Conformational analysis of a dermatan sulfate-derived tetrasaccharide by NMR, molecular modeling, and residual dipolar couplings

scientific article published on January 2008

Conformational analysis of a dermatan sulfate-derived tetrasaccharide by NMR, molecular modeling, and residual dipolar couplings is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1002/CBIC.200700400
P932PMC publication ID4135520
P698PubMed publication ID18072186
P5875ResearchGate publication ID5776570

P50authorJesús Jiménez-BarberoQ6188504
Robert J. LinhardtQ7345927
Alba SilipoQ56517339
Antonio MolinaroQ42796646
P2093author name stringZhenqing Zhang
F Javier Cañada
P2860cites workNMR solution conformation of heparin-derived tetrasaccharideQ42983336
Limited flexibility of lactose detected from residual dipolar couplings using molecular dynamics simulations and steric alignment methodsQ45310156
Tracking alignment from the moment of inertia tensor (TRAMITE) of biomolecules in neutral dilute liquid crystal solutionsQ49021992
Role of glycosaminoglycans in cellular communication.Q51645129
Synthesis and conformational analysis of an α-d-mannopyranosyl-(1→2)-α-d-mannopyranosyl-(1→6)-α-d-mannopyranose mimicQ60546368
The use of the AMBER force field in conformational analysis of carbohydrate molecules: determination of the solution conformation of methyl alpha-lactoside by NMR spectroscopy, assisted by molecular mechanics and dynamics calculationsQ72110204
The effect of variation of substitution on the solution conformation of heparin: a spectroscopic and molecular modelling studyQ72414841
Glycosaminoglycan conformation: do aqueous molecular dynamics simulations agree with x-ray fiber diffraction?Q73514942
N.m.r. and molecular-modelling studies of the solution conformation of heparinQ24528140
Biochemical characterization of the chondroitinase B active siteQ28204389
Conformer populations of L-iduronic acid residues in glycosaminoglycan sequencesQ28283247
Tunable alignment of macromolecules by filamentous phage yields dipolar coupling interactionsQ28290988
Improved spectral resolution in cosy 1H NMR spectra of proteins via double quantum filteringQ29618846
Conformational differences between O- and C-glycosides: the alpha-O-man-(1-->1)-beta-Gal/alpha-C-Man-(1-->1)-beta-Gal case--a decisive demonstration of the importance of the exo-anomeric effect on the conformation of glycosidesQ30593833
Structure of heparin-derived tetrasaccharide complexed to the plasma protein antithrombin derived from NOEs, J-couplings and chemical shiftsQ31271143
Filamentous bacteriophage for aligning RNA, DNA, and proteins for measurement of nuclear magnetic resonance dipolar coupling interactionsQ33928725
The molecular diversity of glycosaminoglycans shapes animal development.Q36521806
NMR solution conformation of heparin-derived hexasaccharideQ36889781
The pattern of distribution of amino groups modulates the structure and dynamics of natural aminoglycosides: implications for RNA recognition.Q38304761
Conformational studies on five octasaccharides isolated from chondroitin sulfate using NMR spectroscopy and molecular modelingQ38305303
Solution NMR structure of a human FGF-1 monomer, activated by a hexasaccharide heparin-analogue.Q38309317
Heparan sulfate-related oligosaccharides in ternary complex formation with fibroblast growth factors 1 and 2 and their receptorsQ38311931
Dynamic properties of biologically active synthetic heparin-like hexasaccharidesQ38324891
Second-generation mimics of ganglioside GM1 oligosaccharide: a three-dimensional view of their interactions with bacterial enterotoxins by NMR and computational methodsQ38358106
P433issue2
P304page(s)240-252
P577publication date2008-01-01
P1433published inChemBioChemQ634395
P1476titleConformational analysis of a dermatan sulfate-derived tetrasaccharide by NMR, molecular modeling, and residual dipolar couplings
P478volume9

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cites work (P2860)
Q34317336Fucosylated chondroitin sulfates from the body wall of the sea cucumber Holothuria forskali: conformation, selectin binding, and biological activity
Q41978020Proteoglycans and their heterogeneous glycosaminoglycans at the atomic scale
Q64903730Recommendations for the management of MPS VI: systematic evidence- and consensus-based guidance.
Q63291133Residual Dipolar Couplings (RDCs) in Organic Structure Determination
Q59480105Residual Dipolar Couplings for the Configurational and Conformational Analysis of Organic Molecules
Q42577323Residual dipolar coupling investigation of a heparin tetrasaccharide confirms the limited effect of flexibility of the iduronic acid on the molecular shape of heparin
Q59480108Residual dipolar couplings as a tool in determining the structure of organic molecules
Q37087052Solution structures of chemoenzymatically synthesized heparin and its precursors.
Q41037676Tailored chondroitin sulfate glycomimetics via a tunable multivalent scaffold for potentiating NGF/TrkA-induced neurogenesis
Q33690582Understanding Dermatan Sulfate-Heparin Cofactor II Interaction through Virtual Library Screening

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