Improvement of phylum- and class-specific primers for real-time PCR quantification of bacterial taxa.

scientific article published on 17 June 2011

Improvement of phylum- and class-specific primers for real-time PCR quantification of bacterial taxa. is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1016/J.MIMET.2011.06.010
P698PubMed publication ID21704084
P5875ResearchGate publication ID51248718

P50authorAnthony S ClareQ39066641
Nick AldredQ56605965
P2093author name stringJ Grant Burgess
Tristano Bacchetti De Gregoris
P433issue3
P407language of work or nameEnglishQ1860
P304page(s)351-356
P577publication date2011-06-17
P1433published inJournal of Microbiological MethodsQ15757129
P1476titleImprovement of phylum- and class-specific primers for real-time PCR quantification of bacterial taxa
P478volume86

Reverse relations

cites work (P2860)
Q46539385Airway Microbiota Determines Innate Cell Inflammatory or Tissue Remodeling Profiles in Lung Transplantation
Q91928478Altered in Vitro Metabolomic Response of the Human Microbiota to Sweeteners
Q38856557Apoptosis, Dysbiosis and Expression of Inflammatory Cytokines are Sequential Events in the Development of 5-Fluorouracil-Induced Intestinal Mucositis in Mice
Q33716977Association between body mass index and Firmicutes/Bacteroidetes ratio in an adult Ukrainian population.
Q36116340Association of Bactericidal Dysfunction of Paneth Cells in Streptozocin-Induced Diabetic Mice with Insulin Deficiency
Q35763805Bacterial Communities and Midgut Microbiota Associated with Mosquito Populations from Waste Tires in East-Central Illinois
Q90408697Bacterial analysis in the early developmental stages of the black tiger shrimp (Penaeus monodon)
Q34663988Bacterial population in intestines of the black tiger shrimp (Penaeus monodon) under different growth stages
Q59799128Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential
Q34580360Changes in the gut microbiota of cloned and non-cloned control pigs during development of obesity: gut microbiota during development of obesity in cloned pigs
Q33621839Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life
Q114871227Commensal Clostridiales strains mediate effective anti-cancer immune response against solid tumors
Q90201377Commensal gut microbiota can modulate adaptive immune responses in chickens vaccinated with whole inactivated avian influenza virus subtype H9N2
Q36128884Comparative analyses of fecal microbiota in Tibetan and Chinese Han living at low or high altitude by barcoded 454 pyrosequencing
Q36129252Detailed comparison of bacterial communities during seasonal sludge bulking in a municipal wastewater treatment plant
Q43208608Development of a broad-range 23S rDNA real-time PCR assay for the detection and quantification of pathogenic bacteria in human whole blood and plasma specimens
Q45926493Development of a new loop-mediated isothermal amplification assay for prt (rfbS) gene to improve the identification of Salmonella serogroup D.
Q91971670Dietary Toll-Like Receptor Stimulants Promote Hepatic Inflammation and Impair Reverse Cholesterol Transport in Mice via Macrophage-Dependent Interleukin-1 Production
Q33736761Different Types of Dietary Fibers Trigger Specific Alterations in Composition and Predicted Functions of Colonic Bacterial Communities in BALB/c Mice
Q33824299Distinct patterns in the gut microbiota after surgical or medical therapy in obese patients
Q92188025Drivers and patterns of microbial community assembly in a Lyme disease vector
Q39296752Drought and host selection influence bacterial community dynamics in the grass root microbiome
Q37255990Dynamic In Vitro Models of the Human Gastrointestinal Tract as Relevant Tools to Assess the Survival of Probiotic Strains and Their Interactions with Gut Microbiota
Q92936215Early life microbiome perturbation alters pulmonary responses to ozone in male mice
Q46901697Ecological and enzymatic responses to petroleum contamination
Q36151592Employment of Near Full-Length Ribosome Gene TA-Cloning and Primer-Blast to Detect Multiple Species in a Natural Complex Microbial Community Using Species-Specific Primers Designed with Their Genome Sequences
Q35210647Endophytic bacterial community of grapevine leaves influenced by sampling date and phytoplasma infection process.
Q46180887Endothelial TLR4 and the microbiome drive cerebral cavernous malformations.
Q35017228Enrichment of Bifidobacterium longum subsp. infantis ATCC 15697 within the human gut microbiota using alginate-poly-L-lysine-alginate microencapsulation oral delivery system: an in vitro analysis using a computer-controlled dynamic human gastrointes
Q42119561Enterohemorrhagic Escherichia coli O157:H7 survival in an in vitro model of the human large intestine and interactions with probiotic yeasts and resident microbiota
Q35666705Enterohemorrhagic Escherichia coli infection has donor-dependent effect on human gut microbiota and may be antagonized by probiotic yeast during interaction with Peyer's patches
Q38938651Fermentation of bioactive solid lipid nanoparticles by human gut microflora.
Q34127269Fibre digestibility, abundance of faecal bacteria and plasma acetate concentrations in overweight adult mares.
Q34058454Flow cytometry and real-time quantitative PCR as tools for assessing plasmid persistence
Q92187244Food additives: Assessing the impact of exposure to permitted emulsifiers on bowel and metabolic health - introducing the FADiets study
Q92786380Fructose malabsorption induces cholecystokinin expression in the ileum and cecum by changing microbiota composition and metabolism
Q37243497Gammaproteobacteria as essential primary symbionts in the striped shield bug, Graphosoma Lineatum (Hemiptera: Pentatomidae).
Q37473958Gram-positive bacteria are held at a distance in the colon mucus by the lectin-like protein ZG16
Q61812454Gut Microbiota and Predicted Metabolic Pathways in a Sample of Mexican Women Affected by Obesity and Obesity Plus Metabolic Syndrome
Q38738880Gut microbiota composition in relation to the metabolic response to 12-week combined polyphenol supplementation in overweight men and women
Q104060948Gut microbiota is associated with protection against Marek's disease virus infection in chickens
Q90324085Gut microbiota regulates cardiac ischemic tolerance and aortic stiffness in obesity
Q92695616Habitat visualization, acquisition features and necessity of the gammaproteobacterial symbiont of pistachio stink Bug, Acrosternum heegeri (Hem.: Pentatomidae)
Q92376840High Relative Abundance of Lactobacillus reuteri and Fructose Intake are Associated with Adiposity and Cardiometabolic Risk Factors in Children from Mexico City
Q58129461Host diet mediates a negative relationship between abundance and diversity of gut microbiota
Q35952315Impact of probiotic supplements on microbiome diversity following antibiotic treatment of mice
Q35257520Improved group-specific primers based on the full SILVA 16S rRNA gene reference database
Q90308470In Situ Profiling of the Three Dominant Phyla Within the Human Gut Using TaqMan PCR for Pre-Hospital Diagnosis of Gut Dysbiosis
Q64284604In-hive variation of the gut microbial composition of honey bee larvae and pupae from the same oviposition time
Q47696493Influence of Darkness and Aging on Marine and Freshwater Biofilm Microbial Communities Using Microcosm Experiments
Q36623060Influence of whole-wheat consumption on fecal microbial community structure of obese diabetic mice.
Q36081679Intestinal Microbiota Promotes Psoriasis-Like Skin Inflammation by Enhancing Th17 Response
Q50949936Intestinal Proportion of Blautia sp. is Associated with Clinical Stage and Histoprognostic Grade in Patients with Early-Stage Breast Cancer.
Q42209211Intestinal epithelium-specific MyD88 signaling impacts host susceptibility to infectious colitis by promoting protective goblet cell and antimicrobial responses.
Q97554705Intestinal microbiota disruption limits the isoniazid mediated clearance of Mycobacterium tuberculosis in mice
Q34411223Introducing GUt low-density array (GULDA): a validated approach for qPCR-based intestinal microbial community analysis.
Q37520561Lactobacillus rhamnosus GG protects against non-alcoholic fatty liver disease in mice.
Q58780219Long-term effects of environmentally relevant concentrations of silver nanoparticles on major soil bacterial phyla of a loamy soil
Q30908955Long-term forest soil warming alters microbial communities in temperate forest soils
Q35165937Lung microbiota promotes tolerance to allergens in neonates via PD-L1.
Q39029431Microbial community dynamics in Inferno Crater Lake, a thermally fluctuating geothermal spring
Q91650450Microbial metabolite deoxycholic acid shapes microbiota against Campylobacter jejuni chicken colonization
Q40079514Microbiome balance in sputum determined by PCR stratifies COPD exacerbations and shows potential for selective use of antibiotics.
Q33746322Microencapsulated Bifidobacterium longum subsp. infantis ATCC 15697 favorably modulates gut microbiota and reduces circulating endotoxins in F344 rats
Q57031378Mitigating the impact of microbial pressure on great (Parus major) and blue (Cyanistes caeruleus) tit hatching success through maternal immune investment
Q46950723Molecules produced by probiotics prevent enteric colibacillosis in pigs
Q28548033Multi-Analytical Approach Reveals Potential Microbial Indicators in Soil for Sugarcane Model Systems
Q47116504New evidence showing that the destruction of gut bacteria by antibiotic treatment could increase the honey bee's vulnerability to Nosema infection.
Q40614537Novel antimicrobial peptide prevents C. rodentium infection in C57BL/6 mice by enhancing acid-induced pathogen killing.
Q59057148Olive Ridley Sea Turtle Hatching Success as a Function of Microbial Abundance and the Microenvironment ofIn SituNest Sand at Ostional, Costa Rica
Q35122928Olive ridley sea turtle hatching success as a function of the microbial abundance in nest sand at Ostional, Costa Rica
Q36553535Parasite-induced TH1 cells and intestinal dysbiosis cooperate in IFN-γ-dependent elimination of Paneth cells
Q42205587Persistence of antibiotic resistance plasmids in bacterial biofilms
Q90747718Polymorphic Immune Mechanisms Regulate Commensal Repertoire
Q47660112Precision editing of the gut microbiota ameliorates colitis
Q46564025Psychological stress exacerbates NSAID-induced small bowel injury by inducing changes in intestinal microbiota and permeability via glucocorticoid receptor signaling
Q89919987Pulse Crop Effects on Gut Microbial Populations, Intestinal Function, and Adiposity in a Mouse Model of Diet-Induced Obesity
Q92998227QseC Signaling in the Outbreak O104:H4 Escherichia coli Strain Combines Multiple Factors during Infection
Q54202084Quantification of bacterial and archaeal symbionts in high and low microbial abundance sponges using real-time PCR.
Q57166412Quantitative PCR Analysis of Gut Disease-Discriminatory Phyla for Determining Shrimp Disease Incidence
Q28601112Reduced Epithelial Na+/H+ Exchange Drives Gut Microbial Dysbiosis and Promotes Inflammatory Response in T Cell-Mediated Murine Colitis
Q37342051Reduced colonic microbial diversity is associated with colitis in NHE3-deficient mice
Q41693550Release of Antibiotic Resistant Bacteria by a Waste Treatment Plant from Romania
Q35183565Replicating the microbial community and water quality performance of full-scale slow sand filters in laboratory-scale filters.
Q42653478Resistin-like molecule β is a bactericidal protein that promotes spatial segregation of the microbiota and the colonic epithelium.
Q95280371Robust DNA protocols for tropical soils
Q34945452SIGIRR, a negative regulator of TLR/IL-1R signalling promotes Microbiota dependent resistance to colonization by enteric bacterial pathogens
Q35844226Seasonal Changes in Bacterial Communities Cause Foaming in a Wastewater Treatment Plant.
Q92126452Seasonal variation in gut microbiota composition: cross-sectional evidence from Ukrainian population
Q50194618Segment-specific responses of intestinal epithelium transcriptome to in-feed antibiotics in pigs
Q36018114Simple absolute quantification method correcting for quantitative PCR efficiency variations for microbial community samples
Q64056457Social-Stress-Responsive Microbiota Induces Stimulation of Self-Reactive Effector T Helper Cells
Q33673571Sourdough authentication: quantitative PCR to detect the lactic acid bacterial microbiota in breads
Q90250634Specific Commensal Bacterium Critically Regulates Gut Microbiota Osteoimmunomodulatory Actions During Normal Postpubertal Skeletal Growth and Maturation
Q40112489Streptococcus pneumoniae colonization is required to alter the nasal microbiota in cigarette smoke-exposed mice.
Q47709267Suppression of Gut Dysbiosis Reverses Western Diet-Induced Vascular Dysfunction
Q89899176THE MICROBIOTA CONTRIBUTES TO THE CONTROL OF HIGHLY PATHOGENIC H5N9 INFLUENZA VIRUS REPLICATION IN DUCKS
Q35283787Temporal analysis of the effect of extruded flaxseed on the swine gut microbiota
Q92397431The Honeybee Gut Microbiota Is Altered after Chronic Exposure to Different Families of Insecticides and Infection by Nosema ceranae
Q56880679The differential impact of a native and a non-native ragwort species (Senecioneae) on the first and second trophic level of the rhizosphere food web
Q34969305The effect of high-fat diet on the composition of the gut microbiota in cloned and non-cloned pigs of lean and obese phenotype
Q34722114The gut commensal Bacteroides thetaiotaomicron exacerbates enteric infection through modification of the metabolic landscape.
Q34709284The gut microbiota suppresses insulin-mediated fat accumulation via the short-chain fatty acid receptor GPR43.
Q34729837The human gut chip "HuGChip", an explorative phylogenetic microarray for determining gut microbiome diversity at family level
Q92910663The interleukin-33 receptor contributes to pulmonary responses to ozone in male mice: role of the microbiome
Q35871047The long-term effect of uranium and pH on the community composition of an artificial consortium
Q64073396The parasitic worm product ES-62 normalises the gut microbiota bone marrow axis in inflammatory arthritis
Q36884763Transcriptional Reprogramming and Resistance to Colonic Mucosal Injury in Poly(ADP-ribose) Polymerase 1 (PARP1)-deficient Mice
Q89475259Trypanosomatid parasite dynamically changes the transcriptome during infection and modifies honey bee physiology
Q37102177Unit Process Wetlands for Removal of Trace Organic Contaminants and Pathogens from Municipal Wastewater Effluents
Q35696028Use of 16S rRNA Gene-Targeted Group-Specific Primers for Real-Time PCR Analysis of Predominant Bacteria in Mouse Feces
Q43433195Validation of a new catalysed reporter deposition-fluorescence in situ hybridization probe for the accurate quantification of marine Bacteroidetes populations
Q35174779Variation in honey bee gut microbial diversity affected by ontogenetic stage, age and geographic location
Q41543377Vitamin D deficiency predisposes to adherent-invasive Escherichia coli-induced barrier dysfunction and experimental colonic injury
Q42218324Vitamin D deficiency promotes epithelial barrier dysfunction and intestinal inflammation.
Q91299308White Kidney Bean (Phaseolus Vulgaris L.) Consumption Reduces Fat Accumulation in a Polygenic Mouse Model of Obesity
Q89787491Xenosiderophore Utilization Promotes Bacteroides thetaiotaomicron Resilience during Colitis
Q33578966β-Klotho deficiency protects against obesity through a crosstalk between liver, microbiota, and brown adipose tissue.