Identification of metabolic network models from incomplete high-throughput datasets

scientific article published on July 2011

Identification of metabolic network models from incomplete high-throughput datasets is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/bioinformatics/BerthoumieuxBJKC11
P356DOI10.1093/BIOINFORMATICS/BTR225
P724Internet Archive IDpubmed-PMC3117355
P932PMC publication ID3117355
P698PubMed publication ID21685069
P5875ResearchGate publication ID51230545

P50authorDaniel KahnQ60449783
Matteo BrilliQ30347686
P2093author name stringHidde de Jong
Eugenio Cinquemani
Sara Berthoumieux
P2860cites workOptimal re-design of primary metabolism in Escherichia coli using linlog kinetics.Q51597233
Derivation, identification and validation of a computational model of a novel synthetic regulatory network in yeast.Q51689540
Hybrid dynamic modeling of Escherichia coli central metabolic network combining Michaelis-Menten and approximate kinetic equations.Q51714258
Dynamic simulation and metabolic re-design of a branched pathway using linlog kinetics.Q51830021
Model reduction and a priori kinetic parameter identifiability analysis using metabolome time series for metabolic reaction networks with linlog kinetics.Q51870870
Non-linear PCA: a missing data approachQ31000721
A method for estimation of elasticities in metabolic networks using steady state and dynamic metabolomics data and linlog kineticsQ31087514
Much ado about nothing: A comparison of missing data methods and software to fit incomplete data regression modelsQ31107817
Missing data analysis: making it work in the real worldQ31165001
A Bayesian missing value estimation method for gene expression profile dataQ33194478
Towards a genome-scale kinetic model of cellular metabolismQ33527111
Bacterial adaptation through distributed sensing of metabolic fluxesQ34102801
Multiple high-throughput analyses monitor the response of E. coli to perturbationsQ34578020
Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihoodQ34985618
Approximative kinetic formats used in metabolic network modelingQ36186685
Systems biology: parameter estimation for biochemical modelsQ37392314
Topology of the global regulatory network of carbon limitation in Escherichia coliQ42519694
Bringing metabolic networks to life: convenience rate law and thermodynamic constraintsQ42983671
Challenges in lin-log modelling of glycolysis in Lactococcus lactisQ45491713
A quantitative approach to catabolite repression in Escherichia coliQ46786460
Translating biochemical network models between different kinetic formatsQ47232466
Effects of spatiotemporal variations on metabolic control: approximate analysis using (log)linear kinetic models.Q48756825
P275copyright licenseCreative Commons Attribution-NonCommercial 2.5 GenericQ19113746
P6216copyright statuscopyrightedQ50423863
P433issue13
P407language of work or nameEnglishQ1860
P921main subjectdata setQ1172284
metabolic networkQ2263094
P304page(s)i186-95
P577publication date2011-07-01
P1433published inBioinformaticsQ4914910
P1476titleIdentification of metabolic network models from incomplete high-throughput datasets
P478volume27

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cites work (P2860)
Q34118167Controversies in modern evolutionary biology: the imperative for error detection and quality control
Q58089423Estimation methods for heterogeneous cell population models in systems biology
Q26829854Identification of aberrant pathways and network activities from high-throughput data
Q28530233Identifying the Unknowns by Aligning Fragmentation Trees
Q37687449Mass spectrometry-based workflow for accurate quantification of Escherichia coli enzymes: how proteomics can play a key role in metabolic engineering
Q56698274Necessary conditions for multistationarity in discrete dynamical systems
Q51289578On the identifiability of metabolic network models.

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