Amine hydration: a united-atom force-field solution

scientific article published in September 2005

Amine hydration: a united-atom force-field solution is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1002/CPHC.200400542
P8608Fatcat IDrelease_dy7w73s7mnadve37ineg2k7rqy
P698PubMed publication ID16075431

P50authorChris OostenbrinkQ30505204
Wilfred F van GunsterenQ52153822
P2093author name stringDaniel Juchli
P2860cites workComparison of simple potential functions for simulating liquid waterQ26778447
All-atom empirical potential for molecular modeling and dynamics studies of proteinsQ27860468
Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanesQ29397708
A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6Q29617517
Free energy via molecular simulation: applications to chemical and biomolecular systemsQ38648060
Calculation of the free energy of solvation for neutral analogs of amino acid side chainsQ43956197
Calculation of the water–cyclohexane transfer free energies of neutral amino acid side‐chain analogs using the OPLS all‐atom force fieldQ44600334
The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambinQ47682341
CHARMM: A program for macromolecular energy, minimization, and dynamics calculationsQ53340989
AMBER: Assisted model building with energy refinement. A general program for modeling molecules and their interactionsQ53341450
A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic MoleculesQ55918670
Accurate First Principles Calculation of Molecular Charge Distributions and Solvation Energies from Ab Initio Quantum Mechanics and Continuum Dielectric TheoryQ55968603
An improved GROMOS96 force field for aliphatic hydrocarbons in the condensed phaseQ56225272
Extremely precise free energy calculations of amino acid side chain analogs: Comparison of common molecular mechanics force fields for proteinsQ56776034
Molecular dynamics with coupling to an external bathQ57569060
The GROMOS Biomolecular Simulation Program PackageQ57746723
Parametrization of aliphatic CHn united atoms of GROMOS96 force fieldQ58616298
A new method for predicting binding affinity in computer-aided drug designQ72408636
Development and Testing of the OPLS All-Atom Force Field on Conformational Energetics and Properties of Organic LiquidsQ99192955
P433issue9
P304page(s)1800-1804
P577publication date2005-09-01
P1433published inChemPhysChemQ2012739
P1476titleAmine hydration: a united-atom force-field solution
P478volume6

Reverse relations

cites work (P2860)
Q21145303A systematic framework for molecular dynamics simulations of protein post-translational modifications
Q47977524Calculation of binding free energies of inhibitors to plasmepsin II.
Q33373402Evaluation of an inverse molecular design algorithm in a model binding site
Q46973827Force field evaluation for biomolecular simulation: free enthalpies of solvation of polar and apolar compounds in various solvents
Q26865357Rational approaches to improving selectivity in drug design
Q58005410Reparametrisation of united-atom amine solvation in the GROMOS force field
Q50764506Time-dependent vibrational spectral analysis of first principles trajectory of methylamine with wavelet transform.

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