Epigenetic regulation of serotype expression antagonizes transcriptome dynamics in Paramecium tetraurelia.

scientific article published on 31 July 2015

Epigenetic regulation of serotype expression antagonizes transcriptome dynamics in Paramecium tetraurelia. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1093/DNARES/DSV014
P932PMC publication ID4535620
P698PubMed publication ID26231545
P5875ResearchGate publication ID280613883

P50authorKarl NordströmQ59534711
Martin SimonQ61172931
P2093author name stringMarcel H Schulz
Miriam Cheaib
Azim Dehghani Amirabad
P2860cites workGlobal trends of whole-genome duplications revealed by the ciliate Paramecium tetraureliaQ22122232
MEGA6: Molecular Evolutionary Genetics Analysis version 6.0Q24498082
The Pfam protein families databaseQ24619716
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Paramecium caudatum acquires heat-shock resistance in ciliary movement by infection with the endonuclear symbiotic bacterium Holospora obtusaQ81312888
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2Q29547403
REVIGO summarizes and visualizes long lists of gene ontology termsQ29614817
Phenotypic Plasticity: Molecular Mechanisms and Adaptive SignificanceQ30052420
Ontologizer 2.0--a multifunctional tool for GO term enrichment analysis and data explorationQ31156999
Comparison of gene expression of Paramecium bursaria with and without Chlorella variabilis symbionts.Q33642219
Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithmsQ33829375
Distinct RNA-dependent RNA polymerases are required for RNAi triggered by double-stranded RNA versus truncated transgenes in Paramecium tetraurelia.Q33959415
Expression cartography of human tissues using self organizing mapsQ33973028
Histone supply regulates S phase timing and cell cycle progressionQ34147175
Protein folding in the cytoplasm and the heat shock responseQ34152827
Nucleosome loss leads to global transcriptional up-regulation and genomic instability during yeast agingQ34404678
Convergent evolution of heat-inducibility during subfunctionalization of the Hsp70 gene family.Q34596491
Evidence for the requirement of protein synthesis and protein kinase activity in the temperature regulated stability of a Tetrahymena surface protein mRNA.Q34742685
Lipids and lipid metabolism in eukaryotic algaeQ36402813
Structure and sequence of the H surface protein gene of Paramecium and comparison with related genes.Q36459447
Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: a somatic view of the germlineQ36517951
Heterochromatin-mediated control of virulence gene expression.Q36640419
Antigenic variation in ciliates: antigen structure, function, expression.Q36735705
mRNA stability plays a major role in regulating the temperature-specific expression of a Tetrahymena thermophila surface proteinQ36781209
Differential expression of histone H3 genes and selective association of the variant H3.7 with a specific sequence class in Stylonychia macronuclear developmentQ37569064
The control of histone gene expression.Q38027976
Unicellular eukaryotes as models in cell and molecular biology: critical appraisal of their past and future value.Q38188212
Epigenetic regulation of stem cells : the role of chromatin in cell differentiationQ39414550
Telomere shortening and telomere position effect in mild ring 17 syndromeQ41822254
Phenotypic plasticity in development and evolution: facts and concepts. IntroductionQ42922360
Genomic characterization of variable surface antigens reveals a telomere position effect as a prerequisite for RNA interference-mediated silencing in Paramecium tetraurelia.Q43010455
Systems-wide analysis of acclimation responses to long-term heat stress and recovery in the photosynthetic model organism Chlamydomonas reinhardtii.Q43528508
Genome-defence small RNAs exapted for epigenetic mating-type inheritance.Q46896851
The endosymbiotic bacterium Holospora obtusa enhances heat-shock gene expression of the host Paramecium caudatumQ47635142
New insights into the phylogeny of eukaryotes based on ciliate Hsp70 sequencesQ48028104
Dynamic chromatin remodelling of ciliate macronuclear DNA as determined by an optimized chromatin immunoprecipitation (ChIP) method for Paramecium tetraurelia.Q51533649
Micronucleus-specific bacterium Holospora elegans irreversibly enhances stress gene expression of the host Paramecium caudatum.Q53426322
Cutadapt removes adapter sequences from high-throughput sequencing readsQ55953584
P4510describes a project that usesDESeq2Q113018293
P433issue4
P407language of work or nameEnglishQ1860
P921main subjectRNA sequencingQ2542347
Paramecium tetraureliaQ64225534
P304page(s)293-305
P577publication date2015-07-31
P1433published inDNA ResearchQ5205732
P1476titleEpigenetic regulation of serotype expression antagonizes transcriptome dynamics in Paramecium tetraurelia
P478volume22

Reverse relations

cites work (P2860)
Q64060914Automated analysis of small RNA datasets with RAPID
Q53402388Cultivation Conditions Can Cause a Shift from Mutualistic to Parasitic Behavior in the Symbiosis Between Paramecium and Its Bacterial Symbiont Caedibacter taeniospiralis.
Q55099767Environmental Temperature Controls Accumulation of Transacting siRNAs Involved in Heterochromatin Formation.
Q39441714Evolutionary Cell Biology of Proteins from Protists to Humans and Plants.
Q93103710Exogenous RNAi mechanisms contribute to transcriptome adaptation by phased siRNA clusters in Paramecium
Q49489420More than the 'killer trait': infection with the bacterial endosymbiont Caedibacter taeniospiralis causes transcriptomic modulation in Paramecium host
Q28596615Two sets of RNAi components are required for heterochromatin formation in trans triggered by truncated transgenes
Q90260179What's genetic variation got to do with it? Starvation-induced self-fertilization enhances survival in Paramecium

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