Application of clinical proteomics in acute respiratory distress syndrome

scientific article published on 15 October 2014

Application of clinical proteomics in acute respiratory distress syndrome is …
instance of (P31):
scholarly articleQ13442814

External links are
P6179Dimensions Publication ID1032389870
P356DOI10.1186/S40169-014-0034-1
P932PMC publication ID4883989
P698PubMed publication ID26932378
P5875ResearchGate publication ID280771342

P2093author name stringLeeAnn Higgins
Christine H Wendt
David H Ingbar
Maneesh Bhargava
P2860cites workProteome profiling for the identification of lung cancer signaturesQ82525760
High resolution two-dimensional electrophoresis of human plasma proteinsQ24561458
High resolution two-dimensional electrophoresis of proteinsQ24608190
Shotgun MS proteomic analysis of bronchoalveolar lavage fluid in normal subjectsQ26823064
Mass Spectrometric Sequencing of Proteins from Silver-Stained Polyacrylamide GelsQ27860531
Probability-based protein identification by searching sequence databases using mass spectrometry dataQ27860736
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein databaseQ27861106
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomicsQ28131742
Large-scale analysis of the yeast proteome by multidimensional protein identification technologyQ28131778
Correlation between protein and mRNA abundance in yeastQ28137554
Human bronchoalveolar lavage fluid: two-dimensional gel electrophoresis, amino acid microsequencing and identification of major proteinsQ28140665
Human bronchoalveolar lavage fluid protein two-dimensional database: study of interstitial lung diseasesQ28144123
Quantitative analysis of complex protein mixtures using isotope-coded affinity tagsQ28145324
Proteinchip(R) surface enhanced laser desorption/ionization (SELDI) mass spectrometry: a novel protein biochip technology for detection of prostate cancer biomarkers in complex protein mixturesQ28218810
Extending top-down mass spectrometry to proteins with masses greater than 200 kilodaltonsQ28267169
Mass spectrometry in cancer biomarker research: a case for immunodepletion of abundant blood-derived proteins from clinical tissue specimensQ28307595
Unlocking biomarker discovery: large scale application of aptamer proteomic technology for early detection of lung cancerQ28744369
Isotope dilution--mass spectrometric quantification of specific proteins: model application with apolipoprotein A-IQ64134355
Two-dimensional electrophoresis of dog bronchoalveolar lavage fluid proteinsQ68903417
Detection and identification of human bronchoalveolar lavage proteins using narrow-range immobilized pH gradient DryStrip and the paper bridge sample application methodQ74094920
Mass spectrometric characterization of human histone H3: a bird's eye viewQ82466148
Protein and polymer analyses up tom/z 100 000 by laser ionization time-of-flight mass spectrometryQ29030232
A model for random sampling and estimation of relative protein abundance in shotgun proteomicsQ29547316
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagentsQ29547450
Acute respiratory distress syndrome: the Berlin DefinitionQ29615138
Incidence and outcomes of acute lung injuryQ29615139
Universal sample preparation method for proteome analysisQ29615662
The American-European Consensus Conference on ARDS. Definitions, mechanisms, relevant outcomes, and clinical trial coordinationQ29617876
Electrospray ionization for mass spectrometry of large biomoleculesQ29618001
Potential biomarkers of an exaggerated response to endotoxemia.Q30361254
Mining the acute respiratory distress syndrome proteome: identification of the insulin-like growth factor (IGF)/IGF-binding protein-3 pathway in acute lung injuryQ30478475
Proteomic and computational analysis of bronchoalveolar proteins during the course of the acute respiratory distress syndromeQ30483815
Quantification of C-reactive protein in the serum of patients with rheumatoid arthritis using multiple reaction monitoring mass spectrometry and 13C-labeled peptide standardsQ30759842
Presence of cytokeratins in exhaled breath condensate of mechanical ventilated patientsQ30837597
Bronchoalveolar lavage fluid protein composition in patients with sarcoidosis and idiopathic pulmonary fibrosis: a two-dimensional electrophoretic studyQ30861641
The dynamic range of protein expression: a challenge for proteomic researchQ30864099
Interpretation of shotgun proteomic data: the protein inference problemQ30993883
Proteomic analysis of pulmonary edema fluid and plasma in patients with acute lung injury.Q33197095
Analysis of chronic lung transplant rejection by MALDI-TOF profiles of bronchoalveolar lavage fluidQ33231141
Comparative proteomic study of acute pulmonary embolism in a rat modelQ33289015
LC-MALDI MS and MS/MS--an efficient tool in proteome analysis.Q33303441
Sputum proteomics in inflammatory and suppurative respiratory diseasesQ33345110
Proteomic parsimony through bipartite graph analysis improves accuracy and transparencyQ33607604
Preparation of proteins and peptides for mass spectrometry analysis in a bottom-up proteomics workflowQ34002643
The Berlin definition of ARDS: an expanded rationale, justification, and supplementary materialQ34033351
Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysisQ34133645
Proteomic profiles in acute respiratory distress syndrome differentiates survivors from non-survivorsQ34302302
Analytical properties of the nanoelectrospray ion sourceQ34394381
Sequence database searches via de novo peptide sequencing by tandem mass spectrometryQ34430804
Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigationsQ34445192
Mass spectrometry and the age of the proteomeQ34454564
Protein identification in the post-genome era: the rapid rise of proteomicsQ34472693
Of mice and men: comparative proteomics of bronchoalveolar fluid.Q34626421
Database of bronchoalveolar lavage fluid proteinsQ34642424
Relative quantification of proteins in human cerebrospinal fluids by MS/MS using 6-plex isobaric tagsQ34756963
Protein expression profile of rat type two alveolar epithelial cells during hyperoxic stress and recoveryQ34981165
Reversed-phase chromatography with multiple fraction concatenation strategy for proteome profiling of human MCF10A cellsQ35059737
Liquid chromatography-mass spectrometry-based quantitative proteomics.Q35111036
Proteomics: current techniques and potential applications to lung diseaseQ35798681
High-pH reversed-phase chromatography with fraction concatenation for 2D proteomic analysisQ35915734
Instant spectral assignment for advanced decision tree-driven mass spectrometryQ36001400
Proteomics of bronchoalveolar lavage fluidQ36010680
Polyvinylidene difluoride (PVDF): an interface for gel electrophoresis and matrix-assisted laser desorption/ionization mass spectrometryQ36726579
Challenges in translating plasma proteomics from bench to bedside: update from the NHLBI Clinical Proteomics Programs.Q36808058
The development of selected reaction monitoring methods for targeted proteomics via empirical refinement.Q36813369
Assessment of albumin removal from an immunoaffinity spin column: critical implications for proteomic examination of the albuminome and albumin-depleted samplesQ36931787
Assigning significance to peptides identified by tandem mass spectrometry using decoy databasesQ37027478
Quantitative proteomics analysis of human endothelial cell membrane rafts: evidence of MARCKS and MRP regulation in the sphingosine 1-phosphate-induced barrier enhancementQ37196996
Current affairs in quantitative targeted proteomics: multiple reaction monitoring-mass spectrometryQ37293078
Proteomics of lung physiopathologyQ37313206
The pathogenetic and prognostic value of biologic markers in acute lung injuryQ37413838
Proteomic analysis in interstitial lung diseases: a reviewQ37547977
Lung cancer proteomics, clinical and technological considerationsQ37777800
Top-down proteomic analysis by MALDI-TOF profiling: Concentration-independent biomarkersQ37817181
The spectra count label-free quantitation in cancer proteomics.Q38010686
Storage of human biospecimens: selection of the optimal storage temperature.Q38219478
Quantitative proteomic analysis by iTRAQ for identification of candidate biomarkers in plasma from acute respiratory distress syndrome patientsQ38485692
False discovery rates of protein identifications: a strike against the two-peptide ruleQ39208876
Development of selected reaction monitoring‐MS methodology to measure peptide biomarkers in prostate cancerQ39658772
Pulmonary alveolar proteinosis: analysis of airway and alveolar proteinsQ39668896
Proteomic analysis of undiluted lung epithelial lining fluidQ40062731
Eight-channel iTRAQ enables comparison of the activity of six leukemogenic tyrosine kinasesQ40064488
Shotgun proteomic analysis of human-induced sputumQ40310046
Whole gel processing procedure for GeLC-MS/MS based proteomicsQ40791158
Sample collection, processing and storageQ41630954
On the estimation of false positives in peptide identifications using decoy search strategyQ41994124
Development and evaluation of a reference measurement procedure for the determination of total 3,3',5-triiodothyronine in human serum using isotope-dilution liquid chromatography-tandem mass spectrometryQ45063169
Sample handling for mass spectrometric proteomic investigations of human sera.Q45966328
Quantitative profiling of proteins in complex mixtures using liquid chromatography and mass spectrometry.Q45997049
The ALIEN study: incidence and outcome of acute respiratory distress syndrome in the era of lung protective ventilationQ46440662
Similarity among tandem mass spectra from proteomic experiments: detection, significance, and utilityQ46717073
Proteomic analysis of inflammatory biomarkers in bronchoalveolar lavage.Q51585412
Human bronchoalveolar lavage: biofluid analysis with special emphasis on sample preparation.Q51665498
Protein pattern of exhaled breath condensate and saliva.Q51711043
Deep proteome profiling of sera from never-smoked lung cancer patients.Q51904653
Potential biomarkers for diagnosis of sarcoidosis using proteomics in serum.Q51916873
Two-dimensional gel electrophoresis of nasal and bronchoalveolar lavage fluids after occupational exposure.Q52338044
A clean, more efficient method for in-solution digestion of protein mixtures without detergent or urea.Q53585544
P433issue1
P921main subjectacute respiratory distress syndromeQ344873
P304page(s)34
P577publication date2014-10-15
P1433published inClinical and translational medicineQ27724586
P1476titleApplication of clinical proteomics in acute respiratory distress syndrome
P478volume3

Reverse relations

cites work (P2860)
Q58078019BAL Fluid Metaproteome in Acute Respiratory Failure
Q38687877Critical roles of mucin-1 in sensitivity of lung cancer cells to tumor necrosis factor-alpha and dexamethasone

Search more.