| scholarly article | Q13442814 |
| P50 | author | Chi Zhang | Q51371834 |
| P2093 | author name string | Song Liu | |
| Yaoqi Zhou | |||
| Hongyi Zhou | |||
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| P433 | issue | 2 | |
| P304 | page(s) | 400-411 | |
| P577 | publication date | 2004-02-01 | |
| P1433 | published in | Protein Science | Q7251445 |
| P1476 | title | An accurate, residue-level, pair potential of mean force for folding and binding based on the distance-scaled, ideal-gas reference state | |
| P478 | volume | 13 |
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| Q25256785 | A decoy set for the thermostable subdomain from chicken villin headpiece, comparison of different free energy estimators |
| Q30360329 | A free-rotating and self-avoiding chain model for deriving statistical potentials based on protein structures |
| Q51900421 | A knowledge-based potential function predicts the specificity and relative binding energy of RNA-binding proteins. |
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| Q42554397 | An all-atom knowledge-based energy function for protein-DNA threading, docking decoy discrimination, and prediction of transcription-factor binding profiles |
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| Q30368864 | Discriminative learning for protein conformation sampling. |
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| Q35757341 | GARN: Sampling RNA 3D Structure Space with Game Theory and Knowledge-Based Scoring Strategies |
| Q42212125 | Homology modelling of protein-protein complexes: a simple method and its possibilities and limitations. |
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| Q33533367 | Limitations of Ab initio predictions of peptide binding to MHC class II molecules |
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| Q33732145 | Optimizing structural modeling for a specific protein scaffold: knottins or inhibitor cystine knots |
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| Q21562146 | Potentials of mean force for protein structure prediction vindicated, formalized and generalized |
| Q36692693 | Predictive Bcl-2 family binding models rooted in experiment or structure |
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| Q24801775 | Quantitative evaluation of protein-DNA interactions using an optimized knowledge-based potential |
| Q33292243 | Recognizing protein-protein interfaces with empirical potentials and reduced amino acid alphabets |
| Q36389629 | Reduced C(beta) statistical potentials can outperform all-atom potentials in decoy identification |
| Q42582708 | Refining homology models by combining replica-exchange molecular dynamics and statistical potentials |
| Q33279691 | Scoring predictive models using a reduced representation of proteins: model and energy definition. |
| Q42257042 | Scoring protein interaction decoys using exposed residues (SPIDER): a novel multibody interaction scoring function based on frequent geometric patterns of interfacial residues |
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| Q42380648 | Sequence composition and environment effects on residue fluctuations in protein structures |
| Q30391881 | Sorting protein decoys by machine-learning-to-rank |
| Q34260787 | Structural informatics, modeling, and design with an open-source Molecular Software Library (MSL). |
| Q30355328 | Structure prediction of helical transmembrane proteins at two length scales. |
| Q28476470 | Structure-based drug design of a new chemical class of small molecules active against influenza A nucleoprotein in vitro and in vivo |
| Q53213841 | Study of protein structural deformations under external mechanical perturbations by a coarse-grained simulation method. |
| Q33856208 | Target-specific support vector machine scoring in structure-based virtual screening: computational validation, in vitro testing in kinases, and effects on lung cancer cell proliferation |
| Q30419445 | Template-based protein structure modeling using the RaptorX web server. |
| Q33781091 | Towards universal structure-based prediction of class II MHC epitopes for diverse allotypes |
| Q36379128 | Using the unfolded state as the reference state improves the performance of statistical potentials |
| Q30424100 | eThread: a highly optimized machine learning-based approach to meta-threading and the modeling of protein tertiary structures |
| Q30352493 | eVolver: an optimization engine for evolving protein sequences to stabilize the respective structures. |
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