| scholarly article | Q13442814 |
| P356 | DOI | 10.1002/0471142700.NC0606S05 |
| P698 | PubMed publication ID | 18428867 |
| P2093 | author name string | S E Rokita | |
| P2860 | cites work | Sequence specificity, conformation, and recognition by HMG1 protein of major DNA interstrand cross-links of antitumor dinuclear platinum complexes | Q38313636 |
| Quantitative analysis of multiple-hit footprinting studies to characterize DNA conformational changes in protein-DNA complexes: application to DNA opening by Esigma70 RNA polymerase | Q38331912 | ||
| A genome-derived (gaa.ttc)24 trinucleotide block binds nuclear protein(s) specifically and forms triple helices. | Q38334121 | ||
| Chemical probes of the conformation of DNA modified by cis-diamminedichloroplatinum(II). | Q38345197 | ||
| Detection in vivo of protein-DNA interactions within the lac operon of Escherichia coli | Q38352860 | ||
| Cytosine-specific chemical probing of DNA using bromide and monoperoxysulfate | Q39718488 | ||
| Potassium permanganate and tetraethylammonium chloride are a safe and effective substitute for osmium tetroxide in solid-phase fluorescent chemical cleavage of mismatch | Q39720926 | ||
| Chemical display of thymine residues flipped out by DNA methyltransferases | Q39724595 | ||
| Neighboring base damage induced by permanganate oxidation of 8-oxoguanine in DNA. | Q39724652 | ||
| Reactivity of potassium permanganate and tetraethylammonium chloride with mismatched bases and a simple mutation detection protocol | Q39727818 | ||
| Base-specific reactions useful for DNA sequencing: methylene blue – sensitized photooxidation of guanine and osmium tetraoxide modification of thymine | Q40136954 | ||
| Molecular electrostatic potential of the nucleic acids | Q40317072 | ||
| Escherichia coli promoter opening and -10 recognition: mutational analysis of sigma70. | Q40387291 | ||
| Methylation of the mouse M-lysozyme downstream enhancer inhibits heterotetrameric GABP binding | Q40396896 | ||
| Basal level transcription of the histone H1(0) gene is mediated by a 80 bp promoter fragment | Q40405458 | ||
| A structural analysis of the bent kinetoplast DNA from Crithidia fasciculata by high resolution chemical probing | Q40408423 | ||
| Uranyl mediated photofootprinting reveals strong E. coli RNA polymerase--DNA backbone contacts in the +10 region of the DeoP1 promoter open complex. | Q40451078 | ||
| Pyrimidine-specific chemical reactions useful for DNA sequencing. | Q40483018 | ||
| Rapid procedure for chemical sequencing of small oligonucleotides without ethanol precipitation | Q40513999 | ||
| A simplified method for in vivo footprinting using DMS. | Q40524272 | ||
| The enhancer factor R of Epstein-Barr virus (EBV) is a sequence-specific DNA binding protein. | Q40526858 | ||
| An improvement in thymine specific chemical DNA sequencing | Q40537690 | ||
| Diethylpyrocarbonate and permanganate provide evidence for an unusual DNA conformation induced by binding of the antitumour antibiotics bleomycin and phleomycin | Q40553354 | ||
| Diethyl pyrocarbonate: a chemical probe for DNA cruciforms | Q40561739 | ||
| Highly selective chemical modification of cruciform loops by diethyl pyrocarbonate | Q40561745 | ||
| Improved in vivo dimethyl sulfate footprinting using AlkA protein: DNA-protein interactions at the mouse H19 gene promoter in primary embryo fibroblasts. | Q41752909 | ||
| Detection of intercalation-induced changes in DNA structure by reaction with diethyl pyrocarbonate or potassium permanganate Evidence against the induction of Hoogsteen base pairing by echinomycin | Q42213716 | ||
| Structure-specific binding of the two tandem HMG boxes of HMG1 to four-way junction DNA is mediated by the A domain. | Q42616061 | ||
| Allosteric underwinding of DNA is a critical step in positive control of transcription by Hg-MerR | Q42617709 | ||
| In vivo studies on the interaction of RNA polymerase-sigma 54 with the Klebsiella pneumoniae and Rhizobium meliloti nifH promoters. The role of NifA in the formation of an open promoter complex | Q42645258 | ||
| The effect of DNA sequence, ionic strength, and cationic DNA affinity binders on the methylation of DNA by N-methyl-N-nitrosourea | Q43452094 | ||
| Mapping adducts of DNA structural probes using transcription and primer extension approaches | Q44829852 | ||
| Chemical footprinting of the interaction between left-handed Z-DNA and anti-Z-DNA antibodies by diethylpyrocarbonate carbethoxylation | Q44957893 | ||
| Hydroxylamine and methoxylamine as probes of DNA structure | Q45751828 | ||
| The role of a pentanucleotide repeat sequence, AGGGAAGGGA, in the regulation of JC virus DNA replication | Q45782414 | ||
| Transition metal complexes as probes of nucleic acids | Q45941523 | ||
| Base modifications in plasmid DNA caused by potassium permanganate | Q46203848 | ||
| 18 DNA contacts probed by modification protection and interference studies | Q46516796 | ||
| DNA supercoiling promotes formation of a bent repression loop in lac DNA. | Q46949013 | ||
| Effect of hemimethylation and methylation of adenine on the structure and stability of model DNA duplexes. | Q53998530 | ||
| Chemical probes of DNA conformation: detection of Z-DNA at nucleotide resolution. | Q54065890 | ||
| Analysis of a curved DNA constructed from alternating dAn:dTn-tracts in linear and supercoiled form by high resolution chemical probing. | Q54128593 | ||
| Stabilization of Z DNA in vivo by localized supercoiling. | Q54342678 | ||
| The MerR heavy metal receptor mediates positive activation in a topologically novel transcription complex. | Q54361808 | ||
| Probing of DNA structure in cells with osmium tetroxide-2,2'-bipyridine. | Q54685592 | ||
| High-resolution analysis of lac transcription complexes inside cells. | Q54775597 | ||
| Structure, Recognition, and Processing of Cisplatin-DNA Adducts. | Q55035583 | ||
| Influence of DNA Sequence and Methylation Status on Bisulfite Conversion of Cytosine Residues | Q57675186 | ||
| The crystal structure of the DNA-binding domain of yeast RAP1 in complex with telomeric DNA | Q27732682 | ||
| The 2.2 A structure of a permanganate-sensitive DNA site bound by the Epstein-Barr virus origin binding protein, EBNA1 | Q27766425 | ||
| 57 Sequencing end-labeled DNA with base-specific chemical cleavages | Q27860479 | ||
| Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis | Q28297567 | ||
| Monovalent cation-induced structure of telomeric DNA: the G-quartet model | Q30459609 | ||
| Site-specific intercalation at the triplex-duplex junction induces a conformational change which is detectable by hypersensitivity to diethylpyrocarbonate | Q33360828 | ||
| Reactivity of cytosine and thymine in single-base-pair mismatches with hydroxylamine and osmium tetroxide and its application to the study of mutations | Q33582011 | ||
| A simple high-resolution procedure to study DNA methylation and in vivo DNA-protein interactions on a single-copy gene level in higher eukaryotes | Q33849809 | ||
| Chemical probes for higher-order structure in RNA | Q34054857 | ||
| Missing contact probing of DNA-protein interactions | Q34348475 | ||
| Peptide nucleic acid-anthraquinone conjugates: strand invasion and photoinduced cleavage of duplex DNA | Q34643768 | ||
| Substrate recognition by Escherichia coli MutY using substrate analogs | Q34706439 | ||
| Efficient pH-independent sequence-specific DNA binding by pseudoisocytosine-containing bis-PNA. | Q34734918 | ||
| Recognition of specific nucleotide bases and cooperative DNA binding by the trans-acting nitrogen regulatory protein NIT2 of Neurospora crassa | Q34998584 | ||
| Uracil interference, a rapid and general method for defining protein-DNA interactions involving the 5-methyl group of thymines: the GCN4-DNA complex | Q35060086 | ||
| Chemical reactivity of matched cytosine and thymine bases near mismatched and unmatched bases in a heteroduplex between DNA strands with multiple differences | Q35229929 | ||
| Crystallization of DNA | Q35402027 | ||
| Thymine glycols and urea residues in M13 DNA constitute replicative blocks in vitro. | Q35564216 | ||
| Nucleotide sequence of the 3′ half of AKV | Q35719644 | ||
| Detection of an unusual distortion in A-tract DNA using KMnO4: effect of temperature and distamycin on the altered conformation | Q35768660 | ||
| In vivo genomic footprinting analysis reveals that the complex Bradyrhizobium japonicum fixRnifA promoter region is differently occupied by two distinct RNA polymerase holoenzymes | Q35783458 | ||
| Potassium permanganate as ain situprobe for B-Z and Z-Z junctions | Q35801271 | ||
| Detection of single base mismatches of thymine and cytosine residues by potassium permanganate and hydroxylamine in the presence of tetralkylammonium salts | Q35891306 | ||
| Modifications of guanine bases during oligonucleotide synthesis | Q36005628 | ||
| Direct chemical method for sequencing RNA | Q37327190 | ||
| Submillimolar levels of calcium regulates DNA structure at the dinucleotide repeat (TG/AC)n | Q37375393 | ||
| Diethyl pyrocarbonate: a chemical probe for secondary structure in negatively supercoiled DNA. | Q37556504 | ||
| Chemical and photochemical probing of DNA complexes | Q37932035 | ||
| Probing the structure of RNAs in solution | Q38181797 | ||
| Conformational analysis of site-specific DNA cross-links of cisplatin-distamycin conjugates | Q38307686 | ||
| Binding of EcoP15I DNA methyltransferase to DNA reveals a large structural distortion within the recognition sequence | Q38312746 | ||
| P304 | page(s) | Unit 6.6 | |
| P577 | publication date | 2001-08-01 | |
| P1433 | published in | Current protocols in nucleic acid chemistry / editorial board, Serge L. Beaucage ... [et al.] | Q26867044 |
| P1476 | title | Chemical reagents for investigating the major groove of DNA. | |
| P478 | volume | Chapter 6 |
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