Microalgal Metabolic Network Model Refinement through High-Throughput Functional Metabolic Profiling

scientific article published on 10 December 2014

Microalgal Metabolic Network Model Refinement through High-Throughput Functional Metabolic Profiling is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.3389/FBIOE.2014.00068
P932PMC publication ID4261833
P698PubMed publication ID25540776
P5875ResearchGate publication ID269405248

P50authorKourosh Salehi-AshtianiQ38155027
David R. NelsonQ58842145
P2093author name stringHong Cai
Amphun Chaiboonchoe
Kenan Jijakli
Bushra Saeed Dohai
P2860cites workAcidithiobacillus caldus sulfur oxidation model based on transcriptome analysis between the wild type and sulfur oxygenase reductase defective mutantQ21134512
Visualization and curve-parameter estimation strategies for efficient exploration of phenotype microarray kineticsQ21134690
The Chlamydomonas genome reveals the evolution of key animal and plant functionsQ22065869
Data, information, knowledge and principle: back to metabolism in KEGGQ24568332
UniProt: the Universal Protein knowledgebaseQ24598826
Phenotype microarrays for high-throughput phenotypic testing and assay of gene functionQ24619199
Global phenotypic characterization of bacteriaQ24654173
WoLF PSORT: protein localization predictorQ24684530
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0Q28246991
AlgaGEM--a genome-scale metabolic reconstruction of algae based on the Chlamydomonas reinhardtii genomeQ28260720
What is flux balance analysis?Q28275348
Computational approaches for microalgal biofuel optimization: a reviewQ28654886
Rationales and approaches for studying metabolism in eukaryotic microalgaeQ28655610
Metabolic network reconstruction of Chlamydomonas offers insight into light-driven algal metabolism.Q28743439
Applications of genome-scale metabolic reconstructionsQ29031028
Extracellular deamination of L-amino acids by Chlamydomonas reinhardtii cellsQ86656909
Ultraviolet radiation induces stress in etiolated Landoltia punctata, as evidenced by the presence of alanine, a universal stress signal: a ¹⁵N NMR studyQ88007466
Gut inflammation provides a respiratory electron acceptor for SalmonellaQ29615318
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA ToolboxQ29615372
Phytozome: a comparative platform for green plant genomicsQ29616763
Activities at the Universal Protein Resource (UniProt)Q29617787
Comparative metabolic systems analysis of pathogenic BurkholderiaQ30412173
Genome-wide functional annotation and structural verification of metabolic ORFeome of Chlamydomonas reinhardtiiQ30429644
Metabolic network analysis integrated with transcript verification for sequenced genomes.Q30431373
Metabolic systems analysis to advance algal biotechnologyQ30451439
ChlamyCyc: an integrative systems biology database and web-portal for Chlamydomonas reinhardtiiQ33437911
Characterization and differential expression of microRNAs elicited by sulfur deprivation in Chlamydomonas reinhardtiiQ34206735
Bioleaching review part A: progress in bioleaching: fundamentals and mechanisms of bacterial metal sulfide oxidation.Q34270917
opm: an R package for analysing OmniLog(R) phenotype microarray dataQ34348998
Cobalamin (coenzyme B12): synthesis and biological significanceQ34406233
Cytochrome f and plastocyanin: their sequence in the photosynthetic electron transport chain of Chlamydomonas reinhardiQ34421238
Integrated quantitative analysis of nitrogen stress response in Chlamydomonas reinhardtii using metabolite and protein profilingQ35094358
New technologies to assess genotype-phenotype relationshipsQ35097350
Algae need their vitaminsQ36560066
The metabolome of Chlamydomonas reinhardtii following induction of anaerobic H2 production by sulfur depletionQ37358120
Phenotype microarray technology and its application in industrial biotechnologyQ38190487
Asparagine assimilation is critical for intracellular replication and dissemination of FrancisellaQ39077525
Tetrathionate reduction and production of hydrogen sulfide from thiosulfateQ39659900
Stoichiometric interpretation of Escherichia coli glucose catabolism under various oxygenation rates.Q39858308
Archaeal tetrathionate hydrolase goes viral: secretion of a sulfur metabolism enzyme in the form of virus-like particlesQ42270926
Presence of FreeD-Amino Acids in MicroalgaeQ44428038
Comparison of the Biolog OmniLog Identification System and 16S ribosomal RNA gene sequencing for accuracy in identification of atypical bacteria of clinical originQ44855930
Role of a serine-type D-alanyl-D-alanine carboxypeptidase on the survival of Ochrobactrum sp. 11a under ionic and hyperosmotic stressQ45136369
Tiered regulation of sulfur deprivation responses in Chlamydomonas reinhardtii and identification of an associated regulatory factor.Q45138666
Systems-level analysis of nitrogen starvation-induced modifications of carbon metabolism in a Chlamydomonas reinhardtii starchless mutantQ45269925
Functional genomics of eukaryotic photosynthesis using insertional mutagenesis of Chlamydomonas reinhardtii.Q45969865
Metabolite profiling of Chlamydomonas reinhardtii under nutrient deprivationQ46818425
Carrier-mediated Uptake of Arginine and Urea by Volvox carteri f. nagariensisQ47940359
Insights into the evolution of vitamin B12 auxotrophy from sequenced algal genomes.Q50521175
D-amino acid-induced expression of D-amino acid oxidase in the yeast Schizosaccharomyces pombe.Q54327646
Computational Models of Algae Metabolism for Industrial ApplicationsQ54994809
How metabolomics can contribute to bio-processes: a proof of concept study for biomarkers discovery in the context of nitrogen-starved microalgae grown in photobioreactorsQ57653716
Systems Analysis of the Response of Photosynthesis, Metabolism, and Growth to an Increase in Irradiance in the Photosynthetic Model Organism Chlamydomonas reinhardtiiQ59723703
Carrier-mediated Uptake of Arginine and Urea by Chlamydomonas reinhardtiiQ83251973
P921main subjectmicrophyteQ589518
metabolic networkQ2263094
metabolic profilingQ116909045
P304page(s)68
P577publication date2014-12-10
P1433published inFrontiers in Bioengineering and BiotechnologyQ21971197
P1476titleMicroalgal Metabolic Network Model Refinement through High-Throughput Functional Metabolic Profiling
P478volume2

Reverse relations

cites work (P2860)
Q58763779Advances in metabolic modeling of oleaginous microalgae
Q28067621Algal Cell Factories: Approaches, Applications, and Potentials
Q41843622Editorial: Current Challenges in Modeling Cellular Metabolism
Q39636760Genome-Scale Metabolic Model for the Green Alga Chlorella vulgaris UTEX 395 Accurately Predicts Phenotypes under Autotrophic, Heterotrophic, and Mixotrophic Growth Conditions.
Q33869126Reconstruction of the microalga Nannochloropsis salina genome-scale metabolic model with applications to lipid production
Q30276470Systems level analysis of the Chlamydomonas reinhardtii metabolic network reveals variability in evolutionary co-conservation
Q33902487The genome and phenome of the green alga Chloroidium sp. UTEX 3007 reveal adaptive traits for desert acclimatization
Q40517001Whole-Genome Resequencing Reveals Extensive Natural Variation in the Model Green Alga Chlamydomonas reinhardtii.

Search more.