IMHOTEP-a composite score integrating popular tools for predicting the functional consequences of non-synonymous sequence variants

scientific article published on February 2017

IMHOTEP-a composite score integrating popular tools for predicting the functional consequences of non-synonymous sequence variants is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1093/NAR/GKW886
P932PMC publication ID5388428
P698PubMed publication ID28180317

P50authorMichael KrawczakQ60985300
Matthew MortQ110142175
David N. CooperQ30503192
P2093author name stringAmke Caliebe
Carolin Knecht
Olaf Junge
P2860cites workPredicting the functional consequences of non-synonymous DNA sequence variants--evaluation of bioinformatics tools and development of a consensus strategy.Q50855218
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Predicting the effects of amino acid substitutions on protein functionQ28250660
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Using bioinformatics to predict the functional impact of SNVsQ28744088
Comparison of the predicted and observed secondary structure of T4 phage lysozymeQ29398301
ANNOVAR: functional annotation of genetic variants from high-throughput sequencing dataQ29547161
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The Human Gene Mutation Database: building a comprehensive mutation repository for clinical and molecular genetics, diagnostic testing and personalized genomic medicineQ34374148
Improving the assessment of the outcome of nonsynonymous SNVs with a consensus deleteriousness score, Condel.Q34768428
Functional annotations improve the predictive score of human disease-related mutations in proteinsQ34985914
Comparison and integration of deleteriousness prediction methods for nonsynonymous SNVs in whole exome sequencing studiesQ35221430
Predicting the functional impact of protein mutations: application to cancer genomicsQ35224321
dbNSFP v3.0: A One-Stop Database of Functional Predictions and Annotations for Human Nonsynonymous and Splice-Site SNVsQ36576476
Lost in the space of bioinformatic tools: a constantly updated survival guide for genetic epidemiology. The GenEpi ToolboxQ37645064
Molecular genetic epidemiology of human diseases: from patterns to predictionsQ38163379
PON-P: integrated predictor for pathogenicity of missense variantsQ39364474
The evaluation of tools used to predict the impact of missense variants is hindered by two types of circularityQ39951063
dbNSFP: a lightweight database of human nonsynonymous SNPs and their functional predictionsQ42059080
A combined functional annotation score for non-synonymous variantsQ42227205
Predicting the functional, molecular, and phenotypic consequences of amino acid substitutions using hidden Markov modelsQ42288039
P275copyright licenseCreative Commons Attribution-NonCommercial 4.0 InternationalQ34179348
P6216copyright statuscopyrightedQ50423863
P433issue3
P304page(s)e13
P577publication date2017-02-01
P1433published inNucleic Acids ResearchQ135122
P1476titleIMHOTEP-a composite score integrating popular tools for predicting the functional consequences of non-synonymous sequence variants
P478volume45

Reverse relations

cites work (P2860)
Q58106112CADD: predicting the deleteriousness of variants throughout the human genome
Q57170230Computational resources associating diseases with genotypes, phenotypes and exposures
Q41472888Genetic Code Optimization for Cotranslational Protein Folding: Codon Directional Asymmetry Correlates with Antiparallel Betasheets, tRNA Synthetase Classes
Q49489514IW-Scoring: an Integrative Weighted Scoring framework for annotating and prioritizing genetic variations in the noncoding genome
Q55644927Prioritization of Variants Detected by Next Generation Sequencing According to the Mutation Tolerance and Mutational Architecture of the Corresponding Genes.
Q36324942The Human Gene Mutation Database: towards a comprehensive repository of inherited mutation data for medical research, genetic diagnosis and next-generation sequencing studies

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