Feature selection in validating mass spectrometry database search results.

scientific article

Feature selection in validating mass spectrometry database search results. is …
instance of (P31):
scholarly articleQ13442814

External links are
P8978DBLP publication IDjournals/jbcb/FangDWL08
P356DOI10.1142/S0219720008003345
P698PubMed publication ID18324754

P50authorGerald H LushingtonQ76380391
P2093author name stringTodd D Williams
Jianwen Fang
Yinghua Dong
P2860cites workIdentifying Important Risk Factors for Survival in Kidney Graft Failure Patients Using Random Survival ForestsQ22673963
Gene selection and classification of microarray data using random forest.Q25255911
Probability-based protein identification by searching sequence databases using mass spectrometry dataQ27860736
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein databaseQ27861106
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database searchQ28211385
Protein and peptide identification algorithms using MS for use in high-throughput, automated pipelinesQ28274876
Comparing the polarities of the amino acids: side-chain distribution coefficients between the vapor phase, cyclohexane, 1-octanol, and neutral aqueous solutionQ29014511
TANDEM: matching proteins with tandem mass spectraQ29615238
Analysis of membrane and surface protein sequences with the hydrophobic moment plotQ29618183
Role of accurate mass measurement (+/- 10 ppm) in protein identification strategies employing MS or MS/MS and database searching.Q30744805
The use of proteotypic peptide libraries for protein identificationQ30854911
Support vector machines in HTS data mining: Type I MetAPs inhibition studyQ31029936
Improved classification of mass spectrometry database search results using newer machine learning approachesQ33228309
Analysis of peptide MS/MS spectra from large-scale proteomics experiments using spectrum librariesQ33253787
Statistical characterization of ion trap tandem mass spectra from doubly charged tryptic peptidesQ33640684
Mobile and localized protons: a framework for understanding peptide dissociationQ34141801
Limitations of current proteomics technologiesQ36179496
Improving reproducibility and sensitivity in identifying human proteins by shotgun proteomicsQ40540118
Influence of basic residue content on fragment ion peak intensities in low-energy collision-induced dissociation spectra of peptidesQ42928033
Qscore: an algorithm for evaluating SEQUEST database search resultsQ44727403
SILVER helps assign peptides to tandem mass spectra using intensity-based scoring.Q45966789
Intensity-based protein identification by machine learning from a library of tandem mass spectra.Q45966875
A New Algorithm for the Evaluation of Shotgun Peptide Sequencing in Proteomics: Support Vector Machine Classification of Peptide MS/MS Spectra and SEQUEST ScoresQ45967022
A computational method for assessing peptide- identification reliability in tandem mass spectrometry analysis with SEQUEST.Q47866177
Prediction of aqueous solubility and partition coefficient optimized by a genetic algorithm based descriptor selection methodQ47886757
Computational prediction of proteotypic peptides for quantitative proteomicsQ51925913
Mining a tandem mass spectrometry database to determine the trends and global factors influencing peptide fragmentationQ52008068
Recursive median partitioning for virtual screening of large databasesQ52023862
An algorithm for protein secondary structure prediction based on class predictionQ52591620
Prediction of amyloid fibril-forming proteinsQ53239648
Gene Selection for Cancer Classification using Support Vector MachinesQ56535529
P433issue1
P921main subjectdatabaseQ8513
feature selectionQ446488
P304page(s)223-240
P577publication date2008-02-01
P1433published inJournal of Bioinformatics and Computational BiologyQ6294841
P1476titleFeature selection in validating mass spectrometry database search results
P478volume6

Reverse relations

cites work (P2860)
Q33765227An improved machine learning protocol for the identification of correct Sequest search results
Q33467097Bioinformatic analysis of xenobiotic reactive metabolite target proteins and their interacting partners
Q33541894Detection and identification of potential biomarkers of breast cancer.
Q30898054Detection and identification of potential biomarkers of non-small cell lung cancer
Q33507152Discovery and identification of potential biomarkers of papillary thyroid carcinoma
Q30359799Improving the chances of successful protein structure determination with a random forest classifier
Q34450654PROTS-RF: A Robust Model for Predicting Mutation-Induced Protein Stability Changes
Q30408474Predicting residue–residue contacts using random forest models
Q30366792Random forest-based protein model quality assessment (RFMQA) using structural features and potential energy terms

Search more.