Phylogenetic analysis of ADP-glucose pyrophosphorylase subunits reveals a role of subunit interfaces in the allosteric properties of the enzyme

scientific article published on 22 July 2009

Phylogenetic analysis of ADP-glucose pyrophosphorylase subunits reveals a role of subunit interfaces in the allosteric properties of the enzyme is …
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scholarly articleQ13442814

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P356DOI10.1104/PP.109.138933
P932PMC publication ID2735977
P698PubMed publication ID19625637
P5875ResearchGate publication ID26689086

P2093author name stringL Curtis Hannah
Janine R Shaw
Nikolaos Georgelis
P2860cites workAlternative mutations of a positively selected residue elicit gain or loss of functionalities in enzyme evolutionQ24309271
Purification and characterization of adenosine diphosphate glucose pyrophosphorylase from maize/potato mosaicsQ81840549
Mutagenesis of the glucose-1-phosphate-binding site of potato tuber ADP-glucose pyrophosphorylaseQ95434793
SWISS-MODEL: An automated protein homology-modeling serverQ24672647
Codon-substitution models for heterogeneous selection pressure at amino acid sitesQ27473194
The SWISS-MODEL workspace: a web-based environment for protein structure homology modellingQ27860637
UCSF Chimera--a visualization system for exploratory research and analysisQ27860666
MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignmentQ27860726
WHAT IF: a molecular modeling and drug design programQ27860734
PAML: a program package for phylogenetic analysis by maximum likelihoodQ27861096
Assessment of protein models with three-dimensional profilesQ28283805
Duplications and functional divergence of ADP-glucose pyrophosphorylase genes in plantsQ28757233
Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope geneQ29617599
DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein family.Q30330085
Crystal structure of potato tuber ADP-glucose pyrophosphorylaseQ33868406
Multiple high-throughput analyses monitor the response of E. coli to perturbationsQ34578020
Heterotachy and functional shift in protein evolutionQ35184657
Generation of up-regulated allosteric variants of potato ADP-glucose pyrophosphorylase by reversion geneticsQ36293757
Enhanced stability of maize endosperm ADP-glucose pyrophosphorylase is gained through mutants that alter subunit interactionsQ36654009
31P nuclear magnetic resonance studies of bioenergetics and glycolysis in anaerobic Escherichia coli cellsQ37585880
Mutagenesis of the potato ADPglucose pyrophosphorylase and characterization of an allosteric mutant defective in 3-phosphoglycerate activationQ37718963
Aspartate residue 142 is important for catalysis by ADP-glucose pyrophosphorylase from Escherichia coli.Q38296634
Analysis of allosteric effector binding sites of potato ADP-glucose pyrophosphorylase through reverse geneticsQ38297411
Aspartic acid 413 is important for the normal allosteric functioning of ADP-glucose pyrophosphorylaseQ38351716
Functional divergence prediction from evolutionary analysis: a case study of vertebrate hemoglobinQ40578045
Identification of regions critically affecting kinetics and allosteric regulation of the Escherichia coli ADP-glucose pyrophosphorylase by modeling and pentapeptide-scanning mutagenesisQ42006954
Insights into subunit interactions in the heterotetrameric structure of potato ADP-glucose pyrophosphorylaseQ42943301
ADP-glucose pyrophosphorylase from potato tuber: site-directed mutagenesis of homologous aspartic acid residues in the small and large subunits.Q44311765
The different large subunit isoforms of Arabidopsis thaliana ADP-glucose pyrophosphorylase confer distinct kinetic and regulatory properties to the heterotetrameric enzyme.Q44441854
Relative turnover numbers of maize endosperm and potato tuber ADP-glucose pyrophosphorylases in the absence and presence of 3-phosphoglyceric acidQ44603592
Both subunits of ADP-glucose pyrophosphorylase are regulatoryQ44879776
Two Arabidopsis ADP-glucose pyrophosphorylase large subunits (APL1 and APL2) are catalytic.Q44979725
Differential pattern of expression and sugar regulation of Arabidopsis thaliana ADP-glucose pyrophosphorylase-encoding genesQ45186953
Resurrecting the ancestral enzymatic role of a modulatory subunitQ45211611
A polymorphic motif in the small subunit of ADP-glucose pyrophosphorylase modulates interactions between the small and large subunitsQ45247924
Allosteric regulation of the higher plant ADP-glucose pyrophosphorylase is a product of synergy between the two subunitsQ45264584
Positive Darwinian selection at single amino acid sites conferring plant virus resistanceQ45348323
Characterization of an autonomously activated plant ADP-glucose pyrophosphorylaseQ46420016
Gene expression of ADP-glucose pyrophosphorylase and starch contents in rice cultured cells are cooperatively regulated by sucrose and ABA.Q46430398
Direct appraisal of the potato tuber ADP-glucose pyrophosphorylase large subunit in enzyme function by study of a novel mutant formQ46804920
Heat stability of maize endosperm ADP-glucose pyrophosphorylase is enhanced by insertion of a cysteine in the N terminus of the small subunitQ46813373
Heat stability and allosteric properties of the maize endosperm ADP-glucose pyrophosphorylase are intimately intertwinedQ46892269
Maize endosperm ADP-glucose pyrophosphorylase SHRUNKEN2 and BRITTLE2 subunit interactionsQ47674142
The two AGPase subunits evolve at different rates in angiosperms, yet they are equally sensitive to activity-altering amino acid changes when expressed in bacteriaQ48079541
Molecular architecture of the glucose 1-phosphate site in ADP-glucose pyrophosphorylases.Q50075838
Directed mutagenesis confirms the functional importance of positively selected sites in polygalacturonase inhibitor protein.Q50771447
A simple statistical method for estimating type-II (cluster-specific) functional divergence of protein sequences.Q51936782
Intermediary metabolite levels in Escherichia coli.Q53817641
Subunit interactions specify the allosteric regulatory properties of the potato tuber ADP-glucose pyrophosphorylase.Q54436030
Expression profiling of genes involved in starch synthesis in sink and source organs of rice.Q54632217
Characterization of ADP-glucose pyrophosphorylase from shrunken-2 and brittle-2 mutants of maizeQ67850934
Expression of the potato tuber ADP-glucose pyrophosphorylase in Escherichia coliQ72940526
Statistical methods for testing functional divergence after gene duplicationQ73289812
Investigation of subunit function in ADP-glucose pyrophosphorylaseQ73585211
Substrate binding mutants of the higher plant ADP-glucose pyrophosphorylaseQ74168075
ADP-Glucose pyrophosphorylase from potato tubers. Site-directed mutagenesis studies of the regulatory sitesQ77228329
ATP binding site in the plant ADP-glucose pyrophosphorylase large subunitQ79396018
Catalytic implications of the higher plant ADP-glucose pyrophosphorylase large subunitQ79505935
Solute carrier 11 cation symport requires distinct residues in transmembrane helices 1 and 6Q80565554
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectphylogeneticsQ171184
P1104number of pages11
P304page(s)67-77
P577publication date2009-07-22
P1433published inPlant PhysiologyQ3906288
P1476titlePhylogenetic analysis of ADP-glucose pyrophosphorylase subunits reveals a role of subunit interfaces in the allosteric properties of the enzyme
P478volume151