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Q42674018 | Long-term balancing selection maintains trans-specific polymorphisms in the human TRIM5 gene |
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Q24635938 | MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes |
Q33501885 | Measuring the sensitivity of single-locus "neutrality tests" using a direct perturbation approach |
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Q91804600 | Meta-Qtest: meta-analysis of quadratic test for rare variants |
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Q36677259 | Meta-analysis of Complex Diseases at Gene Level with Generalized Functional Linear Models |
Q38779856 | Meta-analysis of quantitative pleiotropic traits for next-generation sequencing with multivariate functional linear models |
Q33414073 | Methods for human demographic inference using haplotype patterns from genomewide single-nucleotide polymorphism data |
Q24630088 | Mobile elements reveal small population size in the ancient ancestors of Homo sapiens |
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Q28764738 | Multilocus patterns of nucleotide diversity, linkage disequilibrium and demographic history of Norway spruce [Picea abies (L.) Karst] |
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Q33321249 | Parallel selection on TRPV6 in human populations |
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Q21145248 | Population structure and eigenanalysis |
Q39802425 | Positive selection on mitochondrial M7 lineages among the Gelong people in Hainan |
Q90467268 | Positive selection on schizophrenia-associated ST8SIA2 gene in post-glacial Asia |
Q34384481 | Positive selection on the osteoarthritis-risk and decreased-height associated variants at the GDF5 gene in East Asians |
Q21145263 | Possible ancestral structure in human populations |
Q37129418 | Power of deep, all-exon resequencing for discovery of human trait genes |
Q47791475 | Powerful Genetic Association Analysis for Common or Rare Variants with High-Dimensional Structured Traits. |
Q49822312 | Powerful and robust cross-phenotype association test for case-parent trios. |
Q39528269 | Prioritizing individual genetic variants after kernel machine testing using variable selection. |
Q51959007 | QMSim: a large-scale genome simulator for livestock. |
Q33915788 | QTLMAS 2010: simulated dataset |
Q24655574 | Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering |
Q41812992 | Rapidly Registering Identity-by-Descent Across Ancestral Recombination Graphs. |
Q36063830 | Rare Variants Association Analysis in Large-Scale Sequencing Studies at the Single Locus Level |
Q39345468 | Rare variant association test in family-based sequencing studies |
Q37484322 | Rare variant association testing by adaptive combination of P-values |
Q40133735 | Rare variant testing across methods and thresholds using the multi-kernel sequence kernel association test (MK-SKAT). |
Q35133493 | Rare variants detection with kernel machine learning based on likelihood ratio test |
Q31094385 | Rare-Variant Kernel Machine Test for Longitudinal Data from Population and Family Samples |
Q33954046 | Rare-variant association testing for sequencing data with the sequence kernel association test |
Q46655315 | Rare-variant association tests in longitudinal studies, with an application to the Multi-Ethnic Study of Atherosclerosis (MESA). |
Q51556717 | Re-examining Dis/Similarity-Based Tests for Rare-Variant Association with Case-Control Samples. |
Q41667582 | Recent explosive human population growth has resulted in an excess of rare genetic variants |
Q46848051 | Recombination networks as genetic markers in a human variation study of the Old World |
Q46523768 | Recombination rates in admixed individuals identified by ancestry-based inference |
Q39496810 | Refining the Use of Linkage Disequilibrium as a Robust Signature of Selective Sweeps |
Q57278407 | Refining the impact of TCF7L2 gene variants on type 2 diabetes and adaptive evolution |
Q41963101 | Replication of genetic associations as pseudoreplication due to shared genealogy |
Q53392505 | Reproducible simulations of realistic samples for next-generation sequencing studies using Variant Simulation Tools. |
Q36702004 | Reproduction and immunity-driven natural selection in the human WFDC locus |
Q34400818 | Resurrecting surviving Neandertal lineages from modern human genomes |
Q90573058 | Retrospective Association Analysis of Longitudinal Binary Traits Identifies Important Loci and Pathways in Cocaine Use |
Q30992447 | Reveel: large-scale population genotyping using low-coverage sequencing data |
Q35748549 | Robust and Powerful Affected Sibpair Test for Rare Variant Association |
Q40235180 | Sampling ARG of multiple populations under complex configurations of subdivision and admixture |
Q24676642 | Scan of human genome reveals no new Loci under ancient balancing selection |
Q36017094 | Scan-statistic approach identifies clusters of rare disease variants in LRP2, a gene linked and associated with autism spectrum disorders, in three datasets |
Q37318455 | Scanning for genomic regions subject to selective sweeps using SNP-MaP strategy. |
Q50631433 | Searching for signals of evolutionary selection in 168 genes related to immune function. |
Q37076975 | Selection and explosive growth alter genetic architecture and hamper the detection of causal rare variants |
Q34462822 | Selection and reduced population size cannot explain higher amounts of Neandertal ancestry in East Asian than in European human populations |
Q42684890 | SeqSIMLA2: simulating correlated quantitative traits accounting for shared environmental effects in user-specified pedigree structure |
Q40377156 | SeqSIMLA2_exact: simulate multiple disease sites in large pedigrees with given disease status for diseases with low prevalence |
Q34778042 | SeqSIMLA: a sequence and phenotype simulation tool for complex disease studies |
Q35982039 | Sequence Kernel Association Analysis of Rare Variant Set Based on the Marginal Regression Model for Binary Traits |
Q36494204 | Sequence Kernel Association Test of Multiple Continuous Phenotypes |
Q36909285 | Sequence kernel association tests for the combined effect of rare and common variants |
Q33559782 | Sequence variation and genetic evolution at the human F12 locus: mapping quantitative trait nucleotides that influence FXII plasma levels |
Q42854796 | Sequence-level population simulations over large genomic regions |
Q50707628 | SequenceLDhot: detecting recombination hotspots. |
Q24630443 | Shared and unique components of human population structure and genome-wide signals of positive selection in South Asia |
Q24651949 | Signals of recent positive selection in a worldwide sample of human populations |
Q34153592 | Signatures of positive selection apparent in a small sample of human exomes |
Q33862553 | Similarity in recombination rate estimates highly correlates with genetic differentiation in humans |
Q35898620 | Similarity-based multimarker association tests for continuous traits. |
Q31125474 | Simulating association studies: a data-based resampling method for candidate regions or whole genome scans |
Q34590469 | Simulating gene trees under the multispecies coalescent and time-dependent migration |
Q33546641 | Simulating gene-environment interactions in complex human diseases |
Q37480771 | Simulation of genomes: a review. |
Q33354962 | Simultaneous analysis of all SNPs in genome-wide and re-sequencing association studies |
Q35862959 | Small Sample Kernel Association Tests for Human Genetic and Microbiome Association Studies |
Q24678953 | Statistical evaluation of alternative models of human evolution |
Q35919633 | Strong Selection at MHC in Mexicans since Admixture |
Q34569870 | Sum of parts is greater than the whole: inference of common genetic history of populations |
Q36202029 | Systematic underestimation of the age of selected alleles |
Q24678506 | TLR4 polymorphisms, infectious diseases, and evolutionary pressure during migration of modern humans |
Q31115682 | Tag SNP selection for candidate gene association studies using HapMap and gene resequencing data |
Q36010533 | Testing Rare-Variant Association without Calling Genotypes Allows for Systematic Differences in Sequencing between Cases and Controls |
Q50968371 | Testing the effect of rare compound-heterozygous and recessive mutations in case--parent sequencing studies. |
Q37025075 | The Complex Admixture History and Recent Southern Origins of Siberian Populations |
Q21090229 | The case for selection at CCR5-Delta32 |
Q37636303 | The deleterious mutation load is insensitive to recent population history |
Q30577440 | The effect of genomic inversions on estimation of population genetic parameters from SNP data |
Q33895392 | The effect of recent admixture on inference of ancient human population history |
Q47335562 | The effective size of the Icelandic population and the prospects for LD mapping: inference from unphased microsatellite markers |
Q30853607 | The effects of demography and long-term selection on the accuracy of genomic prediction with sequence data |
Q35514258 | The genetic legacy of the expansion of Turkic-speaking nomads across Eurasia |
Q60046260 | The impact of a fine-scale population stratification on rare variant association test results |
Q37628796 | The impact of accelerating faster than exponential population growth on genetic variation |
Q46816983 | The impact of natural selection on an ABCC11 SNP determining earwax type. |
Q36935092 | The impact of natural selection on health and disease: uses of the population genetics approach in humans |
Q42118230 | The light skin allele of SLC24A5 in South Asians and Europeans shares identity by descent |
Q41809234 | The promise and limitations of population exomics for human evolution studies |
Q21145001 | The role of geography in human adaptation |
Q36993031 | The signature of long-standing balancing selection at the human defensin beta-1 promoter. |
Q24599166 | The timing of pigmentation lightening in Europeans |
Q42135854 | The value of statistical or bioinformatics annotation for rare variant association with quantitative trait |
Q42369086 | To identify associations with rare variants, just WHaIT: Weighted haplotype and imputation-based tests |
Q46650409 | Tracing genetic history of modern humans using X-chromosome lineages |
Q26828744 | Two-phase and family-based designs for next-generation sequencing studies |
Q38606760 | Unified Sequence-Based Association Tests Allowing for Multiple Functional Annotations and Meta-Analysis of Noncoding Variation in Metabochip Data |
Q43731365 | Using maximal segmental score in genome-wide association studies |
Q34000914 | Utilizing population controls in rare-variant case-parent association tests |
Q53093415 | Variants in SNAP25 are targets of natural selection and influence verbal performances in women. |
Q28603568 | Whole-genome sequence analyses of Western Central African Pygmy hunter-gatherers reveal a complex demographic history and identify candidate genes under positive natural selection |
Q35927954 | Widely distributed noncoding purifying selection in the human genome |
Q37119639 | Widespread balancing selection and pathogen-driven selection at blood group antigen genes |
Q91639265 | metaFARVAT: An Efficient Tool for Meta-Analysis of Family-Based, Case-Control, and Population-Based Rare Variant Association Studies |
Q51927442 | msHOT: modifying Hudson's ms simulator to incorporate crossover and gene conversion hotspots. |
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