scholarly article | Q13442814 |
P50 | author | Joseph B Margolick | Q89374231 |
David C. Nickle | Q106615189 | ||
Daniel Shriner | Q56456791 | ||
James Mullins | Q57555076 | ||
P2093 | author name string | Mark A Jensen | |
John E Mittler | |||
Raj Shankarappa | |||
P2860 | cites work | EVOLUTION IN MENDELIAN POPULATIONS | Q5418627 |
High levels of HIV-1 in plasma during all stages of infection determined by competitive PCR | Q22242246 | ||
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism | Q24532326 | ||
Statistical tests of neutrality of mutations | Q24532850 | ||
Codon-substitution models for heterogeneous selection pressure at amino acid sites | Q27473194 | ||
Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody | Q27759364 | ||
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions | Q27860462 | ||
MEGA2: molecular evolutionary genetics analysis software | Q27860788 | ||
On the number of segregating sites in genetical models without recombination | Q28206543 | ||
The hitch-hiking effect of a favourable gene | Q28241578 | ||
Antiviral pressure exerted by HIV-1-specific cytotoxic T lymphocytes (CTLs) during primary infection demonstrated by rapid selection of CTL escape virus | Q28302762 | ||
Phylogenetic methods come of age: testing hypotheses in an evolutionary context | Q28307067 | ||
Estimation of effective population size of HIV-1 within a host: a pseudomaximum-likelihood approach | Q28769006 | ||
Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection | Q29547349 | ||
HIV-1 dynamics in vivo: virion clearance rate, infected cell life-span, and viral generation time | Q29547822 | ||
Rapid turnover of plasma virions and CD4 lymphocytes in HIV-1 infection | Q29547852 | ||
Viral dynamics in human immunodeficiency virus type 1 infection | Q29547908 | ||
DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis | Q29615363 | ||
HIV population dynamics in vivo: implications for genetic variation, pathogenesis, and therapy | Q29616404 | ||
Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene | Q29617599 | ||
The "hitchhiking effect" revisited | Q30004196 | ||
Maximum likelihood estimation of recombination rates from population data. | Q30619350 | ||
Potential impact of recombination on sitewise approaches for detecting positive natural selection | Q59192521 | ||
Gene flow and genetic drift in a species subject to frequent local extinctions | Q67057369 | ||
Selective pressure exerted by immunodominant HIV-1-specific cytotoxic T lymphocyte responses during primary infection drives genetic variation restricted to the cognate epitope | Q73170441 | ||
A method for detecting positive selection at single amino acid sites | Q73185955 | ||
Anti-HIV type 1 memory cytotoxic T lymphocyte responses associated with changes in CD4+ T cell numbers in progression of HIV type 1 infection | Q77586128 | ||
Improved estimates for HIV-1 clearance rate and intracellular delay | Q78131183 | ||
Identification of inflections in T-cell counts among HIV-1-infected individuals and relationship with progression to clinical AIDS | Q33558553 | ||
Frequent detection of escape from cytotoxic T-lymphocyte recognition in perinatal human immunodeficiency virus (HIV) type 1 transmission: the ariel project for the prevention of transmission of HIV from mother to infant. | Q33647187 | ||
Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection | Q33825654 | ||
The hitchhiking effect on the site frequency spectrum of DNA polymorphisms. | Q33965382 | ||
Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling. | Q33965595 | ||
New statistical tests of neutrality for DNA samples from a population. | Q33967482 | ||
The Multicenter AIDS Cohort Study: rationale, organization, and selected characteristics of the participants. | Q34173118 | ||
Transition between stochastic evolution and deterministic evolution in the presence of selection: general theory and application to virology. | Q34174981 | ||
Human immunodeficiency virus type 1 recombination: rate, fidelity, and putative hot spots | Q34355430 | ||
Gene genealogies in a metapopulation | Q34518475 | ||
Maximum-likelihood estimation of migration rates and effective population numbers in two populations using a coalescent approach | Q34607031 | ||
Consequences of recombination on traditional phylogenetic analysis. | Q34610694 | ||
Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites. | Q34617942 | ||
Analysis of HIV-1 env gene sequences reveals evidence for a low effective number in the viral population | Q36025234 | ||
Genetic drift and within-host metapopulation dynamics of HIV-1 infection | Q36259922 | ||
Quantitation of human immunodeficiency virus type 1 infection kinetics | Q36686530 | ||
Multiple modes of cellular activation and virus transmission in HIV infection: a role for chronically and latently infected cells in sustaining viral replication | Q37398983 | ||
Virus-specific cytotoxic T-lymphocyte responses select for amino-acid variation in simian immunodeficiency virus Env and Nef. | Q38318792 | ||
Discontinuous sequence change of human immunodeficiency virus (HIV) type 1 env sequences in plasma viral and lymphocyte-associated proviral populations in vivo: implications for models of HIV pathogenesis. | Q40113553 | ||
Forward mutation rate of human immunodeficiency virus type 1 in a T lymphoid cell line | Q41219560 | ||
Factors underlying spontaneous inactivation and susceptibility to neutralization of human immunodeficiency virus | Q41611077 | ||
Natural selection on the gag, pol, and env genes of human immunodeficiency virus 1 (HIV-1). | Q44930504 | ||
Antigenic oscillations and shifting immunodominance in HIV-1 infections. | Q45869472 | ||
Variances of the average numbers of nucleotide substitutions within and between populations. | Q52534418 | ||
HIV-1 evolution and disease progression. | Q55066829 | ||
Selection forces and constraints on retroviral sequence variation. | Q55239815 | ||
Failure of T-cell homeostasis preceding AIDS in HIV-1 infection | Q57313905 | ||
P433 | issue | 3 | |
P407 | language of work or name | English | Q1860 |
P921 | main subject | genetic drift | Q486420 |
P304 | page(s) | 1155-1164 | |
P577 | publication date | 2004-03-01 | |
P1433 | published in | Genetics | Q3100575 |
P1476 | title | Influence of random genetic drift on human immunodeficiency virus type 1 env evolution during chronic infection | |
P478 | volume | 166 |
Q36337888 | Accurate predictions of population-level changes in sequence and structural properties of HIV-1 Env using a volatility-controlled diffusion model. |
Q33988303 | Daily sampling of an HIV-1 patient with slowly progressing disease displays persistence of multiple env subpopulations consistent with neutrality |
Q44138476 | Emergence of new strains of Watermelon mosaic virus in South-eastern France: evidence for limited spread but rapid local population shift |
Q34120725 | Estimating Frequencies of Minority Nevirapine-Resistant Strains in Chronically HIV-1-Infected Individuals Naïve to Nevirapine by Using Stochastic Simulations and a Mathematical Model |
Q40016358 | Evolution of the human immunodeficiency virus envelope gene is dominated by purifying selection. |
Q33853183 | Fitness epistasis and constraints on adaptation in a human immunodeficiency virus type 1 protein region |
Q42239239 | Fitness valleys constrain HIV-1's adaptation to its secondary chemokine coreceptor. |
Q35773113 | Genetic Consequences of Antiviral Therapy on HIV-1. |
Q33419841 | Genetic drift of HIV populations in culture |
Q57877709 | Genetic evolution of HIV in patients remaining on a stable HAART regimen despite insufficient viral suppression |
Q37123158 | HIV populations are large and accumulate high genetic diversity in a nonlinear fashion |
Q51767138 | HLA-mediated control of HIV and HIV adaptation to HLA. |
Q37102101 | Human Immunodeficiency Virus Immune Cell Receptors, Coreceptors, and Cofactors: Implications for Prevention and Treatment. |
Q37097501 | Implications of recombination for HIV diversity |
Q37138341 | Intra-host evolutionary rates in HIV-1C env and gag during primary infection. |
Q82869423 | Minimization of genetic distances by the consensus, ancestral, and center-of-tree (COT) sequences for HIV-1 variants within an infected individual and the design of reagents to test immune reactivity |
Q34357919 | Molecular clock-like evolution of human immunodeficiency virus type 1. |
Q47130258 | Molecular evolution of HIV-1 integrase during the 20 years prior to the first approval of integrase inhibitors. |
Q40074972 | New insights into HCV replication in original cells from Aedes mosquitoes |
Q33247446 | On modeling HIV and T cells in vivo: assessing causal estimators in vaccine trials |
Q28469250 | Optimal timing and duration of induction therapy for HIV-1 infection |
Q30832656 | Patterns of genetic variation in populations of infectious agents |
Q30834495 | Phylodynamics of HIV-1 in lymphoid and non-lymphoid tissues reveals a central role for the thymus in emergence of CXCR4-using quasispecies |
Q35260522 | Profound differences in virus population genetics correspond to protection from CD4 decline resulting from feline lentivirus coinfection |
Q28472689 | Recombination rate and selection strength in HIV intra-patient evolution |
Q38623777 | Selection dramatically reduces effective population size in HIV-1 infection |
Q39290859 | Sequential turnover of human immunodeficiency virus type 1 env throughout the course of infection |
Q45415196 | Simian immunodeficiency virus envelope compartmentalizes in brain regions independent of neuropathology |
Q40015494 | Site-specific amino acid frequency, fitness and the mutational landscape model of adaptation in human immunodeficiency virus type 1. |
Q34092679 | Stochastic interplay between mutation and recombination during the acquisition of drug resistance mutations in human immunodeficiency virus type 1 |
Q28483749 | Stochastic simulations suggest that HIV-1 survives close to its error threshold |
Q33274194 | Synonymous substitution rates predict HIV disease progression as a result of underlying replication dynamics |
Q33797892 | Taking multiple infections of cells and recombination into account leads to small within-host effective-population-size estimates of HIV-1 |
Q42593675 | The dynamics of HIV-1 adaptation in early infection. |
Q37481983 | The intra-host evolutionary and population dynamics of human immunodeficiency virus type 1: a phylogenetic perspective |
Q33281050 | Understanding the evolutionary fate of finite populations: the dynamics of mutational effects |
Q43518634 | Waiting times for the appearance of cytotoxic T-lymphocyte escape mutants in chronic HIV-1 infection |
Search more.