CNA web server: rigidity theory-based thermal unfolding simulations of proteins for linking structure, (thermo-)stability, and function. (scientific article published on 22 April 2013)

Constraint Network Analysis (CNA): a Python software package for efficiently linking biomacromolecular structure, flexibility, (thermo-)stability, and function

Q30428559

Temperature, stability, and the hydrophobic interaction

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Fluorescence spectroscopy of single biomolecules.

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The role of dynamics in enzyme activity

Q33185384

Pybel: a Python wrapper for the OpenBabel cheminformatics toolkit

Q33323081

Protein unfolding: rigidity lost

Q34018951

Protein dynamics from NMR.

Q34019517

Molecular dynamics simulations of biomolecules

Q34799927

KINARI-Web: a server for protein rigidity analysis

Q35075724

Engineering an enzyme to resist boiling

Q35901528

Adjustment of conformational flexibility is a key event in the thermal adaptation of proteins

Q36489561

Target flexibility: an emerging consideration in drug discovery and design

Q37240137

Global and local indices for characterizing biomolecular flexibility and rigidity

Q39547820

Analysis of structural determinants of the stability of thermolysin-like proteases by molecular modelling and site-directed mutagenesis

Q40918445

Automated design of the surface positions of protein helices

Q42845935

Thermostabilizing mutations preferentially occur at structural weak spots with a high mutation ratio

Q43014568

A new way of enhancing the thermostability of proteases

Q43019148

Protein rigidity and thermophilic adaptation

Q43030167

Protein flexibility predictions using graph theory

Q43629667

Change in protein flexibility upon complex formation: analysis of Ras-Raf using molecular dynamics and a molecular framework approach.

Q45934507

P275

Creative Commons Attribution-NonCommercial 3.0 Unported

copyrighted

issue

Web Server issue

P407

language of work or name

English

Q1860

P921

main subject

web server

Q11288

P304

page(s)

W340-8

P577

publication date

2013-04-22

P1433

published in

Nucleic Acids Research

Q135122

P1476

title

CNA web server: rigidity theory-based thermal unfolding simulations of proteins for linking structure, (thermo-)stability, and function

P478

volume

Reverse relations

cites work (P2860)

Q48309147	1H, 13C and 15N NMR chemical shift assignments of A. thaliana RCD1 RST.
Q35522515	A virtual pebble game to ensemble average graph rigidity.
Q35966175	Application of Rigidity Theory to the Thermostabilization of Lipase A from Bacillus subtilis
Q47265199	Atomistic simulations and network-based modeling of the Hsp90-Cdc37 chaperone binding with Cdk4 client protein: A mechanism of chaperoning kinase clients by exploiting weak spots of intrinsically dynamic kinase domains
Q47707372	B genome specific polymorphism in the TdDRF1 gene is in relationship with grain yield
Q38912971	Bovine papillomavirus type 7 in Italy: complete genomes and sequence variants
Q50067400	Building Atomic Models of the Ion Channels Based on Low Resolution Electron Microscopy Maps and Homology Modeling.
Q36094538	Cell-free Determination of Binary Complexes That Comprise Extended Protein-Protein Interaction Networks of Yersinia pestis.
Q41872322	Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions.
Q64099953	Disulfide Bond Engineering of an Endoglucanase from to Improve Its Thermostability
Q45335193	Ensemble-based modeling and rigidity decomposition of allosteric interaction networks and communication pathways in cyclin-dependent kinases: Differentiating kinase clients of the Hsp90-Cdc37 chaperone
Q51228224	Family-wide characterization of matrix metalloproteinases from Arabidopsis thaliana reveals their distinct proteolytic activity and cleavage site specificity.
Q50876547	Genome-wide identification, in silico characterization and expression analysis of ZIP-like genes from Trichomonas vaginalis in response to Zinc and Iron.
Q51241419	H255Y and K508R missense mutations in tumour suppressor folliculin (FLCN) promote kidney cell proliferation.
Q44226226	Identification of a binding element for the cytoplasmic regulator FROUNT in the membrane-proximal C-terminal region of chemokine receptors CCR2 and CCR5.
Q64971074	Integration of Random Forest Classifiers and Deep Convolutional Neural Networks for Classification and Biomolecular Modeling of Cancer Driver Mutations.
Q39613786	Molecular Cloning, Expression Analysis, and Functional Characterization of the H(+)-Pyrophosphatase from Jatropha curcas
Q50457965	Molecular characterization of chicken class II transactivator gene.
Q51760180	Molecular modeling and in silico characterization of GmABCC5: a phytate transporter and potential target for low-phytate crops.
Q28080542	My 65 years in protein chemistry
Q47779695	Network-based modelling and percolation analysis of conformational dynamics and activation in the CDK2 and CDK4 proteins: dynamic and energetic polarization of the kinase lobes may determine divergence of the regulatory mechanisms
Q30384558	Prediction of Phenotypic Effects of Variants Observed in LOC_Os04g36720 of FRO1 Gene in Rice (Oryza sativa L.).
Q36414440	Requirement of novel amino acid fragments of orphan nuclear receptor TR3/Nur77 for its functions in angiogenesis
Q28830340	Residue Geometry Networks: A Rigidity-Based Approach to the Amino Acid Network and Evolutionary Rate Analysis
Q54516010	Role of Cys73 in the thermostability of farnesyl diphosphate synthase from Geobacillus stearothermophilus.
Q27304404	Structural Rigidity and Protein Thermostability in Variants of Lipase A from Bacillus subtilis
Q35748676	The Interaction of FABP with Kapα.
Q40167601	The linker region of breast cancer resistance protein ABCG2 is critical for coupling of ATP-dependent drug transport.
Q53479853	Transcriptome-wide analysis of WRKY transcription factors in wheat and their leaf rust responsive expression profiling.
Q41955359	Vibrational entropy differences between mesophile and thermophile proteins and their use in protein engineering

P8978	DBLP publication ID	journals/nar/KrugerRPG13
P356	DOI	10.1093/NAR/GKT292
P932	PMC publication ID	3692064
P698	PubMed publication ID	23609541
P5875	ResearchGate publication ID	236266591