Molecular mechanisms of resistance: free energy calculations of mutation effects on inhibitor binding to HIV-1 protease

scientific article published on August 1998

Molecular mechanisms of resistance: free energy calculations of mutation effects on inhibitor binding to HIV-1 protease is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1002/PRO.5560070809
P932PMC publication ID2144074
P698PubMed publication ID10082371
P5875ResearchGate publication ID13209431

P2093author name stringJ W Erickson
S K Burt
I A Topol
S W Rick
P2860cites workNovel binding mode of highly potent HIV-proteinase inhibitors incorporating the (R)-hydroxyethylamine isostereQ27656274
Conserved folding in retroviral proteases: crystal structure of a synthetic HIV-1 proteaseQ27696384
Crystal structure at 1.9-A resolution of human immunodeficiency virus (HIV) II protease complexed with L-735,524, an orally bioavailable inhibitor of the HIV proteasesQ27730719
Similar hydrophobic replacements of Leu99 and Phe153 within the core of T4 lysozyme have different structural and thermodynamic consequencesQ27732090
Structure of HIV-1 protease with KNI-272, a tight-binding transition-state analog containing allophenylnorstatineQ27732560
In vitro selection and characterization of human immunodeficiency virus type 1 (HIV-1) isolates with reduced sensitivity to hydroxyethylamino sulfonamide inhibitors of HIV-1 aspartyl proteaseQ28367941
L-735,524: an orally bioavailable human immunodeficiency virus type 1 protease inhibitorQ28369664
Impaired fitness of human immunodeficiency virus type 1 variants with high-level resistance to protease inhibitorsQ28379411
Solvent-accessible surfaces of proteins and nucleic acidsQ29614464
In vivo emergence of HIV-1 variants resistant to multiple protease inhibitorsQ29620622
Estimation of the maximum change in stability of globular proteins upon mutation of a hydrophobic residue to another of smaller sizeQ36278258
Relative differences in the binding free energies of human immunodeficiency virus 1 protease inhibitors: a thermodynamic cycle-perturbation approachQ37623814
Free energy via molecular simulation: applications to chemical and biomolecular systemsQ38648060
Structural and genetic analysis of protein stabilityQ40835248
Structure-based inhibitors of HIV-1 proteaseQ40835286
Angströms and caloriesQ41441731
A short-term study of the safety, pharmacokinetics, and efficacy of ritonavir, an inhibitor of HIV-1 protease. European-Australian Collaborative Ritonavir Study GroupQ42274436
Kinetic characterization and cross-resistance patterns of HIV-1 protease mutants selected under drug pressureQ42277211
Escape mutants of HIV-1 proteinase: enzymic efficiency and susceptibility to inhibitionQ42549394
Evaluating the energetics of empty cavities and internal mutations in proteinsQ42845592
Solution NMR evidence that the HIV-1 protease catalytic aspartyl groups have different ionization states in the complex formed with the asymmetric drug KNI-272.Q43452863
Determination of the relative binding free energies of peptide inhibitors to the HIV-1 proteaseQ46133892
Conic: a fast renderer for space-filling molecules with shadowsQ46906153
Internal cavities and buried waters in globular proteins.Q52638970
Application of free energy simulations to the binding of a transition-state-analogue inhibitor to HTV proteaseQ68207882
P433issue8
P304page(s)1750-1756
P577publication date1998-08-01
P1433published inProtein ScienceQ7251445
P1476titleMolecular mechanisms of resistance: free energy calculations of mutation effects on inhibitor binding to HIV-1 protease
P478volume7

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cites work (P2860)
Q51609848Analysis of HIV protease binding pockets based on 3D shape and electrostatic potential descriptors.
Q37319797Conformational selection and adaptation to ligand binding in T4 lysozyme cavity mutants
Q46121038Drug-resistant molecular mechanism of CRF01_AE HIV-1 protease due to V82F mutation
Q44238646Effect of atomic charge, solvation, entropy, and ligand protonation state on MM-PB(GB)SA binding energies of HIV protease.
Q56394569Simulation of protein association: Kinetic pathways towards crystal contacts
Q57991346Theoretical study of the amino acid interactions in the binding region of the trypsin–pancreatic trypsin inhibitor complex

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