| scholarly article | Q13442814 |
| P2093 | author name string | Masaru Tomita | |
| Yasushi Ishihama | |||
| Takeshi Masuda | |||
| P2860 | cites work | Comparison of SDS- and methanol-assisted protein solubilization and digestion methods for Escherichia coli membrane proteome analysis by 2-D LC-MS/MS. | Q54446519 |
| P433 | issue | 2 | |
| P304 | page(s) | 731-740 | |
| P577 | publication date | 2008-02-01 | |
| P1433 | published in | Journal of Proteome Research | Q3186939 |
| P1476 | title | Phase transfer surfactant-aided trypsin digestion for membrane proteome analysis | |
| P478 | volume | 7 |
| Q33554345 | "Hot standards" for the thermoacidophilic archaeon Sulfolobus solfataricus |
| Q58796006 | A Single Tim Translocase in the Mitosomes of Giardia intestinalis Illustrates Convergence of Protein Import Machines in Anaerobic Eukaryotes |
| Q38847639 | A comparative quantitative proteomic study identifies new proteins relevant for sulfur oxidation in the purple sulfur bacterium Allochromatium vinosum |
| Q35980499 | A general protease digestion procedure for optimal protein sequence coverage and post-translational modifications analysis of recombinant glycoproteins: application to the characterization of human lysyl oxidase-like 2 glycosylation |
| Q47213305 | A multi-omics approach reveals function of Secretory Carrier-Associated Membrane Proteins in wood formation of Populus trees. |
| Q54120519 | ASK family kinases mediate cellular stress and redox signaling to circadian clock. |
| Q50878596 | Absolute Phosphorylation Stoichiometry Analysis by Motif-Targeting Quantitative Mass Spectrometry. |
| Q49881851 | Acadian variant of Fanconi syndrome is caused by mitochondrial respiratory chain complex I deficiency due to a non-coding mutation in complex I assembly factor NDUFAF6. |
| Q48506881 | Accelerated SDS depletion from proteins by transmembrane electrophoresis: impacts of Joule heating |
| Q61640562 | Acetaminophen-induced -nitrosylation and -sulfenylation signalling in 3D cultured hepatocarcinoma cell spheroids |
| Q36584397 | Alterations of the spindle checkpoint pathway in clinicopathologically aggressive CpG island methylator phenotype clear cell renal cell carcinomas |
| Q48103314 | Amnionless-mediated glycosylation is crucial for cell surface targeting of cubilin in renal and intestinal cells. |
| Q43230036 | Analysis of integral membrane proteins by heat gel-embedment combined with improved in-gel digestions |
| Q92634519 | Analysis of protein chlorination by mass spectrometry |
| Q36800040 | Analysis of stromal cell secretomes reveals a critical role for stromal cell-derived hepatocyte growth factor and fibronectin in angiogenesis |
| Q36662464 | Analysis of the immune response of human dendritic cells to Mycobacterium tuberculosis by quantitative proteomics. |
| Q59335722 | Campylobacter jejuni bile exposure influences outer membrane vesicles protein content and bacterial interaction with epithelial cells |
| Q36158057 | Changes in protein abundance are observed in bacterial isolates from a natural host |
| Q55174819 | Characterization of Chicken Tumor Necrosis Factor-α, a Long Missed Cytokine in Birds. |
| Q37152834 | Characterization of N-terminal structure of TLR2-activating lipoprotein in Staphylococcus aureus |
| Q58762763 | Chlorination and oxidation of human plasma fibronectin by myeloperoxidase-derived oxidants, and its consequences for smooth muscle cell function |
| Q59807449 | Chlorination and oxidation of the extracellular matrix protein laminin and basement membrane extracts by hypochlorous acid and myeloperoxidase |
| Q64112453 | Combined Transcriptome and Proteome Analysis of Immortalized Human Keratinocytes Expressing Human Papillomavirus 16 (HPV16) Oncogenes Reveals Novel Key Factors and Networks in HPV-Induced Carcinogenesis |
| Q37080677 | Combining results from lectin affinity chromatography and glycocapture approaches substantially improves the coverage of the glycoproteome |
| Q38669393 | Common errors in mass spectrometry-based analysis of post-translational modifications |
| Q93017557 | Comparative Integrated Omics Analysis of the Hfq Regulon in Bordetella pertussis |
| Q50892837 | Comparison of detergent-based sample preparation workflows for LTQ-Orbitrap analysis of the Escherichia coli proteome. |
| Q38735793 | Complementary proteomic approaches reveal mitochondrial dysfunction, immune and inflammatory dysregulation in a mouse model of Gulf War Illness. |
| Q47859883 | Comprehensive behavioral study and proteomic analyses of CRMP2-deficient mice |
| Q89848837 | Comprehensive characterization of the phosphoproteome of gastric cancer from endoscopic biopsy specimens |
| Q64267852 | Comprehensive proteomic analysis of exoproteins expressed by ERIC I, II, III and IV Paenibacillus larvae genotypes reveals a wide range of virulence factors |
| Q47894409 | Construction and Optimization of a Heterologous Pathway for Protocatechuate Catabolism in Escherichia coli Enables Bioconversion of Model Aromatic Compounds. |
| Q37897206 | Current methodologies for proteomics of bacterial surface-exposed and cell envelope proteins |
| Q89387329 | Cyc8p and Tup1p transcription regulators antagonistically regulate Flo11p expression and complexity of yeast colony biofilms |
| Q92026818 | Cyclization of Single-Chain Fv Antibodies Markedly Suppressed Their Characteristic Aggregation Mediated by Inter-Chain VH-VL Interactions |
| Q89986397 | Cyclocreatine Transport by SLC6A8, the Creatine Transporter, in HEK293 Cells, a Human Blood-Brain Barrier Model Cell, and CCDSs Patient-Derived Fibroblasts |
| Q41620292 | Deep Phospho- and Phosphotyrosine Proteomics Identified Active Kinases and Phosphorylation Networks in Colorectal Cancer Cell Lines Resistant to Cetuximab |
| Q41923212 | Deletion of the L-Lactate Dehydrogenase Gene ldh in Streptococcus pyogenes Leads to a Loss of SpeB Activity and a Hypovirulent Phenotype |
| Q28547327 | Differential Proteome Analysis Identifies TGF-β-Related Pro-Metastatic Proteins in a 4T1 Murine Breast Cancer Model |
| Q47235483 | Differential regulation of the transcriptomic and secretomic landscape of sensor and effector functions of human airway epithelial cells |
| Q33718710 | Discovery of colorectal cancer biomarker candidates by membrane proteomic analysis and subsequent verification using selected reaction monitoring (SRM) and tissue microarray (TMA) analysis |
| Q91892998 | Discovery of novel biomarkers for atherosclerotic aortic aneurysm through proteomics-based assessment of disease progression |
| Q42823933 | Dried polyacrylamide gel absorption: A method for efficient elimination of the interferences from SDS‐solubilized protein samples in mass spectrometry‐based proteome analysis |
| Q47301010 | Dynamic secretome of Trichomonas vaginalis: Case study of β-amylases |
| Q47866494 | Effects of long-term low oxygen tension in human chondrosarcoma cells. |
| Q51828257 | Electrophoretically driven SDS removal and protein fractionation in the shotgun analysis of membrane proteomes. |
| Q37714298 | Enhanced FASP (eFASP) to increase proteome coverage and sample recovery for quantitative proteomic experiments |
| Q46925961 | Enhanced recovery of lyophilized peptides in shotgun proteomics by using an LC-ESI-MS compatible surfactant. |
| Q97538205 | Establishment and validation of highly accurate formalin-fixed paraffin-embedded quantitative proteomics by heat-compatible pressure cycling technology using phase-transfer surfactant and SWATH-MS |
| Q37083695 | Establishment of TSH β real-time monitoring system in mammalian photoperiodism |
| Q41831171 | Establishment of a tagged variant of Lgr4 receptor suitable for functional and expression studies in the mouse. |
| Q42954264 | Evaluation and optimization of removal of an acid‐insoluble surfactant for shotgun analysis of membrane proteome |
| Q58080287 | Evaluation of sample preparation methods for mass spectrometry-based proteomic analysis of barley leaves |
| Q92638624 | Evaluation of sodium deoxycholate as solubilization buffer for oil palm proteomics analysis |
| Q44571973 | Evaluation of the combinative application of SDS and sodium deoxycholate to the LC-MS-based shotgun analysis of membrane proteomes |
| Q37623639 | Expanding proteome coverage with orthogonal-specificity α-lytic proteases |
| Q36683383 | Extraction and identification of membrane proteins from black widow spider eggs. |
| Q33846197 | Extraction, Enrichment, Solubilization, and Digestion Techniques for Membrane Proteomics |
| Q92189777 | Fam208a orchestrates interaction protein network essential for early embryonic development and cell division |
| Q58105524 | FlashPack: Fast and simple preparation of ultra-high performance capillary columns for LC-MS |
| Q47139134 | Flotillin scaffold activity contributes to type VII secretion system assembly in Staphylococcus aureus |
| Q50894478 | From the Cover: Comparative Proteomics Reveals Silver Nanoparticles Alter Fatty Acid Metabolism and Amyloid Beta Clearance for Neuronal Apoptosis in a Triple Cell Coculture Model of the Blood-Brain Barrier. |
| Q38966424 | Full Membrane Protein Coverage Digestion and Quantitative Bottom-Up Mass Spectrometry Proteomics |
| Q46645500 | Global metabolic network reorganization by adaptive mutations allows fast growth of Escherichia coli on glycerol |
| Q36957711 | Glycomics and glycoproteomics of membrane proteins and cell-surface receptors: Present trends and future opportunities |
| Q99564902 | Hepatitis C virus enhances Rubicon expression, leading to autophagy inhibition and intracellular innate immune activation |
| Q46069977 | Heterodimerization of the prostaglandin E2 receptor EP2 and the calcitonin receptor CTR. |
| Q91322455 | High-throughput and high-sensitivity phosphoproteomics with the EasyPhos platform |
| Q48604859 | Hippocampal Proteomic Analysis Reveals Distinct Pathway Deregulation Profiles at Early and Late Stages in a Rat Model of Alzheimer's-Like Amyloid Pathology |
| Q89174628 | Identification of Phosphorylated Proteins on a Global Scale |
| Q55012452 | Identification of blood biomarkers in glioblastoma by SWATH mass spectrometry and quantitative targeted absolute proteomics. |
| Q64982716 | Improved phosphoproteomic analysis for phosphosignaling and active-kinome profiling in Matrigel-embedded spheroids and patient-derived organoids. |
| Q42549204 | Improved protease digestion conditions for membrane protein detection |
| Q46731559 | Improving Proteome Coverage and Sample Recovery with Enhanced FASP (eFASP) for Quantitative Proteomic Experiments |
| Q38364597 | Improving T cell-induced response to subunit vaccines: opportunities for a proteomic systems approach |
| Q45931414 | In macropore tryptic digestion at acidic pH and its implication for proteomics. |
| Q90665191 | In vitro reconstitution of functional small ribosomal subunit assembly for comprehensive analysis of ribosomal elements in E. coli |
| Q39001133 | Increased Dynamics of Tricarboxylic Acid Cycle and Glutamate Synthesis in Obese Adipose Tissue: IN VIVO METABOLIC TURNOVER ANALYSIS. |
| Q52345798 | Inducing hair follicle neogenesis with secreted proteins enriched in embryonic skin. |
| Q36876153 | Integral membrane proteins and bilayer proteomics |
| Q39454390 | Integral membrane proteins: bottom-up, top-down and structural proteomics. |
| Q33813499 | Integrative features of the yeast phosphoproteome and protein-protein interaction map |
| Q48912848 | Large-scale N-glycoproteome map of rat brain tissue: simultaneous characterization of insoluble and soluble protein fractions. |
| Q53048764 | Large-scale multiplex absolute protein quantification of drug-metabolizing enzymes and transporters in human intestine, liver, and kidney microsomes by SWATH-MS: Comparison with MRM/SRM and HR-MRM/PRM. |
| Q35948309 | Laser capture microdissection to identify septum-associated proteins in Aspergillus nidulans. |
| Q92668838 | MS1 ion current-based quantitative proteomics: A promising solution for reliable analysis of large biological cohorts |
| Q37021702 | Mass spectrometry-based absolute quantification reveals rhythmic variation of mouse circadian clock proteins |
| Q38211274 | Mass spectrometry-based membrane proteomics in cancer biomarker discovery |
| Q35900355 | Membrane Protein Analyses Using Alkylated Trihydroxyacetophenone (ATHAP) as a MALDI Matrix |
| Q50934876 | Membrane protein isolation and identification by covalent binding for proteome research. |
| Q38057716 | Membrane proteomics by high performance liquid chromatography-tandem mass spectrometry: Analytical approaches and challenges |
| Q37483905 | Methionine sulfoxides in serum proteins as potential clinical biomarkers of oxidative stress |
| Q39028018 | Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells |
| Q38735370 | Modified filter-aided sample preparation (FASP) method increases peptide and protein identifications for shotgun proteomics |
| Q35659340 | Molecular architecture of the stria vascularis membrane transport system, which is essential for physiological functions of the mammalian cochlea. |
| Q50888538 | Multiomics approach to identify novel biomarkers for dilated cardiomyopathy: Proteome and transcriptome analyses of 4C30 dilated cardiomyopathy mouse model. |
| Q58753327 | Multiple Aspects of PIP2 Involvement in Gametogenesis |
| Q35906038 | Nematode-specific tRNAs that decode an alternative genetic code for leucine |
| Q36155966 | Neutrophil Extracellular Traps in Ulcerative Colitis: A Proteome Analysis of Intestinal Biopsies |
| Q35258659 | New mass-spectrometry-compatible degradable surfactant for tissue proteomics |
| Q36498171 | Novel cystine transporter in renal proximal tubule identified as a missing partner of cystinuria-related plasma membrane protein rBAT/SLC3A1. |
| Q42163325 | Novel protein extraction approach using micro-sized chamber for evaluation of proteins eluted from formalin-fixed paraffin-embedded tissue sections |
| Q64985335 | Nuclear receptor/Wnt beta-catenin interactions are regulated via differential CBP/p300 coactivator usage. |
| Q92643207 | Oxidised Met147 of human serum albumin is a biomarker of oxidative stress, reflecting glycaemic fluctuations and hypoglycaemia in diabetes |
| Q50483675 | Peptide separation methodologies for in-depth proteomics in Arabidopsis. |
| Q28476662 | Perfluorooctanoic acid for shotgun proteomics |
| Q40067776 | Plasma proteome coverage is increased by unique peptide recovery from sodium deoxycholate precipitate. |
| Q64082695 | Prevention of respiratory syncytial virus infection with probiotic lactic acid bacterium Lactobacillus gasseri SBT2055 |
| Q88504629 | Protection of Coral Larvae from Thermally Induced Oxidative Stress by Redox Nanoparticles |
| Q38395246 | Proteome stability analysis of snap frozen, RNAlater preserved, and formalin-fixed paraffin-embedded human colon mucosal biopsies. |
| Q47584598 | Proteomic Analysis of Rice Golgi Membranes Isolated by Floating Through Discontinuous Sucrose Density Gradient |
| Q50606252 | Proteomic CNS profile of delayed cognitive impairment in mice exposed to Gulf War agents. |
| Q39287895 | Proteomic analysis of ganglioside-associated membrane molecules: substantial basis for molecular clustering. |
| Q104570478 | Proteomic profile of vitreous in patients with tubercular uveitis |
| Q42876810 | Proteomics dataset: The colon mucosa from inflammatory bowel disease patients, gastrointestinal asymptomic rheumatoid arthritis patients, and controls. |
| Q48624688 | Proteomics of hydrophobic samples: Fast, robust and low-cost workflows for clinical approaches |
| Q42371873 | Quantitation of putative colorectal cancer biomarker candidates in serum extracellular vesicles by targeted proteomics |
| Q50437928 | Quantitative Phosphoproteomic Analysis of Brain Tissues. |
| Q91859832 | Quantitative Proteomics of the Mitotic Chromosome Scaffold Reveals the Association of BAZ1B with Chromosomal Axes |
| Q41851003 | Quantitative assessment of in-solution digestion efficiency identifies optimal protocols for unbiased protein analysis |
| Q37479666 | Quantitative proteomic analysis of cultured skin fibroblast cells derived from patients with triglyceride deposit cardiomyovasculopathy |
| Q33362596 | Quantitative proteomics reveals protein profiles underlying major transitions in aspen wood development |
| Q42218957 | Quantitative proteomics reveals that plasma membrane microdomains from poplar cell suspension cultures are enriched in markers of signal transduction, molecular transport, and callose biosynthesis |
| Q39977356 | Rapid detergent removal from peptide samples with ethyl acetate for mass spectrometry analysis |
| Q97070245 | Reconstituted cell-free protein synthesis using in vitro transcribed tRNAs |
| Q33361509 | Removal of detergents from protein digests for mass spectrometry analysis |
| Q47164149 | Reprogramming of leukemic cell metabolism through the naphthoquinonic compound Quambalarine B. |
| Q34747491 | Resolution of translation start site for the human Kell glycoprotein. |
| Q33808162 | Rho-kinase inhibitor Y-27632 and hypoxia synergistically enhance chondrocytic phenotype and modify S100 protein profiles in human chondrosarcoma cells |
| Q38038508 | Sample preparation for the analysis of membrane proteomes by mass spectrometry |
| Q38475993 | Sample preparation strategies for improving the identification of membrane proteins by mass spectrometry |
| Q34652207 | Sodium laurate, a novel protease- and mass spectrometry-compatible detergent for mass spectrometry-based membrane proteomics |
| Q93159928 | Spleen tyrosine kinase activity regulates epidermal growth factor receptor signaling pathway in ovarian cancer |
| Q42233008 | Static and dynamic protein phosphorylation in the Vaccinia virion |
| Q104111440 | Stepwise cell fate decision pathways during osteoclastogenesis at single-cell resolution |
| Q47694532 | Straightforward Protocol for Gel-Free Proteomic Analysis of Adipose Tissue |
| Q40159141 | Symbiosis induces widespread changes in the proteome of the model cnidarian Aiptasia. |
| Q38963563 | Systematic profiling of the bacterial phosphoproteome reveals bacterium-specific features of phosphorylation. |
| Q36112218 | Systems-level effects of ectopic galectin-7 reconstitution in cervical cancer and its microenvironment |
| Q36604376 | Temporal Phosphoproteome Dynamics Induced by an ATP Synthase Inhibitor Citreoviridin |
| Q92496992 | Temporal proteome dynamics of Clostridium cellulovorans cultured with major plant cell wall polysaccharides |
| Q89896708 | The Hypoxic Proteome and Metabolome of Barley (Hordeum vulgare L.) with and without Phytoglobin Priming |
| Q64118355 | The MEK-ERK-MST1 Axis Potentiates the Activation of the Extrinsic Apoptotic Pathway during GDC-0941 Treatment in Jurkat T Cells |
| Q47417123 | The Multiple Localized Glyceraldehyde-3-Phosphate Dehydrogenase Contributes to the Attenuation of the Francisella tularensis dsbA Deletion Mutant. |
| Q36745136 | The Proteomic Profile of Deleted in Breast Cancer 1 (DBC1) Interactions Points to a Multifaceted Regulation of Gene Expression |
| Q96230284 | The effect of phytoglobin overexpression on the plant proteome during nonhost response of barley (Hordeum vulgare) to wheat powdery mildew (Blumeria graminis f. sp. tritici) |
| Q91973894 | The effect of ω-3 polyunsaturated fatty acids on the liver lipidome, proteome and bile acid profile: parenteral versus enteral administration |
| Q47290844 | The function of two type II metacaspases in woody tissues of Populus trees |
| Q38974453 | The human oral metaproteome reveals potential biomarkers for caries disease. |
| Q35340591 | The requirement for fibroblasts in angiogenesis: fibroblast-derived matrix proteins are essential for endothelial cell lumen formation |
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| Q37808129 | Tools for phospho- and glycoproteomics of plasma membranes |
| Q42924043 | Unbiased quantitation of Escherichia coli membrane proteome using phase transfer surfactants |
| Q90102154 | Universal Plant Phosphoproteomics Workflow and Its Application to Tomato Signaling in Response to Cold Stress |
| Q51080164 | Utilization of Liver Microsomes to Estimate Hepatic Intrinsic Clearance of Monoamine Oxidase Substrate Drugs in Humans. |
| Q42367787 | Zfp296 negatively regulates H3K9 methylation in embryonic development as a component of heterochromatin |
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