| scholarly article | Q13442814 |
| P2093 | author name string | Jian Zhang | |
| Gevorg Grigoryan | |||
| P2860 | cites work | BLAST+: architecture and applications | Q21284368 |
| Design of a Novel Globular Protein Fold with Atomic-Level Accuracy | Q22242282 | ||
| The protein structure prediction problem could be solved using the current PDB library | Q22248093 | ||
| 3did: identification and classification of domain-based interactions of known three-dimensional structure | Q24607786 | ||
| CDD: a Conserved Domain Database for the functional annotation of proteins | Q24610576 | ||
| A series of PDB related databases for everyday needs | Q24613221 | ||
| Direct-coupling analysis of residue coevolution captures native contacts across many protein families | Q24627074 | ||
| Atomic-Level Protein Structure Refinement Using Fragment-Guided Molecular Dynamics Conformation Sampling | Q24627931 | ||
| Native protein sequences are close to optimal for their structures | Q24656322 | ||
| A revised set of potentials for beta-turn formation in proteins | Q24675540 | ||
| Protein design with fragment databases | Q37891434 | ||
| PepX: a structural database of non-redundant protein-peptide complexes | Q42934096 | ||
| Protein-peptide interactions adopt the same structural motifs as monomeric protein folds | Q44702234 | ||
| Computational redesign of protein-protein interaction specificity | Q47610852 | ||
| Backbone building from quadrilaterals: a fast and accurate algorithm for protein backbone reconstruction from alpha carbon coordinates | Q51920982 | ||
| Computer-aided design of a PDZ domain to recognize new target sequences. | Q52037989 | ||
| Global secondary structure packing angle bias in proteins | Q52955479 | ||
| Emergence of Preferred Structures in a Simple Model of Protein Folding | Q56517454 | ||
| The Fourier transform of a coiled-coil | Q62381214 | ||
| The designability of protein structures | Q73944439 | ||
| Backbone-backbone geometry of tertiary contacts between alpha-helices | Q80389891 | ||
| Computational Design of Virus-Like Protein Assemblies on Carbon Nanotube Surfaces | Q27668043 | ||
| Computation-guided backbone grafting of a discontinuous motif onto a protein scaffold | Q27675190 | ||
| WebLogo: A Sequence Logo Generator | Q27860646 | ||
| Protein structure comparison by alignment of distance matrices | Q27860798 | ||
| Dali server: conservation mapping in 3D | Q27860994 | ||
| Mapping the protein universe | Q27861112 | ||
| Parser for protein folding units | Q28239434 | ||
| The protein threading problem with sequence amino acid interaction preferences is NP-complete | Q28306028 | ||
| Predicting the tolerated sequences for proteins and protein interfaces using RosettaBackrub flexible backbone design | Q28914735 | ||
| Protein structure prediction using Rosetta | Q29616386 | ||
| Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions | Q29616398 | ||
| Data growth and its impact on the SCOP database: new developments | Q29619285 | ||
| Protein topology and stability define the space of allowed sequences. | Q30329464 | ||
| Twist and shear in beta-sheets and beta-ribbons. | Q30329991 | ||
| Classification schemes for protein structure and function. | Q30333134 | ||
| Local feature frequency profile: a method to measure structural similarity in proteins | Q30339044 | ||
| Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures. | Q30350148 | ||
| Alpha-alpha linking motifs and interhelical orientations. | Q30351250 | ||
| Potential energy functions for protein design. | Q30360687 | ||
| CC+: a relational database of coiled-coil structures. | Q30372511 | ||
| A periodic table of coiled-coil protein structures. | Q30373737 | ||
| FragBag, an accurate representation of protein structure, retrieves structural neighbors from the entire PDB quickly and accurately. | Q30385398 | ||
| Helix-sheet packing in proteins | Q30386084 | ||
| Structural characteristics of novel protein folds | Q30388562 | ||
| Structural comparison and classification of alpha-helical transmembrane domains based on helix interaction patterns | Q30390364 | ||
| Probing Designability via a Generalized Model of Helical Bundle Geometry | Q30394690 | ||
| Reconstruction of protein backbones from the BriX collection of canonical protein fragments | Q33335143 | ||
| Recent advances in computational protein design. | Q33907477 | ||
| The structural basis of peptide-protein binding strategies. | Q34099027 | ||
| Structural informatics, modeling, and design with an open‐source Molecular Software Library (MSL) | Q34260787 | ||
| The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution | Q34585750 | ||
| Helix-packing motifs in membrane proteins | Q35025263 | ||
| Natural selection of more designable folds: a mechanism for thermophilic adaptation | Q35170568 | ||
| Advances and pitfalls of protein structural alignment | Q37501173 | ||
| Why are some proteins structures so common? | Q37651521 | ||
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 21-40 | |
| P577 | publication date | 2013-01-01 | |
| P1433 | published in | Methods in Enzymology | Q2076903 |
| P1476 | title | Mining tertiary structural motifs for assessment of designability | |
| Mining Tertiary Structural Motifs for Assessment of Designability | |||
| P478 | volume | 523 |
| Q37146284 | A Compact Structure of Cytochrome c Trapped in a Lysine-Ligated State: Loop Refolding and Functional Implications of a Conformational Switch |
| Q27321421 | A real-time all-atom structural search engine for proteins |
| Q43832133 | Absolute free energies of biomolecules from unperturbed ensembles |
| Q38810159 | Algorithms for protein design |
| Q28830531 | Artificial Diiron Enzymes with a De Novo Designed Four-Helix Bundle Structure |
| Q30395950 | Computational Protein Design Through Grafting and Stabilization |
| Q35468530 | Computational design of selective peptides to discriminate between similar PDZ domains in an oncogenic pathway |
| Q35456726 | De novo design of a transmembrane Zn²⁺-transporting four-helix bundle |
| Q38718401 | Design of self-assembling transmembrane helical bundles to elucidate principles required for membrane protein folding and ion transport |
| Q52676244 | Diversity and motif conservation in protein 3D structural landscape: exploration by a new multivariate simulation method |
| Q30401554 | Protein structural motifs in prediction and design |
| Q30368904 | Rapid search for tertiary fragments reveals protein sequence-structure relationships |
| Q30371974 | The membrane- and soluble-protein helix-helix interactome: similar geometry via different interactions. |
Search more.