scholarly article | Q13442814 |
P6179 | Dimensions Publication ID | 1091575814 |
P356 | DOI | 10.1038/S41598-017-11206-Z |
P932 | PMC publication ID | 5595811 |
P698 | PubMed publication ID | 28900227 |
P50 | author | Edoardo Bertolini | Q56056815 |
P2093 | author name string | Mario Enrico Pè | |
Concetta De Quattro | |||
P2860 | cites work | Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes | Q47319442 |
Discovery and annotation of long noncoding RNAs | Q47573961 | ||
A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis | Q48068201 | ||
Long noncoding RNAs and their proposed functions in fibre development of cotton (Gossypium spp.). | Q50589433 | ||
Widespread long noncoding RNAs as endogenous target mimics for microRNAs in plants. | Q50758425 | ||
Interplay of SLIM1 and miR395 in the regulation of sulfate assimilation in Arabidopsis. | Q54604638 | ||
Cutadapt removes adapter sequences from high-throughput sequencing reads | Q55953584 | ||
miRNA Target Prediction in Plants | Q57822735 | ||
Primary transcripts of microRNAs encode regulatory peptides | Q59085442 | ||
Comparative transcriptomics of three Poaceae species reveals patterns of gene expression evolution | Q63640716 | ||
CACTA transposons in Triticeae. A diverse family of high-copy repetitive elements | Q73392630 | ||
An extensive evaluation of read trimming effects on Illumina NGS data analysis | Q21559489 | ||
The rise of regulatory RNA | Q22121998 | ||
The landscape of long noncoding RNAs in the human transcriptome | Q22122065 | ||
Genome sequencing and analysis of the model grass Brachypodium distachyon | Q22122196 | ||
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression | Q24608592 | ||
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks | Q24633890 | ||
TopHat: discovering splice junctions with RNA-Seq | Q24655505 | ||
Rfam: an RNA family database | Q24682045 | ||
Promoter features related to tissue specificity as measured by Shannon entropy | Q24797793 | ||
Plant MPSS databases: signature-based transcriptional resources for analyses of mRNA and small RNA | Q25255243 | ||
Biogenesis, turnover, and mode of action of plant microRNAs | Q26824566 | ||
RNA-Seq technology and its application in fish transcriptomics | Q26825688 | ||
A survey of the sorghum transcriptome using single-molecule long reads | Q27315231 | ||
Genome regulation by long noncoding RNAs. | Q27691812 | ||
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data | Q27860819 | ||
Biogenesis of small RNAs in animals | Q27861013 | ||
The transcriptional landscape of the mammalian genome | Q27861110 | ||
Target mimicry provides a new mechanism for regulation of microRNA activity | Q28237268 | ||
Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution | Q28241731 | ||
Pfam: the protein families database | Q28660698 | ||
miRBase: annotating high confidence microRNAs using deep sequencing data | Q28660701 | ||
Clusters and superclusters of phased small RNAs in the developing inflorescence of rice | Q28752065 | ||
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses | Q29547647 | ||
VISTA: computational tools for comparative genomics | Q29547708 | ||
HTSeq--a Python framework to work with high-throughput sequencing data | Q29614489 | ||
CD-HIT: accelerated for clustering the next-generation sequencing data | Q29616664 | ||
A unified classification system for eukaryotic transposable elements | Q29617222 | ||
Molecular mechanisms of long noncoding RNAs | Q29618027 | ||
sPARTA: a parallelized pipeline for integrated analysis of plant miRNA and cleaved mRNA data sets, including new miRNA target-identification software | Q30000664 | ||
Genome-wide identification and functional analysis of lincRNAs acting as miRNA targets or decoys in maize | Q30387313 | ||
Defining diversity, specialization, and gene specificity in transcriptomes through information theory | Q33349697 | ||
Development of SSR markers and analysis of diversity in Turkish populations of Brachypodium distachyon | Q33481324 | ||
An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data | Q33518463 | ||
Genome-wide discovery and characterization of maize long non-coding RNAs. | Q33742695 | ||
The RIDL hypothesis: transposable elements as functional domains of long noncoding RNAs | Q33967993 | ||
The Sequence Read Archive: explosive growth of sequencing data. | Q34051179 | ||
Discovery of Novel Leaf Rust Responsive microRNAs in Wheat and Prediction of Their Target Genes | Q34087955 | ||
Genome-wide identification and functional prediction of novel and drought-responsive lincRNAs in Populus trichocarpa. | Q34089339 | ||
SQUAMOSA Promoter‐Binding Protein‐Like Transcription Factors: Star Players for Plant Growth and Development | Q34145908 | ||
Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA. | Q34153107 | ||
Functional interactions among microRNAs and long noncoding RNAs | Q34175339 | ||
Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing | Q34202641 | ||
Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution | Q34242790 | ||
Target mimics: an embedded layer of microRNA-involved gene regulatory networks in plants | Q34276382 | ||
Transcriptomics in the RNA-seq era. | Q34320924 | ||
Computational identification and functional predictions of long noncoding RNA in Zea mays | Q34391260 | ||
Genome-wide analysis uncovers regulation of long intergenic noncoding RNAs in Arabidopsis. | Q34470818 | ||
Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon. | Q34522259 | ||
Genome-wide screening and functional analysis identify a large number of long noncoding RNAs involved in the sexual reproduction of rice | Q34622310 | ||
Boron stress responsive microRNAs and their targets in barley | Q34651503 | ||
Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs | Q34699808 | ||
Software for computing and annotating genomic ranges | Q34945230 | ||
Pervasive transcription of the eukaryotic genome: functional indices and conceptual implications | Q35004344 | ||
Large-scale collection and analysis of full-length cDNAs from Brachypodium distachyon and integration with Pooideae sequence resources | Q35018240 | ||
Pseudogene-derived lncRNAs: emerging regulators of gene expression | Q35048014 | ||
Translational dynamics revealed by genome-wide profiling of ribosome footprints in Arabidopsis | Q35075061 | ||
Long non-coding RNAs as a source of new peptides | Q35176562 | ||
Spatiotemporally dynamic, cell-type-dependent premeiotic and meiotic phasiRNAs in maize anthers. | Q35189973 | ||
A dynamic evolutionary and functional landscape of plant phased small interfering RNAs. | Q35633301 | ||
A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice | Q35787178 | ||
RNA sequencing and functional analysis implicate the regulatory role of long non-coding RNAs in tomato fruit ripening | Q35867012 | ||
The many faces of long noncoding RNAs | Q35903450 | ||
CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine. | Q35914259 | ||
Rapid evolutionary turnover underlies conserved lncRNA-genome interactions | Q36480899 | ||
Transposable elements reveal a stem cell-specific class of long noncoding RNAs | Q36633093 | ||
The biological effects of simple tandem repeats: lessons from the repeat expansion diseases | Q37204533 | ||
Genome-wide analysis of tandem repeats in plants and green algae | Q37460744 | ||
The long-distance signaling of mineral macronutrients | Q37501215 | ||
Identification of new stress-induced microRNA and their targets in wheat using computational approach. | Q37529681 | ||
lincRNAs: genomics, evolution, and mechanisms | Q37584905 | ||
Genome-wide identification of long noncoding natural antisense transcripts and their responses to light in Arabidopsis | Q37614942 | ||
Long noncoding RNA: unveiling hidden layer of gene regulatory networks | Q37959132 | ||
Classification and comparison of small RNAs from plants | Q38075011 | ||
The four dimensions of noncoding RNA conservation. | Q38194745 | ||
Long noncoding RNAs in spermatogenesis: insights from recent high-throughput transcriptome studies | Q38203075 | ||
Evolutionary dynamics of coding and non-coding transcriptomes | Q38258263 | ||
Battles and hijacks: noncoding transcription in plants. | Q38409814 | ||
Circular RNAs: Identification, biogenesis and function. | Q38546674 | ||
The specificity of long noncoding RNA expression | Q38571483 | ||
Long non-coding RNAs and their functions in plants. | Q38581513 | ||
Unique features of long non-coding RNA biogenesis and function | Q38668939 | ||
Salmon provides fast and bias-aware quantification of transcript expression | Q38926825 | ||
Evolution to the rescue: using comparative genomics to understand long non-coding RNAs | Q38940313 | ||
Characterization of stress-responsive lncRNAs in Arabidopsis thaliana by integrating expression, epigenetic and structural features | Q38972100 | ||
Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred lines. | Q39029280 | ||
Molecular and physiological analysis of growth-limiting drought stress in Brachypodium distachyon leaves | Q39546662 | ||
Construction and analysis of cardiac hypertrophy-associated lncRNA-mRNA network based on competitive endogenous RNA reveal functional lncRNAs in cardiac hypertrophy | Q40001300 | ||
Sequence-based estimation of minisatellite and microsatellite repeat variability | Q40815198 | ||
Principles of long noncoding RNA evolution derived from direct comparison of transcriptomes in 17 species. | Q40955031 | ||
Genome-wide analysis of alternative splicing landscapes modulated during plant-virus interactions in Brachypodium distachyon. | Q41514063 | ||
Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing | Q41856334 | ||
A novel hypoxic stress-responsive long non-coding RNA transcribed by RNA polymerase III in Arabidopsis | Q42636436 | ||
The compact Brachypodium genome conserves centromeric regions of a common ancestor with wheat and rice | Q42675374 | ||
Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target | Q45101053 | ||
Correction: From Chemistry to Behavior. Molecular Structure and Bioactivity of Repellents against Ixodes ricinus Ticks | Q45849186 | ||
A miRNA involved in phosphate-starvation response in Arabidopsis | Q46219280 | ||
P2507 | corrigendum / erratum | Publisher Correction: Long noncoding RNAs in the model species Brachypodium distachyon | Q96640135 |
P4510 | describes a project that uses | edgeR | Q113334690 |
P433 | issue | 1 | |
P407 | language of work or name | English | Q1860 |
P921 | main subject | model organism | Q213907 |
Brachypodium distachyon | Q2352209 | ||
P304 | page(s) | 11252 | |
P577 | publication date | 2017-09-12 | |
P1433 | published in | Scientific Reports | Q2261792 |
P1476 | title | Long noncoding RNAs in the model species Brachypodium distachyon | |
P478 | volume | 7 |
Q92836887 | An Overview of Methodologies in Studying lncRNAs in the High-Throughput Era: When Acronyms ATTACK! |
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Q90745769 | Long Non-coding RNA in Plants in the Era of Reference Sequences |
Q92085561 | Prediction of regulatory long intergenic non-coding RNAs acting in trans through base-pairing interactions |
Q97419158 | The regulatory landscape of early maize inflorescence development |
Q64079551 | Transcriptome Analysis Suggests the Roles of Long Intergenic Non-coding RNAs in the Growth Performance of Weaned Piglets |
Q92591365 | Transcriptome and Phytochemical Analyses Provide New Insights Into Long Non-Coding RNAs Modulating Characteristic Secondary Metabolites of Oolong Tea (Camellia sinensis) in Solar-Withering |
Q55300097 | Transposon-Derived Non-coding RNAs and Their Function in Plants. |
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