Revealing gene transcription and translation initiation patterns in archaea, using an interactive clustering model

scientific article published on 19 May 2004

Revealing gene transcription and translation initiation patterns in archaea, using an interactive clustering model is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1007/S00792-004-0388-1
P698PubMed publication ID15150699
P5875ResearchGate publication ID8554972

P2093author name stringXiu-Feng Wan
Susan M Bridges
John A Boyle
P2860cites workGenome sequence of the hyperthermophilic crenarchaeon Pyrobaculum aerophilumQ22066214
Genome sequence of Halobacterium species NRC-1Q22066243
The complete genome of the crenarchaeon Sulfolobus solfataricus P2Q22066249
Operons in Escherichia coli: genomic analyses and predictionsQ22066322
Phylogenetic structure of the prokaryotic domain: The primary kingdomsQ24564821
Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequencesQ24630659
Activation of archaeal transcription by recruitment of the TATA-binding proteinQ24677869
Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs)Q24791695
High abundance of Archaea in Antarctic marine picoplanktonQ28239324
Initiation of translation in prokaryotes and eukaryotesQ29618237
RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12Q30977010
Snapshot of a large dynamic replicon in a halophilic archaeon: megaplasmid or minichromosome?Q31958293
Transcription initiation in Archaea: facts, factors and future aspectsQ33592579
Enrichment of regulatory signals in conserved non-coding genomic sequenceQ34098915
Correlations between Shine-Dalgarno sequences and gene features such as predicted expression levels and operon structuresQ34150909
Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequencesQ34538483
Measurements of the effects that coding for a protein has on a DNA sequence and their use for finding genesQ35535176
TrmB, a sugar-specific transcriptional regulator of the trehalose/maltose ABC transporter from the hyperthermophilic archaeon Thermococcus litoralisQ38361151
A Pyrococcus homolog of the leucine-responsive regulatory protein, LrpA, inhibits transcription by abrogating RNA polymerase recruitmentQ39530565
Analysis of consensus sequence patterns inGiardia cytoskeletongene promotersQ40395194
Identification and characterization ofE.coliribosomal binding sites by free energy computationQ40409594
The eubacterial transcriptional activator Lrp is present in the archaeon Pyrococcus furiosusQ40539099
Transcriptional regulation of an archaeal operon in vivo and in vitroQ42482342
Two different and highly organized mechanisms of translation initiation in the archaeon Sulfolobus solfataricusQ43027752
Conformational model for binding site recognition by the E.coli MetJ transcription factorQ43670843
Transcription in ArchaeaQ57179978
Normalized nucleotide frequencies allow the definition of archaeal promoter elements for different archaeal groups and reveal base-specific TFB contacts upstream of the TATA box.Q64886028
Computer analyses of complete genomes suggest that some archaebacteria employ both eukaryotic and eubacterial mechanisms in translation initiationQ73203518
Leaderless transcripts of the crenarchaeal hyperthermophile Pyrobaculum aerophilumQ73923151
A novel archaeal transcriptional regulator of heat shock responseQ78378152
P433issue4
P304page(s)291-299
P577publication date2004-05-19
P1433published inExtremophilesQ15766992
P1476titleRevealing gene transcription and translation initiation patterns in archaea, using an interactive clustering model
P478volume8

Reverse relations

cites work (P2860)
Q36978850Antigenic characterization of H3N2 influenza A viruses from Ohio agricultural fairs
Q41838953Global analysis of mRNA stability in the archaeon Sulfolobus

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