scholarly article | Q13442814 |
P356 | DOI | 10.1038/NG.3703 |
P698 | PubMed publication ID | 27776117 |
P50 | author | David N. Cooper | Q30503192 |
Gill Bejerano | Q88164421 | ||
P2093 | author name string | Jonathan A Bernstein | |
Aaron M Wenger | |||
Harendra Guturu | |||
Peter D Stenson | |||
Karthik A Jagadeesh | |||
Mark J Berger | |||
P2860 | cites work | An integrated map of genetic variation from 1,092 human genomes | Q22122153 |
Mutations in NOTCH2 cause Hajdu-Cheney syndrome, a disorder of severe and progressive bone loss | Q24295008 | ||
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes | Q24534193 | ||
Amino acid substitution matrices from protein blocks | Q24563220 | ||
Exome sequencing identifies the cause of a mendelian disorder | Q24607742 | ||
Targeted capture and massively parallel sequencing of 12 human exomes | Q24615381 | ||
Analysis of protein-coding genetic variation in 60,706 humans | Q26831376 | ||
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data | Q27860742 | ||
A method and server for predicting damaging missense mutations | Q27860835 | ||
The UCSC genome browser and associated tools | Q28273417 | ||
ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data | Q29547161 | ||
Fast and accurate long-read alignment with Burrows-Wheeler transform | Q29547193 | ||
SIFT: Predicting amino acid changes that affect protein function | Q29547211 | ||
UniProt: a hub for protein information | Q29547457 | ||
A general framework for estimating the relative pathogenicity of human genetic variants | Q29615730 | ||
Detection of nonneutral substitution rates on mammalian phylogenies | Q30080028 | ||
An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge. | Q30581758 | ||
Genic intolerance to functional variation and the interpretation of personal genomes | Q31129974 | ||
Identifying novel constrained elements by exploiting biased substitution patterns | Q33455323 | ||
Identifying a high fraction of the human genome to be under selective constraint using GERP++. | Q33769754 | ||
ACMG clinical laboratory standards for next-generation sequencing | Q33903280 | ||
A comparison of random forests, boosting and support vector machines for genomic selection | Q33915742 | ||
dbNSFP v2.0: a database of human non-synonymous SNVs and their functional predictions and annotations | Q33945578 | ||
The Human Gene Mutation Database: building a comprehensive mutation repository for clinical and molecular genetics, diagnostic testing and personalized genomic medicine | Q34374148 | ||
Clinical whole-exome sequencing for the diagnosis of mendelian disorders | Q34413680 | ||
Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology | Q34465792 | ||
Clinical exome sequencing for genetic identification of rare Mendelian disorders | Q34782655 | ||
Molecular findings among patients referred for clinical whole-exome sequencing | Q35078373 | ||
Comparison and integration of deleteriousness prediction methods for nonsynonymous SNVs in whole exome sequencing studies | Q35221430 | ||
Predicting the functional impact of protein mutations: application to cancer genomics | Q35224321 | ||
Factors influencing success of clinical genome sequencing across a broad spectrum of disorders | Q36147983 | ||
A spectral approach integrating functional genomic annotations for coding and noncoding variants | Q36515609 | ||
Identification of deleterious mutations within three human genomes | Q37363175 | ||
dbNSFP: a lightweight database of human nonsynonymous SNPs and their functional predictions | Q42059080 | ||
Predicting the functional, molecular, and phenotypic consequences of amino acid substitutions using hidden Markov models | Q42288039 | ||
The usefulness of whole-exome sequencing in routine clinical practice. | Q50657606 | ||
MutationTaster2: mutation prediction for the deep-sequencing age. | Q52877992 | ||
P433 | issue | 12 | |
P407 | language of work or name | English | Q1860 |
P304 | page(s) | 1581-1586 | |
P577 | publication date | 2016-10-24 | |
P1433 | published in | Nature Genetics | Q976454 |
P1476 | title | M-CAP eliminates a majority of variants of uncertain significance in clinical exomes at high sensitivity | |
P478 | volume | 48 |
Q92105325 | A Germline Mutation in the C2 Domain of PLCγ2 Associated with Gain-of-Function Expands the Phenotype for PLCG2-Related Diseases |
Q92432192 | A genome-first approach to aggregating rare genetic variants in LMNA for association with electronic health record phenotypes |
Q90501730 | A global functional analysis of missense mutations reveals two major hotspots in the PALB2 tumor suppressor |
Q90356350 | A homozygous missense variant in CACNB4 encoding the auxiliary calcium channel beta4 subunit causes a severe neurodevelopmental disorder and impairs channel and non-channel functions |
Q57168083 | A non-functional galanin receptor-2 in a multiple sclerosis patient |
Q90638441 | A novel disorder involving dyshematopoiesis, inflammation, and HLH due to aberrant CDC42 function |
Q92543469 | A novel missense COL10A1 mutation: c.2020G>A; p. Gly674Arg linked with the bowed legs stature in the Schmid metaphyseal chondrodysplasia-affected Chinese lineage |
Q88887070 | A novel missense variant in the SDR domain of the WWOX gene leads to complete loss of WWOX protein with early-onset epileptic encephalopathy and severe developmental delay |
Q64990080 | A novel mutation in COL1A2 leads to osteogenesis imperfecta/Ehlers-Danlos overlap syndrome with brachydactyly. |
Q47326159 | A novel mutation in SLC1A3 causes episodic ataxia. |
Q49330334 | A phenotype centric benchmark of variant prioritisation tools |
Q91224176 | A single-center study on 140 patients with cerebral cavernous malformations: 28 new pathogenic variants and functional characterization of a PDCD10 large deletion |
Q64113107 | A truncating MEIOB mutation responsible for familial primary ovarian insufficiency abolishes its interaction with its partner SPATA22 and their recruitment to DNA double-strand breaks |
Q92995898 | AVADA: toward automated pathogenic variant evidence retrieval directly from the full-text literature |
Q47549407 | An Atypical Rett Syndrome Phenotype Due to a Novel Missense Mutation in CACNA1A. |
Q92313646 | Application of Computational Biology and Artificial Intelligence Technologies in Cancer Precision Drug Discovery |
Q91796131 | Autosomal Dominant Tubulointerstitial Kidney Disease-Uromodulin Misclassified as Focal Segmental Glomerulosclerosis or Hereditary Glomerular Disease |
Q91894386 | Benchmarking subcellular localization and variant tolerance predictors on membrane proteins |
Q98184258 | Biallelic ZNF407 mutations in a neurodevelopmental disorder with ID, short stature and variable microcephaly, hypotonia, ocular anomalies and facial dysmorphism |
Q58106112 | CADD: predicting the deleteriousness of variants throughout the human genome |
Q91979959 | CAGI5: Objective performance assessments of predictions based on the Evolutionary Action equation |
Q57920932 | Cenani-Lenz syndactyly syndrome - a case report of a family with isolated syndactyly |
Q91631549 | Challenges and Considerations in Sequence Variant Interpretation for Mendelian Disorders |
Q59798411 | Challenging popular tools for the annotation of genetic variations with a real case, pathogenic mutations of lysosomal alpha-galactosidase |
Q92831842 | Characterization of intellectual disability and autism comorbidity through gene panel sequencing |
Q64120476 | ClinPhen extracts and prioritizes patient phenotypes directly from medical records to expedite genetic disease diagnosis |
Q57023939 | ClinPred: Prediction Tool to Identify Disease-Relevant Nonsynonymous Single-Nucleotide Variants |
Q64248808 | Clinical and Molecular Spectrum of Glucose-6-Phosphate Isomerase Deficiency. Report of 12 New Cases |
Q92234233 | Clinical and molecular findings in a cohort of ANO5-related myopathy |
Q64992325 | Clinical, biochemical and genetic profiles of patients with mucopolysaccharidosis type IVA (Morquio A syndrome) in Malaysia: the first national natural history cohort study. |
Q90451566 | Combined in vitro and in silico analyses of missense mutations in GNPTAB provide new insights into the molecular bases of mucolipidosis II and III alpha/beta |
Q47840577 | Comparison and optimization of in silico algorithms for predicting the pathogenicity of sodium channel variants in epilepsy |
Q64102665 | Compound Heterozygous Gene Mutations of a Large Deletion and a Missense Variant in a Chinese Patient With Severe Congenital Myasthenic Syndrome With Episodic Apnea |
Q52602398 | Comprehensive Characterization of Cancer Driver Genes and Mutations. |
Q89807400 | Comprehensive assessment of computational algorithms in predicting cancer driver mutations |
Q55603579 | Comprehensive genomic diagnosis of non-syndromic and syndromic hereditary hearing loss in Spanish patients. |
Q57170230 | Computational resources associating diseases with genotypes, phenotypes and exposures |
Q38789144 | DEOGEN2: prediction and interactive visualization of single amino acid variant deleteriousness in human proteins |
Q89462013 | De Novo Mutation in Genes Regulating Neural Stem Cell Fate in Human Congenital Hydrocephalus |
Q47842300 | De novo mutations in GRIN1 cause extensive bilateral polymicrogyria |
Q54957597 | De novo mutations of the ATP6V1A gene cause developmental encephalopathy with epilepsy. |
Q50098318 | De novo variants in SETD1B are associated with intellectual disability, epilepsy and autism |
Q90585555 | Deep Scleral Exposure: A Degenerative Outcome of End-Stage Stargardt Disease |
Q47806929 | Deleterious variants in DCHS1 are prevalent in sporadic cases of mitral valve prolapse. |
Q64226854 | Developmental delay, coarse facial features, and epilepsy in a patient with gene variants |
Q60922264 | Diagnosing rare diseases after the exome |
Q57464842 | Discovery of potential causative mutations in human coding and noncoding genome with the interactive software BasePlayer |
Q100526185 | Disease-specific variant pathogenicity prediction significantly improves variant interpretation in inherited cardiac conditions |
Q92564494 | Diversity spectrum analysis identifies mutation-specific effects of cancer driver genes |
Q89729729 | EEF1A2 mutations in epileptic encephalopathy/intellectual disability: Understanding the potential mechanism of phenotypic variation |
Q89996164 | Early-onset emphysema in a large French-Canadian family: a genetic investigation |
Q92132857 | Effect of BTD gene variants on in vitro biotinidase activity |
Q93087322 | Estimation of allele-specific fitness effects across human protein-coding sequences and implications for disease |
Q47137446 | Evaluation of in silico algorithms for use with ACMG/AMP clinical variant interpretation guidelines |
Q91674591 | Evaluation of performance of leading algorithms for variant pathogenicity predictions and designing a combinatory predictor method: application to Rett syndrome variants |
Q47388249 | Evaluation of reported pathogenic variants and their frequencies in a Japanese population based on a whole-genome reference panel of 2049 individuals. |
Q52331561 | Evaluation of the ISL1 gene in the pathogenesis of bladder exstrophy in a Swedish cohort. |
Q57066262 | Exhaustive non-synonymous variants functionality prediction enables high resolution characterization of the neurofibromin architecture |
Q64119092 | Exome Analysis Identifies a Novel Compound Heterozygous Alteration in Gene Leading to Lamellar Ichthyosis in a Child From Saudi Arabia: Case Presentation |
Q47439347 | Exome Pool-Seq in neurodevelopmental disorders. |
Q33624200 | Exome Sequencing Identified a Novel FBN2 Mutation in a Chinese Family with Congenital Contractural Arachnodactyly. |
Q64108431 | Exome sequencing of 20,791 cases of type 2 diabetes and 24,440 controls |
Q47710148 | Exome-Wide Association Study of Pancreatic Cancer Risk |
Q64251441 | Expanding the Clinical and Mutational Spectrum of Recessive -Related Classical-Like Ehlers-Danlos Syndrome |
Q42694057 | FIRE: functional inference of genetic variants that regulate gene expression |
Q64115144 | Functional characterization of 3D protein structures informed by human genetic diversity |
Q90859747 | Functional characterization of 84 PALB2 variants of uncertain significance |
Q92783676 | Further Defining the Phenotypic Spectrum of B3GAT3 Mutations and Literature Review on Linkeropathy Syndromes |
Q48157087 | GenIO: a phenotype-genotype analysis web server for clinical genomics of rare diseases. |
Q64039293 | GenePy - a score for estimating gene pathogenicity in individuals using next-generation sequencing data |
Q64120151 | Genetic analysis of neurodegenerative diseases in a pathology cohort |
Q92868822 | Genome sequencing for rightward hemispheric language dominance |
Q92330801 | Genomic analysis of a spinal muscular atrophy (SMA) discordant family identifies a novel mutation in TLL2, an activator of growth differentiation factor 8 (myostatin): a case report |
Q45063174 | Genomic analysis of an infant with intractable diarrhea and dilated cardiomyopathy |
Q47784210 | Germline MSH6 Mutation in a Patient With Two Independent Primary Glioblastomas |
Q43086692 | Germline Mutations in CDH23, Encoding Cadherin-Related 23, Are Associated with Both Familial and Sporadic Pituitary Adenomas |
Q41637022 | Germline Mutations in Cancer Predisposition Genes are Frequent in Sporadic Sarcomas |
Q91346646 | High prevalence of cancer-associated TP53 variants in the gnomAD database: A word of caution concerning the use of variant filtering |
Q46235696 | High-Throughput Characterization of Cascade type I-E CRISPR Guide Efficacy Reveals Unexpected PAM Diversity and Target Sequence Preferences |
Q98303251 | Homozygous deletion of MYADML2 in cranial asymmetry, reduced bone maturation, multiple dislocations, lumbar lordosis, and prominent clavicles |
Q64272238 | How good are pathogenicity predictors in detecting benign variants? |
Q38609392 | Identification of NCAN as a candidate gene for developmental dyslexia |
Q93163315 | Identification of a novel ANO5 missense mutation in a Chinese family with familial florid osseous dysplasia |
Q91100012 | Identification of de novo CSNK2A1 and CSNK2B variants in cases of global developmental delay with seizures |
Q91219244 | Identification of mutations in Malaysian patients with argininosuccinate lyase (ASL) deficiency |
Q55387060 | Impact of lower uterine segment involvement in type II endometrial cancer and the unique mutational profile of serous tumors. |
Q59126521 | Impact of structural prior knowledge in SNV prediction: Towards causal variant finding in rare disease |
Q104111130 | Improving the informativeness of Mendelian disease-derived pathogenicity scores for common disease |
Q92921963 | In-silico Analysis of NF1 Missense Variants in ClinVar: Translating Variant Predictions into Variant Interpretation and Classification |
Q52647099 | Incidental and clinically actionable genetic variants in 1005 whole exomes and genomes from Qatar. |
Q56376530 | LRP10 genetic variants in familial Parkinson's disease and dementia with Lewy bodies: a genome-wide linkage and sequencing study |
Q64985303 | Lack of evidence for a causal role of CALR3 in monogenic cardiomyopathy. |
Q61118461 | Loss-of-function mutations in QRICH2 cause male infertility with multiple morphological abnormalities of the sperm flagella |
Q89454665 | Loss-of-function mutations in UDP-Glucose 6-Dehydrogenase cause recessive developmental epileptic encephalopathy |
Q92565011 | MAPT p.V363I mutation: A rare cause of corticobasal degeneration |
Q98181056 | MISTIC: A prediction tool to reveal disease-relevant deleterious missense variants |
Q100294994 | MITO-FIND: A study in 390 patients to determine a diagnostic strategy for mitochondrial disease |
Q47257087 | Missense Variants in RHOBTB2 Cause a Developmental and Epileptic Encephalopathy in Humans, and Altered Levels Cause Neurological Defects in Drosophila. |
Q47597712 | Mitochondrial 3-Hydroxy-3-Methylglutaryl-CoA Synthase Deficiency: Unique Presenting Laboratory Values and a Review of Biochemical and Clinical Features |
Q90431767 | Modification of the PROM1 disease phenotype by a mutation in ABCA4 |
Q92901570 | Molecular Modelling and Dynamics Study of nsSNP in STXBP1 Gene in Early Infantile Epileptic Encephalopathy Disease |
Q42368959 | Molecular analysis of TSC1 and TSC2 genes and phenotypic correlations in Brazilian families with tuberous sclerosis. |
Q93120440 | Molecular diagnostic workflow, clinical interpretation of sequence variants, and data repository procedures in 140 individuals with familial cerebral cavernous malformations |
Q59136205 | Multimodal imaging in a pedigree of X-linked Retinoschisis with a novel RS1 variant |
Q64096925 | Mutational load in carotid body tumor |
Q57023903 | Mutations in KCNK4 that Affect Gating Cause a Recognizable Neurodevelopmental Syndrome |
Q64040166 | NBAS pathogenic variants: Defining the associated clinical and facial phenotype and genotype-phenotype correlations |
Q59334977 | Need for high-resolution Genetic Analysis in iPSC: Results and Lessons from the ForIPS Consortium |
Q93105834 | New Chondrosarcoma Cell Lines with Preserved Stem Cell Properties to Study the Genomic Drift During In Vitro/In Vivo Growth |
Q91188042 | Next-generation sequencing of 32 genes associated with hereditary aortopathies and related disorders of connective tissue in a cohort of 199 patients |
Q90661779 | Novel biallelic variants in MSTO1 associated with mitochondrial myopathy |
Q58585109 | Novel germline missense DDX41 variant in a patient with an adult-onset myeloid neoplasm with excess blasts without dysplasia |
Q92557960 | Novel mutation in HTRA1 in a family with diffuse white matter lesions and inflammatory features |
Q60916870 | Novel mutations in the gene in Japanese patients with X-linked congenital retinoschisis |
Q49603502 | PMut: a web-based tool for the annotation of pathological variants on proteins, 2017 update. |
Q92258187 | Pathogenicity Reclasssification of RPE65 Missense Variants Related to Leber Congenital Amaurosis and Early-Onset Retinal Dystrophy |
Q90635883 | Performance evaluation of pathogenicity-computation methods for missense variants |
Q47570862 | Pharmacogenomics of CYP2C9: Functional and Clinical Considerations |
Q104516310 | Phenotypic differences of mutation-negative cases in Gitelman syndrome clinically diagnosed in adulthood |
Q89575513 | Phrank measures phenotype sets similarity to greatly improve Mendelian diagnostic disease prioritization |
Q62495272 | Predicting the clinical impact of human mutation with deep neural networks |
Q98291826 | Prediction of the Impact of Deleterious Nonsynonymous Single Nucleotide Polymorphisms on the Human RRM2B Gene: A Molecular Modeling Study |
Q47286842 | Protein-altering variants of PTPN2 in childhood-onset Type 1A diabetes. |
Q92264369 | QTG-Finder: A Machine-Learning Based Algorithm To Prioritize Causal Genes of Quantitative Trait Loci in Arabidopsis and Rice |
Q89038112 | Real-world clinical applicability of pathogenicity predictors assessed on SERPINA1 mutations in alpha-1-antitrypsin deficiency |
Q59349393 | Reply: ATAD1 encephalopathy and stiff baby syndrome: a recognizable clinical presentation |
Q33701488 | Robust and rapid algorithms facilitate large-scale whole genome sequencing downstream analysis in an integrative framework |
Q62659082 | S-CAP extends pathogenicity prediction to genetic variants that affect RNA splicing |
Q64045373 | SimPEL: Simulation-based power estimation for sequencing studies of low-prevalence conditions |
Q88682248 | Somatic mutation landscape of a meningioma and its pulmonary metastasis |
Q90275876 | Study of chromatin remodeling genes implicates SMARCA4 as a putative player in oncogenesis in neuroblastoma |
Q59830301 | Synergistic Interaction of HOXB13 and CIP2A Predisposes to Aggressive Prostate Cancer |
Q41275372 | Syntool: A Novel Region-Based Intolerance Score to Single Nucleotide Substitution for Synonymous Mutations Predictions Based on 123,136 Individuals |
Q91727326 | Systematic discovery of conservation states for single-nucleotide annotation of the human genome |
Q47861357 | Target 5000: Target Capture Sequencing for Inherited Retinal Degenerations. |
Q53681753 | Targeted deep sequencing of gastric marginal zone lymphoma identified alterations of TRAF3 and TNFAIP3 that were mutually exclusive for MALT1 rearrangement. |
Q64055522 | Targeted next generation sequencing in 112 Chinese patients with intellectual disability/developmental delay: novel mutations and candidate gene |
Q58802463 | Targeted next-generation sequencing as a comprehensive test for Mendelian diseases: a cohort diagnostic study |
Q96952509 | Targeted sequencing of FH-deficient uterine leiomyomas reveals biallelic inactivating somatic fumarase variants and allows characterization of missense variants |
Q92191748 | Targeted sequencing of histologically defined serous endometrial cancer reflects prognosis and correlates with preoperative biopsy |
Q52776227 | Tarsal-carpal coalition syndrome: Report of a novel missense mutation in NOG gene and phenotypic delineation. |
Q91052598 | The CYSMA web server: An example of integrative tool for in silico analysis of missense variants identified in Mendelian disorders |
Q60683707 | The Genetic Landscape of Diamond-Blackfan Anemia |
Q36324942 | The Human Gene Mutation Database: towards a comprehensive repository of inherited mutation data for medical research, genetic diagnosis and next-generation sequencing studies |
Q52753945 | The Rapid-Onset Chorioretinopathy Phenotype of ABCA4 Disease. |
Q89947923 | The genetics of situs inversus without primary ciliary dyskinesia |
Q90159879 | The influence of rare variants in circulating metabolic biomarkers |
Q56344652 | The landscape of epilepsy-related GATOR1 variants |
Q64039834 | The lysosomal storage disorders mucolipidosis type II, type III alpha/beta, and type III gamma: Update on GNPTAB and GNPTG mutations |
Q57818861 | Updated Genetic Testing of Primary Hyperoxaluria Type 1 in a Chinese Population: Results from a Single Center Study and a Systematic Review |
Q90122590 | Using MARRVEL v1.2 for Bioinformatics Analysis of Human Genes and Variant Pathogenicity |
Q47097898 | VarCards: an integrated genetic and clinical database for coding variants in the human genome. |
Q91202021 | Variable cardiovascular phenotypes associated with SMAD2 pathogenic variants |
Q91578685 | What went wrong with variant effect predictor performance for the PCM1 challenge |
Q61448736 | Whole Exome Sequencing Identifies a Novel Pathogenic RET Variant in Hirschsprung Disease |
Q89849814 | Whole-Exome Sequencing Reveals a Rare Missense Variant in SLC16A9 in a Pedigree with Early-Onset Gout |
Q60946938 | Whole-Genome Sequencing Identifies a Novel Variation of Gene Coordinating With Heterozygous Germline Mutation of to Enhance Hepatoblastoma Oncogenesis |
Q64041189 | Xrare: a machine learning method jointly modeling phenotypes and genetic evidence for rare disease diagnosis |
Q58618483 | approach to identify non-synonymous SNPs with highest predicted deleterious effect on protein function in human obesity related gene, () |
Q64039433 | eDiVA-Classification and prioritization of pathogenic variants for clinical diagnostics |