| scholarly article | Q13442814 |
| P6179 | Dimensions Publication ID | 1090592864 |
| P356 | DOI | 10.1038/ISMEJ.2017.93 |
| P2888 | exact match | https://scigraph.springernature.com/pub.10.1038/ismej.2017.93 |
| P932 | PMC publication ID | 5607373 |
| P698 | PubMed publication ID | 28696425 |
| P50 | author | Mark P. Waldrop | Q55128642 |
| Christopher Conaway | Q59833038 | ||
| Rachel Mackelprang | Q91228831 | ||
| P2093 | author name string | Thomas A Douglas | |
| Alexander Burkert | |||
| Monica Haw | |||
| Tara Mahendrarajah | |||
| P2860 | cites work | Revised 14C dating of ice wedge growth in interior Alaska (USA) to MIS 2 reveals cold paleoclimate and carbon recycling in ancient permafrost terrain | Q106230227 |
| Reagent and laboratory contamination can critically impact sequence-based microbiome analyses | Q21146690 | ||
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| Ancient biomolecules from deep ice cores reveal a forested southern Greenland | Q24647596 | ||
| Bacterial variations on the methionine salvage pathway | Q24791798 | ||
| Bioinformatic approaches for functional annotation and pathway inference in metagenomics data | Q27002569 | ||
| Some like it cold: understanding the survival strategies of psychrophiles | Q27021642 | ||
| Cold shock stress-induced proteins in Bacillus subtilis | Q28488921 | ||
| Proxy comparison in ancient peat sediments: pollen, macrofossil and plant DNA | Q28649358 | ||
| Plasmids of psychrophilic and psychrotolerant bacteria and their role in adaptation to cold environments | Q28652561 | ||
| Extensive gene acquisition in the extremely psychrophilic bacterial species Psychroflexus torquis and the link to sea-ice ecosystem specialism | Q28659532 | ||
| DNA double-strand break repair at--15{degrees}C | Q28661488 | ||
| Anaerobic catabolism of aromatic compounds: a genetic and genomic view. | Q28755251 | ||
| Gene expression in the deep biosphere. | Q53102754 | ||
| Spermidine acetylation in response to a variety of stresses in Escherichia coli. | Q54694578 | ||
| A method for simultaneous measurement of soil bacterial abundances and community composition via 16S rRNA gene sequencing | Q56942420 | ||
| Metagenomic analyses of the late Pleistocene permafrost – additional tools for reconstruction of environmental conditions | Q57235198 | ||
| Bacteria in Permafrost | Q57235212 | ||
| The deep cold biosphere: facts and hypothesis | Q57235221 | ||
| Response of methanogenic archaea to Late Pleistocene and Holocene climate changes in the Siberian Arctic | Q58086196 | ||
| Genomic Insights into Cold Adaptation of Permafrost Bacteria | Q58317880 | ||
| Extended 14C Data Base and Revised CALIB 3.0 14C Age Calibration Program | Q58462180 | ||
| Permafrost Meta-Omics and Climate Change | Q58746929 | ||
| Endospore abundance, microbial growth and necromass turnover in deep sub-seafloor sediment | Q59076277 | ||
| Evaluation of quantitative recovery of bacterial cells and DNA from different lake sediments by Nycodenz density gradient centrifugation | Q61949733 | ||
| Gene expression profile of Vibrio cholerae in the cold stress-induced viable but non-culturable state | Q79946965 | ||
| The density of negative charge in the cell wall influences two-component signal transduction in Bacillus subtilis | Q80545276 | ||
| Vegetation and paleoclimate of the last interglacial period, central Alaska | Q94589806 | ||
| High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lake | Q37240522 | ||
| KEGG: new perspectives on genomes, pathways, diseases and drugs | Q37556832 | ||
| Everything old is new again: an update on current research on the Cpx envelope stress response | Q38159109 | ||
| Astrobiology through the ages of Mars: the study of terrestrial analogues to understand the habitability of Mars. | Q38465818 | ||
| Secretion systems in Gram-negative bacteria: structural and mechanistic insights. | Q38482854 | ||
| Bacterial genome replication at subzero temperatures in permafrost | Q39123854 | ||
| Molecular basis of thermosensing: a two-component signal transduction thermometer in Bacillus subtilis | Q39714737 | ||
| Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis. | Q39743843 | ||
| Use of fluorochromes for direct enumeration of total bacteria in environmental samples: past and present | Q40591468 | ||
| Bacterial growth at -15 °C; molecular insights from the permafrost bacterium Planococcus halocryophilus Or1 | Q40913942 | ||
| Transcriptional analysis of long-term adaptation of Yersinia enterocolitica to low-temperature growth | Q41454436 | ||
| An improved cell separation technique for marine subsurface sediments: applications for high-throughput analysis using flow cytometry and cell sorting. | Q41785299 | ||
| An inter-order horizontal gene transfer event enables the catabolism of compatible solutes by Colwellia psychrerythraea 34H. | Q41816638 | ||
| Phylogenetic analysis of bacteria preserved in a permafrost ice wedge for 25,000 years | Q41819682 | ||
| Predominant archaea in marine sediments degrade detrital proteins. | Q42436342 | ||
| Pseudomonas, the dominant polycyclic aromatic hydrocarbon-degrading bacteria isolated from Antarctic soils and the role of large plasmids in horizontal gene transfer | Q42680420 | ||
| Low-temperature recovery strategies for the isolation of bacteria from ancient permafrost sediments | Q43027746 | ||
| Recovery and quantification of bacterial cells associated with streambed sediments | Q44230436 | ||
| Reproduction and metabolism at - 10 degrees C of bacteria isolated from Siberian permafrost | Q44380436 | ||
| ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes | Q45717944 | ||
| Glacial survival of boreal trees in northern Scandinavia | Q45814063 | ||
| The microbial ecology of permafrost. | Q45935063 | ||
| Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica | Q46628145 | ||
| Bacterial community in ancient Siberian permafrost as characterized by culture and culture-independent methods | Q47198802 | ||
| Supercooled water brines within permafrost-an unknown ecological niche for microorganisms: a model for astrobiology. | Q47372318 | ||
| Viability, diversity and composition of the bacterial community in a high Arctic permafrost soil from Spitsbergen, Northern Norway | Q48077111 | ||
| Long-term persistence of bacterial DNA. | Q48212174 | ||
| Identification of ancient remains through genomic sequencing | Q28757524 | ||
| Fast and sensitive protein alignment using DIAMOND | Q29011988 | ||
| Trimmomatic: a flexible trimmer for Illumina sequence data | Q29547278 | ||
| Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 | Q29547403 | ||
| Search and clustering orders of magnitude faster than BLAST | Q29547431 | ||
| Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy | Q29547619 | ||
| Fifty thousand years of Arctic vegetation and megafaunal diet | Q29606791 | ||
| UPARSE: highly accurate OTU sequences from microbial amplicon reads | Q29616627 | ||
| An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea | Q29617497 | ||
| Microbial life in permafrost | Q30986342 | ||
| MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data | Q31109557 | ||
| Psychrophilic microorganisms: challenges for life | Q33238599 | ||
| Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw | Q33352444 | ||
| Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: a genome and transcriptome approach | Q33385517 | ||
| Statistical methods for detecting differentially abundant features in clinical metagenomic samples | Q33429043 | ||
| Identifying biologically relevant differences between metagenomic communities | Q33529361 | ||
| The genome sequence of Psychrobacter arcticus 273-4, a psychroactive Siberian permafrost bacterium, reveals mechanisms for adaptation to low-temperature growth | Q33768346 | ||
| The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses | Q33905710 | ||
| Polyamines: mysterious modulators of cellular functions | Q33920552 | ||
| Metabolic activity of permafrost bacteria below the freezing point | Q33987307 | ||
| Polyamines: ubiquitous polycations with unique roles in growth and stress responses | Q34019755 | ||
| Impact of fire on active layer and permafrost microbial communities and metagenomes in an upland Alaskan boreal forest. | Q34072003 | ||
| Microbes in thawing permafrost: the unknown variable in the climate change equation | Q34077176 | ||
| LPS remodeling is an evolved survival strategy for bacteria. | Q34268931 | ||
| Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill | Q34283016 | ||
| Global transcriptome analysis of the cold shock response of Shewanella oneidensis MR-1 and mutational analysis of its classical cold shock proteins | Q34697432 | ||
| Motility of Colwellia psychrerythraea strain 34H at subzero temperatures | Q35154631 | ||
| Metabolic pathways for the whole community | Q35210563 | ||
| Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes | Q35571696 | ||
| Recent developments in bacterial cold-shock response | Q35761291 | ||
| Role of Spermidine in Overwintering of Cyanobacteria | Q35914193 | ||
| Ancient low-molecular-weight organic acids in permafrost fuel rapid carbon dioxide production upon thaw | Q36300451 | ||
| Migration and horizontal gene transfer divide microbial genomes into multiple niches. | Q36358076 | ||
| Mechanism of bacterial adaptation to low temperature | Q36440930 | ||
| Putrescine catabolism is a metabolic response to several stresses in Escherichia coli. | Q36788303 | ||
| Physiological polyamines: simple primordial stress molecules | Q36924386 | ||
| P275 | copyright license | Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International | Q24082749 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P433 | issue | 10 | |
| P921 | main subject | permafrost | Q179918 |
| metagenomics | Q903778 | ||
| P304 | page(s) | 2305-2318 | |
| P577 | publication date | 2017-07-11 | |
| P1433 | published in | The ISME Journal | Q7741240 |
| P1476 | title | Microbial survival strategies in ancient permafrost: insights from metagenomics | |
| P478 | volume | 11 |
| Q57799766 | Bacterial and archaeal community structures in perennial cave ice |
| Q66630173 | Biomarker Profiling of Microbial Mats in the Geothermal Band of Cerro Caliente, Deception Island (Antarctica): Life at the Edge of Heat and cold. |
| Q92404648 | Contrasting Winter Versus Summer Microbial Communities and Metabolic Functions in a Permafrost Thaw Lake |
| Q56395316 | Long-term in situ permafrost thaw effects on bacterial communities and potential aerobic respiration |
| Q89575285 | Metagenomic Analysis of Microbial Community Compositions and Cold-Responsive Stress Genes in Selected Antarctic Lacustrine and Soil Ecosystems |
| Q89589911 | Methanogenic response to long-term permafrost thaw is determined by paleoenvironment |
| Q56395727 | Non-Psychrophilic Methanogens Capable of Growth Following Long-Term Extreme Temperature Changes, with Application to Mars |
| Q57213207 | On Controls in Ancient Microbiome Studies, and Microbial Resilience in Ancient Samples |
| Q99637160 | Optimization of subsampling, decontamination, and DNA extraction of difficult peat and silt permafrost samples |
| Q92450949 | Predominance of Anaerobic, Spore-Forming Bacteria in Metabolically Active Microbial Communities from Ancient Siberian Permafrost |
| Q90673621 | Prokaryotic community in Pleistocene ice wedges of Mammoth Mountain |
| Q53702463 | Reporting Key Features in Cold-Adapted Bacteria. |
| Q64120197 | Sublimation of terrestrial permafrost and the implications for ice-loss processes on Mars |
| Q94468539 | The role of changing temperature in microbial metabolic processes during permafrost thaw |
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