Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers

scientific article published in May 2006

Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1111/J.1461-0248.2006.00889.X
P698PubMed publication ID16643306
P5875ResearchGate publication ID7138525

P50authorRobert J. ToonenQ42689937
Kimberly A SelkoeQ89311848
P2860cites workHomoplasy and mutation model at microsatellite loci and their consequences for population genetics analysisQ34808348
micro-checker: software for identifying and correcting genotyping errors in microsatellite dataQ60293983
GENEPOP (Version 1.2): Population Genetics Software for Exact Tests and EcumenicismQ104206347
P433issue5
P407language of work or nameEnglishQ1860
P921main subjectmicrosatelliteQ265193
P304page(s)615-629
P577publication date2006-05-01
P1433published inEcology LettersQ1282051
P1476titleMicrosatellites for ecologists: a practical guide to using and evaluating microsatellite markers
P478volume9

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cites work (P2860)
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Q33611855Genetic structuring of remnant forest patches in an endangered medicinal tree in North-western Ethiopia
Q51735714Genetic variation and DNA fingerprinting of durian types in Malaysia using simple sequence repeat (SSR) markers.
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Q36700171Genome-wide analysis of microsatellite polymorphism in chicken circumventing the ascertainment bias
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Q36939255Limited contemporary gene flow and high self-replenishment drives peripheral isolation in an endemic coral reef fish
Q34450145Linking phenology to mating system: exploring the reproductive biology of the threatened palm species Butia eriospatha
Q42701654Local selection in the presence of high levels of gene flow: Evidence of heterogeneous insecticide selection pressure across Ugandan Culex quinquefasciatus populations
Q100416629Long-lived larch clones may conserve adaptations that could restrict treeline migration in northern Siberia
Q46953752Meta-analysis reveals lower genetic diversity in overfished populations
Q92047913Microsatellite Marker Discovery in the Stingless Bee Uruçu-Amarela (Melipona rufiventris Group, Hymenoptera, Meliponini) for Population Genetic Analysis
Q38368126Microsatellite Mutation Rate in Atlantic Sturgeon (Acipenser oxyrinchus).
Q39650069Microsatellite analysis of the genetic relationships between wild and cultivated giant grouper in the South China Sea.
Q44145904Microsatellite characterization of subspecies and their hybrids in Culex pipiens complex (Diptera: Culicidae) mosquitoes along a north-south transect in the central United States
Q59790206Microsatellite development from genome skimming and transcriptome sequencing: comparison of strategies and lessons from frog species
Q34956378Microsatellite loci characterized in the leaf-cutter ant Atta laevigata
Q31102962Microsatellite loci discovery from next-generation sequencing data and loci characterization in the epizoic barnacle Chelonibia testudinaria (Linnaeus, 1758).
Q46454695Microsatellite loci over a thirty-three year period for a malaria parasite (Plasmodium mexicanum): bottleneck in effective population size and effect on allele frequencies
Q90419713Microsatellite marker set for genetic diversity assessment of primitive Chitala chitala (Hamilton, 1822) derived through SMRT sequencing technology
Q39673840Microsatellite markers and cytoplasmic sequences reveal contrasting pattern of spatial genetic structure in the red algae species complex Mazzaella laminarioides
Q35846275Microsatellite markers for Cryptolestes ferrugineus (Coleoptera: Laemophloeidae) and other Cryptolestes species
Q36090389Microsatellite markers from tea green leafhopper Empoasca (Matsumurasca) onukii: a powerful tool for studying genetic structure in tea plantations
Q40429639Microsatellite markers suggest high genetic diversity in an urban population of Cooper's hawks (Accipiter cooperii).
Q56491151Microsatellite population genetics of the emerald ash borer (Agrilus planipennis Fairmaire): comparisons between Asian and North American populations
Q34042821Microsatellite support for active inbreeding in a cichlid fish
Q34592702Microsatellites for next-generation ecologists: a post-sequencing bioinformatics pipeline.
Q26771472Microsatellites in Pursuit of Microbial Genome Evolution
Q33930381Microsatellites reveal substantial among-population genetic differentiation and strong inbreeding in the relict fern Dryopteris aemula
Q30983782Migration and isolation during the turbulent Ponto-Caspian Pleistocene create high diversity in the crustacean Paramysis lacustris
Q50042171Mining and Development of Novel SSR Markers Using Next Generation Sequencing (NGS) Data in Plants.
Q35805394Mining microsatellite markers from public expressed sequence tags databases for the study of threatened plants
Q42023808Mitochondrial DNA variation and range expansion in western bean cutworm (Lepidoptera: Noctuidae): no evidence for a recent population bottleneck
Q57186989Molecular Forensics into the Sea: How Molecular Markers Can Help to Struggle Against Poaching and Illegal Trade in Precious Corals?
Q36007538Molecular Techniques for the Detection and Differentiation of Host and Parasitoid Species and the Implications for Fruit Fly Management
Q35897338Molecular evidence for multiple phylogenetic groups within two species of invasive spiny whiteflies and their parasitoid wasp
Q36980911Molecular evidence of polyandry in the citrus mealybug, Planococcus citri (Hemiptera: Pseudococcidae).
Q58824927Molecular forensics in the precious Mediterranean red coral, Corallium rubrum: testing DNA extraction and microsatellite genotyping using dried colonies
Q38002064Molecular tools and analytical approaches for the characterization of farm animal genetic diversity.
Q35600982More than one genotype: how common is intracolonial genetic variability in scleractinian corals?
Q46265705Morphological and genetic divergence between Agave inaequidens, A. cupreata and the domesticated A. hookeri. Analysis of their evolutionary relationships
Q34288985Multiple mating and family structure of the western tent caterpillar, Malacosoma californicum pluviale: impact on disease resistance
Q35994181Multiple-clone infections of Plasmodium vivax: definition of a panel of markers for molecular epidemiology
Q35209510Multiplexing with three-primer PCR for rapid and economical microsatellite validation
Q56449847Neither variation loss, nor change in selfing rate is associated with the worldwide invasion of Physa acuta from its native North America
Q34698830New SNPs for population genetic analysis reveal possible cryptic speciation of eastern Australian sea mullet (Mugil cephalus).
Q92896005New insights from nuclear and mitochondrial markers on the genetic diversity and structure of the Indian white shrimp Fenneropenaeus indicus among the marginal seas in the Indian Ocean
Q92999034New microsatellite markers for Xerophyta dasylirioides (Velloziaceae), an endemic species on Malagasy inselbergs
Q49662294New microsatellites revealed strong gene flow among populations of a new outbreak pest, Athetis lepigone (Möschler).
Q64111164Next-generation phylogeography of the cockle : Highly heterogeneous genetic differentiation in a lagoon species
Q34217820Next-generation phylogeography: a targeted approach for multilocus sequencing of non-model organisms
Q37413263No experimental evidence for sneaking in a west african cichlid fish with extremely long sperm
Q56331189No rest for the laurels: symbiotic invaders cause unprecedented damage to southern USA forests
Q34083757Noninvasive genetic population survey of snow leopards (Panthera uncia) in Kangchenjunga conservation area, Shey Phoksundo National Park and surrounding buffer zones of Nepal
Q35153752Noninvasive individual and species identification of jaguars (Panthera onca), pumas (Puma concolor) and ocelots (Leopardus pardalis) in Belize, Central America using cross-species microsatellites and faecal DNA.
Q41095728Novel efficient genome-wide SNP panels for the conservation of the highly endangered Iberian lynx
Q40345808Novel gene-sequence markers for isolate tracking within Monilinia fructicola lesions
Q31087947Novel microsatellite DNA markers indicate strict parthenogenesis and few genotypes in the invasive willow sawfly Nematus oligospilus.
Q46527061Novel microsatellite markers suggest the mechanism of parthenogenesis in Extatosoma tiaratum is automixis with terminal fusion
Q92728025Novel polymorphic microsatellite loci in Anisakis pegreffii and A. simplex (s. s.) (Nematoda: Anisakidae): implications for species recognition and population genetic analysis
Q57838529Novel polymorphic microsatellite markers for population genetics of the endangered Caribbean star coral, Montastraea faveolata
Q34497876Nuclear microsatellite primers for the endangered relict fir, Abies pinsapo (Pinaceae) and cross-amplification in related Mediterranean Species
Q51638365Ocean currents help explain population genetic structure.
Q44603862On the occurrence of intracolonial genotypic variability in highly clonal populations of the hydrocoral Millepora platyphylla at Moorea (French Polynesia).
Q36255641Ongoing Speciation and Gene Flow between Taxonomically Challenging Trochulus Species Complex (Gastropoda: Hygromiidae).
Q37556989PMDBase: a database for studying microsatellite DNA and marker development in plants
Q35208921Particle backtracking improves breeding subpopulation discrimination and natal-source identification in mixed populations
Q99852332Phylogeny and species delimitation of Flammulina: taxonomic status of winter mushroom in East Asia and a new European species identified using an integrated approach
Q31010755Phylogeographic breaks within Asian butternuts indicate the existence of a phytogeographic divide in East Asia
Q35229459Phylogeographic structure, demographic history and morph composition in a colour polymorphic lizard
Q46247245Phylogeography Study of the Siberian Apricot (Prunus sibirica L.) in Northern China Assessed by Chloroplast Microsatellite and DNA Makers
Q38618244Phylogeography and Ecological Niche Modeling of the Desert Iguana (Dipsosaurus dorsalis, Baird & Girard 1852) in the Baja California Peninsula.
Q57015479Phylogeography, population structure and evolution of coral-eating butterflyfishes (Family Chaetodontidae, genus Chaetodon , subgenus Corallochaetodon )
Q39632138Polymorphic heterologous microsatellite loci for population genetics studies of the white-faced ibis Plegadis chihi (Vieillot, 1817) (Pelecaniformes, Threskiornithidae).
Q40267409Polypatex: an R package for paternity exclusion in autopolyploids
Q58040974Population connectivity and the effectiveness of marine protected areas to protect vulnerable, exploited and endemic coral reef fishes at an endemic hotspot
Q111349233Population genetic characterization of the endangered dung beetle Copris tripartitus (Coleoptera: Scarabaeidae) using novel microsatellite markers
Q92967600Population genetic structure and connectivity of the seagrass Thalassia hemprichii in the Western Indian Ocean is influenced by predominant ocean currents
Q37195719Population genetic structure between Yap and Palau for the coral Acropora hyacinthus
Q35217797Population genetic structure of endangered Mongolian racerunner (Eremias argus) from the Korean Peninsula
Q56764090Population genetic structure of the round goby in Lake Michigan: implications for dispersal of invasive species
Q30866017Population genetic structure, genetic diversity, and natural history of the South American species of Nothofagus subgenus Lophozonia (Nothofagaceae) inferred from nuclear microsatellite data
Q90887574Population genetic structure, migration, and polyploidy origin of a medicinal species Gynostemma pentaphyllum (Cucurbitaceae)
Q26970819Population genetics of the Asian tiger mosquito Aedes albopictus, an invasive vector of human diseases
Q111346751Population genetics strategies to characterize long-distance dispersal of insects
Q30796613Population signatures of large-scale, long-term disjunction and small-scale, short-term habitat fragmentation in an Afromontane forest bird
Q47193824Population size and time since island isolation determine genetic diversity loss in insular frog populations
Q98159212Population size estimates based on the frequency of genetically assigned parent-offspring pairs within a subsample
Q34158386Population structure of the greenhouse whitefly, Trialeurodes vaporariorum (Westwood), an invasive species from the Americas, 60 years after invading China
Q38895618Populations genetically rifting within a complex geological system: The case of strong structure and low genetic diversity in the migratory freshwater catfish, Bagrus docmak, in East Africa
Q83462632Pulses of movement across the sea ice: population connectivity and temporal genetic structure in the arctic fox
Q45013057QDD version 3.1: a user-friendly computer program for microsatellite selection and primer design revisited: experimental validation of variables determining genotyping success rate
Q37095253Quantifying inbreeding in natural populations of hermaphroditic organisms
Q33774533Range-wide genetic connectivity of the Hawaiian monk seal and implications for translocation
Q94545520Rapid Genetic Divergence of an Invasive Species, Spartina alterniflora, in China
Q39748952Rapid development and screening of microsatellite loci for Artibeus lituratus and their utility for six related species within Phyllostomidae
Q37519703Rapid identification of thousands of copperhead snake (Agkistrodon contortrix) microsatellite loci from modest amounts of 454 shotgun genome sequence
Q35802487Reconstructing the invasion history of Heracleum persicum (Apiaceae) into Europe
Q50263698Red and white Chinook salmon: genetic divergence and mate choice
Q51591759Relatedness and genetic structure in a socially polymorphic population of the spider Anelosimus studiosus.
Q39050825Relative accuracy of three common methods of parentage analysis in natural populations
Q46251986Relative contributions of neutral and non-neutral processes to clinal variation in calyx lobe length in the series Sakawanum (Asarum: Aristolochiaceae).
Q38292161Repetitive flanking sequences challenge microsatellite marker development: a case study in the lepidopteran Melanargia galathea.
Q21132289Resilience to disturbance despite limited dispersal and self-recruitment in tropical barrel sponges: implications for conservation and management
Q36318492Rethinking the influence of hydroelectric development on gene flow in a long-lived fish, the Lake Sturgeon Acipenser fulvescens
Q39558017SNP Discovery Using Next Generation Transcriptomic Sequencing
Q30668481SSR_pipeline: a bioinformatic infrastructure for identifying microsatellites from paired-end Illumina high-throughput DNA sequencing data
Q33404429STAMP: Extensions to the STADEN sequence analysis package for high throughput interactive microsatellite marker design
Q100751420Scale-dependent effects of habitat fragmentation on the genetic diversity of Actinidia chinensis populations in China
Q34722234Searching for gene flow from cultivated to wild strawberries in Central Europe
Q46990225Seasonal variation in genetic population structure of sábalo (Prochilodus lineatus) in the Lower Uruguay River.
Q42701029Secondary contact and asymmetrical gene flow in a cosmopolitan marine fish across the Benguela upwelling zone
Q37634942Simple sequence repeat polymorphisms (SSRPs) for evaluation of molecular diversity and germplasm classification of minor crops.
Q95789144Simple sequence repeats in Neurospora crassa: distribution, polymorphism and evolutionary inference
Q45191250Skin swabbing as a new efficient DNA sampling technique in amphibians, and 14 new microsatellite markers in the alpine newt (Ichthyosaura alpestris).
Q111630329Small effective population size in microrefugia?
Q91240912Social interactions do not drive territory aggregation in a grassland songbird
Q46412320Social network structure in wintering golden-crowned sparrows is not correlated with kinship
Q35244019Sophora microphylla (Fabaceae) microsatellite markers and their utility across the genus
Q99937999Spatial capture–recapture for categorically marked populations with an application to genetic capture–recapture
Q34364104Spatial genetic structure and mitochondrial DNA phylogeography of Argentinean populations of the grasshopper Dichroplus elongatus
Q33616866Species delineation using Bayesian model-based assignment tests: a case study using Chinese toad-headed agamas (genus Phrynocephalus)
Q56417671Stable populations in unstable habitats: temporal genetic structure of the introduced ascidian Styela plicata in North Carolina
Q54949228Strong genetic differentiation in tropical seagrass Enhalus acoroides (Hydrocharitaceae) at the Indo-Malay Archipelago revealed by microsatellite DNA.
Q57265561Strong population differentiation of softshell clams (Mya arenaria) sampled across seven biogeographic marine ecoregions: possible selection and isolation by distance
Q56995387Survey and analysis of simple sequence repeats in the Laccaria bicolor genome, with development of microsatellite markers
Q35264894Temporal genetic homogeneity among shore crab (Carcinus maenas) larval events supplied to an estuarine system on the Portuguese northwest coast.
Q37252549Testing the consistency of connectivity patterns for a widely dispersing marine species.
Q55283267Testing the effects of heterozygosity on growth rate plasticity in the seaweed Gracilaria chilensis (Rhodophyta).
Q35666982The Genetic Relatedness in Groups of Joint-Nesting Taiwan Yuhinas: Low Genetic Relatedness with Preferences for Male Kin
Q46353407The Role of Microsatellites in Streptophyta Gene Evolution.
Q56750999The absence of genotypic diversity in a successful parthenogenetic invader
Q40645079The critical role of ants in the extensive dispersal of Acacia seeds revealed by genetic parentage assignment.
Q35081361The effects of island forest restoration on open habitat specialists: the endangered weevil Hadramphus spinipennis Broun and its host-plant Aciphylla dieffenbachii Kirk
Q45520203The effects of read length, quality and quantity on microsatellite discovery and primer development: from Illumina to PacBio
Q56433175The endangered species Brycon orbignyanus: genetic analysis and definition of priority areas for conservation
Q45990847The evolution of Hessian fly from the Old World to the New World: Evidence from molecular markers.
Q90640460The hidden diversity of the potato cyst nematode Globodera pallida in the south of Peru
Q34307703The impact of past introductions on an iconic and economically important species, the red deer of Scotland.
Q51181986The influence of landscape on gene flow in the eastern massasauga rattlesnake (Sistrurus c. catenatus): insight from computer simulations.
Q36754054The population biology of coccidioides: epidemiologic implications for disease outbreaks.
Q36571784The rate and spectrum of microsatellite mutation in Caenorhabditis elegans and Daphnia pulex
Q35046774The relevance of time series in molecular ecology and conservation biology
Q36062135The report of my death was an exaggeration: A review for researchers using microsatellites in the 21st century.
Q39125928The use of microsatellite markers in Neotropical studies of wild birds: a literature review
Q56565991The use of molecular tools in invasion biology: an emphasis on freshwater ecosystems
Q35567829Tracking larvae with molecular markers reveals high relatedness and early seasonal recruitment success in a partially spawning marine bivalve
Q36401131Transcriptome Analysis of Two Vicia sativa Subspecies: Mining Molecular Markers to Enhance Genomic Resources for Vetch Improvement
Q34323233Transcriptome analysis of the Trachinotus ovatus: identification of reproduction, growth and immune-related genes and microsatellite markers
Q33528293Trapped in the extinction vortex? Strong genetic effects in a declining vertebrate population
Q39123076Tree growth response along an elevational gradient: climate or genetics?
Q34634014Unisexual salamanders (genus Ambystoma) present a new reproductive mode for eukaryotes.
Q29013496Unravelling the effects of contemporary and historical range expansion on the distribution of genetic diversity in the damselfly Coenagrion scitulum
Q90311980Use of DNA Markers for Grape Phylloxera Population and Evolutionary Genetics: From RAPDs to SSRs and Beyond
Q30855709Use of genome sequence data in the design and testing of SSR markers for Phytophthora species.
Q37565725Using Next-Generation Sequencing for DNA Barcoding: Capturing Allelic Variation in ITS2.
Q34183081Vertical and horizontal photobiont transmission within populations of a lichen symbiosis.
Q36778369When homoplasy mimics hybridization: a case study of Cape hakes (Merluccius capensis and M. paradoxus).
Q35471714Where have all the tadpoles gone? Individual genetic tracking of amphibian larvae until adulthood.
Q39234436varver: a database of microsatellite variation in vertebrates