Genome-wide analysis suggests high level of microsynteny and purifying selection affect the evolution of EIN3/EIL family in Rosaceae.

scientific article published on 31 May 2017

Genome-wide analysis suggests high level of microsynteny and purifying selection affect the evolution of EIN3/EIL family in Rosaceae. is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.7717/PEERJ.3400
P932PMC publication ID5455322
P698PubMed publication ID28584725

P50authorYunpeng CaoQ61794144
P2093author name stringYi Lin
Qing Jin
Yongping Cai
Dandan Meng
Dahui Li
Yahui Han
P2860cites workThe genome of woodland strawberry (Fragaria vesca)Q22122058
The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolutionQ22122077
Genome evolution in polyploidsQ22122457
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis toolsQ24248165
Cloning of a cDNA encoding EIN3-like protein (DC-EIL1) and decrease in its mRNA level during senescence in carnation flower tissuesQ42646501
Involvement of two rice ETHYLENE INSENSITIVE3-LIKE genes in wound signaling.Q43268213
Evolution and microsynteny of the apyrase gene family in three legume genomesQ44642396
Activation of the ethylene gas response pathway in Arabidopsis by the nuclear protein ETHYLENE-INSENSITIVE3 and related proteinsQ48048379
Characterization of a novel tomato EIN3-like gene (LeEIL4).Q48219864
Expression analysis of five tobacco EIN3 family members in relation to tissue-specific ethylene responses.Q48233051
Members of the tomato LeEIL (EIN3-like) gene family are functionally redundant and regulate ethylene responses throughout plant developmentQ48364267
Genome Size Diversity and Evolution in Land PlantsQ57067590
OsEIL1, a rice homolog of the Arabidopsis EIN3 regulates the ethylene response as a positive componentQ79756484
Expansion of banana (Musa acuminata) gene families involved in ethylene biosynthesis and signalling after lineage-specific whole-genome duplicationsQ87644602
Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genesQ24563620
The Pfam protein families databaseQ24619716
SMART 7: recent updates to the protein domain annotation resourceQ24622634
Pfam: clans, web tools and servicesQ25257103
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony MethodsQ27860929
The evolutionary fate and consequences of duplicate genesQ27861065
DnaSP v5: a software for comprehensive analysis of DNA polymorphism dataQ28131837
Genome duplication and gene loss affect the evolution of heat shock transcription factor genes in legumesQ28655486
The genome of the pear (Pyrus bretschneideri Rehd.).Q28709284
Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction eventQ28754782
InterProScan--an integration platform for the signature-recognition methods in InterProQ29547336
The genome of Prunus mumeQ30459409
Comparative genomic analysis of the WRKY III gene family in populus, grape, arabidopsis and riceQ30664052
Molecular and biochemical characterization of VR-EILs encoding mung bean ETHYLENE INSENSITIVE3-LIKE proteinsQ30962332
Evolution of Rosaceae Fruit Types Based on Nuclear Phylogeny in the Context of Geological Times and Genome DuplicationQ33590746
Cloning and DNA-binding properties of a tobacco Ethylene-Insensitive3 (EIN3) homologQ33614549
The ethylene-response pathway: signal perception to gene regulationQ33745401
Comparative analysis of rosaceous genomes and the reconstruction of a putative ancestral genome for the family.Q33791258
Three multigene families in Plasmodium parasites: facts and questionsQ34914285
Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomesQ35052103
GSDS 2.0: an upgraded gene feature visualization serverQ35367182
Species-specific duplications driving the recent expansion of NBS-LRR genes in five Rosaceae species.Q35574913
The ethylene signaling pathway: new insightsQ35633203
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearityQ35888863
Genome-Wide Identification, Characterization and Expression Analysis of the Chalcone Synthase Family in MaizeQ36666954
MYB Transcription Factors in Chinese Pear (Pyrus bretschneideri Rehd.): Genome-Wide Identification, Classification, and Expression Profiling during Fruit DevelopmentQ36851537
Systematic Analysis of the 4-Coumarate:Coenzyme A Ligase (4CL) Related Genes and Expression Profiling during Fruit Development in the Chinese PearQ37373639
Structural, Evolutionary, and Functional Analysis of the Class III Peroxidase Gene Family in Chinese Pear (Pyrus bretschneideri).Q37486755
Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transpositionQ37539972
Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).Q38785396
High level of microsynteny and purifying selection affect the evolution of WRKY family in GramineaeQ38922091
Phylogenomic reconstruction of lactic acid bacteria: an updateQ42106532
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P921main subjectRosaceaeQ46299
P304page(s)e3400
P577publication date2017-05-31
P1433published inPeerJQ2000010
P1476titleGenome-wide analysis suggests high level of microsynteny and purifying selection affect the evolution of EIN3/EIL family in Rosaceae
P478volume5

Reverse relations

cites work (P2860)
Q52565977Genome Wide Identification, Evolutionary, and Expression Analysis of VQ Genes from Two Pyrus Species.
Q55276969Genome-Wide Analysis Characterization and Evolution of SBP Genes in Fragaria vesca, Pyrus bretschneideri, Prunus persica and Prunus mume.
Q64064372Genome-wide identification and analysis of the EIN3/EIL gene family in allotetraploid Brassica napus reveal its potential advantages during polyploidization
Q92854485Investigation of the EIL/EIN3 Transcription Factor Gene Family Members and Their Expression Levels in the Early Stage of Cotton Fiber Development
Q64115468Metacaspase gene family in Rosaceae genomes: Comparative genomic analysis and their expression during pear pollen tube and fruit development
Q64118752The transcription factor family in soybean: Genome-wide identification, expression profiling and genetic diversity analysis

Search more.