| scholarly article | Q13442814 |
| review article | Q7318358 |
| P50 | author | Lewis A. Fraser | Q47175004 |
| Simon Chi-Chin Shiu | Q47175010 | ||
| Julian A. Tanner | Q45891244 | ||
| P2093 | author name string | Andrew B Kinghorn | |
| Shaolin Lang | |||
| P2860 | cites work | Time-dependent extinction rate and species abundance in a tangled-nature model of biological evolution | Q48729262 |
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| Abundance of correctly folded RNA motifs in sequence space, calculated on computational grids | Q24813759 | ||
| 2.8 A crystal structure of the malachite green aptamer | Q27625739 | ||
| Structural basis for discriminatory recognition of Plasmodium lactate dehydrogenase by a DNA aptamer | Q27679972 | ||
| Structural basis for activity of highly efficient RNA mimics of green fluorescent protein | Q27684699 | ||
| Structure and possible function of a G-quadruplex in the long terminal repeat of the proviral HIV-1 genome | Q27710266 | ||
| All-atom empirical potential for molecular modeling and dynamics studies of proteins | Q27860468 | ||
| The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling | Q27860637 | ||
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| In vitro selection of RNA molecules that bind specific ligands | Q27861109 | ||
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| Galaxy Workflows for Web-based Bioinformatics Analysis of Aptamer High-throughput Sequencing Data | Q28595781 | ||
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| In silico modelling of directed evolution: Implications for experimental design and stepwise evolution. | Q51860397 | ||
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| The crystal and molecular structure of a hydrogen-bonded complex between 1-methylthymine and 9-methyladenine | Q57534974 | ||
| Selective Phenome Growth Adapted NK Model: A Novel Landscape to Represent Aptamer Ligand Binding | Q59142935 | ||
| AptaCluster - A Method to Cluster HT-SELEX Aptamer Pools and Lessons from its Application | Q60175393 | ||
| Pore Formation Coupled to Ion Transport through Lipid Membranes as Induced by Transmembrane Ionic Charge Imbalance: Atomistic Molecular Dynamics Study | Q61875087 | ||
| Sequence space localization in the immune system response to vaccination and disease | Q73844607 | ||
| Theory and applications of the generalized Born solvation model in macromolecular simulations | Q77381573 | ||
| Quadruplex-based molecular beacons as tunable DNA probes | Q80151687 | ||
| SELEX: just another separation? | Q81308700 | ||
| Geometric formalism for DNA quadruplex folding | Q81525622 | ||
| Structural basis for high-affinity fluorophore binding and activation by RNA Mango | Q47132440 | ||
| Towards a general theory of adaptive walks on rugged landscapes | Q47593883 | ||
| Protein-DNA docking with a coarse-grained force field | Q30529906 | ||
| Isolation of high-affinity GTP aptamers from partially structured RNA libraries | Q30843685 | ||
| AptaGUI-A Graphical User Interface for the Efficient Analysis of HT-SELEX Data | Q31004700 | ||
| Analyzing HT-SELEX data with the Galaxy Project tools--A web based bioinformatics platform for biomedical research. | Q31007883 | ||
| The mathematics of SELEX against complex targets | Q32062858 | ||
| Subtractive SELEX against two heterogeneous target samples: numerical simulations and analysis | Q33254511 | ||
| Inhibition of in vivo tumor angiogenesis and growth via systemic delivery of an angiopoietin 2-specific RNA aptamer | Q33303295 | ||
| Exploring the sequence space of a DNA aptamer using microarrays | Q33304953 | ||
| Theoretical principles of in vitro selection using combinatorial nucleic acid libraries | Q33329973 | ||
| A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes | Q33381864 | ||
| 3D-DART: a DNA structure modelling server | Q33439390 | ||
| In silico selection of RNA aptamers | Q33451579 | ||
| Monitoring genomic sequences during SELEX using high-throughput sequencing: neutral SELEX. | Q33531798 | ||
| Telomeres and telomerase: from discovery to clinical trials | Q33607376 | ||
| Enhanced functional potential of nucleic acid aptamer libraries patterned to increase secondary structure | Q33610517 | ||
| Quantitative selection of DNA aptamers through microfluidic selection and high-throughput sequencing | Q33655937 | ||
| Sequencing your genome: what does it mean? | Q33732868 | ||
| Particle display: a quantitative screening method for generating high-affinity aptamers. | Q33786340 | ||
| SELEXION. Systematic evolution of ligands by exponential enrichment with integrated optimization by non-linear analysis | Q34001832 | ||
| Molecular dynamics simulations and drug discovery | Q34061019 | ||
| Aptamer selection by high-throughput sequencing and informatic analysis | Q34093799 | ||
| Isolation and optimization of murine IL-10 receptor blocking oligonucleotide aptamers using high-throughput sequencing. | Q34204137 | ||
| Triplex DNA structures. | Q34296747 | ||
| Microfluidic approaches to rapid and efficient aptamer selection | Q34303936 | ||
| Informational complexity and functional activity of RNA structures | Q34315065 | ||
| In vitro RNA random pools are not structurally diverse: a computational analysis | Q34366408 | ||
| Rapid identification of cell-specific, internalizing RNA aptamers with bioinformatics analyses of a cell-based aptamer selection | Q34409758 | ||
| Structure clustering features on the Sfold Web server | Q34444156 | ||
| Coming of age: ten years of next-generation sequencing technologies | Q34526801 | ||
| Controlling uncertainty in aptamer selection | Q34543607 | ||
| Assessing the amount of quadruplex structures present within G₂-tract synthetic random-sequence DNA libraries | Q34745287 | ||
| Inhibition of rat corneal angiogenesis by a nuclease-resistant RNA aptamer specific for angiopoietin-2 | Q34981750 | ||
| Tracking the emergence of high affinity aptamers for rhVEGF165 during capillary electrophoresis-systematic evolution of ligands by exponential enrichment using high throughput sequencing | Q35017397 | ||
| FASTAptamer: A Bioinformatic Toolkit for High-throughput Sequence Analysis of Combinatorial Selections. | Q35161360 | ||
| Computational selection of RNA aptamer against angiopoietin-2 and experimental evaluation | Q35250485 | ||
| Large scale analysis of the mutational landscape in HT-SELEX improves aptamer discovery | Q35600644 | ||
| More DNA-Aptamers for Small Drugs: A Capture-SELEX Coupled with Surface Plasmon Resonance and High-Throughput Sequencing | Q35601850 | ||
| Single-Round Patterned DNA Library Microarray Aptamer Lead Identification | Q35657036 | ||
| Characterisation of aptamer-target interactions by branched selection and high-throughput sequencing of SELEX pools. | Q35688562 | ||
| Analysis of In Vitro Aptamer Selection Parameters | Q35830915 | ||
| AptaTRACE Elucidates RNA Sequence-Structure Motifs from Selection Trends in HT-SELEX Experiments | Q36088479 | ||
| High throughput sequencing analysis of RNA libraries reveals the influences of initial library and PCR methods on SELEX efficiency. | Q36139325 | ||
| Aptamer Selection Technology and Recent Advances | Q36256736 | ||
| Evolution of Complex Target SELEX to Identify Aptamers against Mammalian Cell-Surface Antigens | Q36266158 | ||
| Identification of a new class of exonic splicing enhancers by in vivo selection | Q36567695 | ||
| High-throughput sequence analysis reveals structural diversity and improved potency among RNA inhibitors of HIV reverse transcriptase | Q36580881 | ||
| A novel protocol for three-dimensional structure prediction of RNA-protein complexes | Q36878829 | ||
| Molecular dynamics simulations of nucleic acid-protein complexes. | Q37087008 | ||
| A computationally designed DNA aptamer template with specific binding to phosphatidylserine | Q37403863 | ||
| Selection of DNA Aptamers for Ovarian Cancer Biomarker CA125 Using One-Pot SELEX and High-Throughput Sequencing | Q37661390 | ||
| RNA and DNA complexes with hemin [Fe(III) heme] are efficient peroxidases and peroxygenases: how do they do it and what does it mean? | Q37940577 | ||
| Complex SELEX against target mixture: stochastic computer model, simulation, and analysis | Q38300116 | ||
| Affinity improvement of a VEGF aptamer by in silico maturation for a sensitive VEGF-detection system. | Q38319303 | ||
| Antiproliferative activity of G-rich oligonucleotides correlates with protein binding | Q38320934 | ||
| Combinatorial selection of high affinity RNA ligands to live African trypanosomes | Q38326105 | ||
| DNA-enhanced peroxidase activity of a DNA-aptamer-hemin complex | Q38333033 | ||
| Entropic fragment-based approach to aptamer design | Q38335871 | ||
| Analysis of aptamer sequence activity relationships | Q38347807 | ||
| Array-based evolution of DNA aptamers allows modelling of an explicit sequence-fitness landscape | Q38358691 | ||
| Advancements in Aptamer Discovery Technologies | Q39488994 | ||
| Aptamer Affinity Maturation by Resampling and Microarray Selection. | Q39653640 | ||
| Global similarities in nucleotide base composition among disparate functional classes of single-stranded RNA imply adaptive evolutionary convergence | Q41779444 | ||
| RazerS--fast read mapping with sensitivity control | Q42566501 | ||
| Convergent evolution to an aptamer observed in small populations on DNA microarrays | Q42920087 | ||
| Enzyme-free unlabeled DNA logic circuits based on toehold-mediated strand displacement and split G-quadruplex enhanced fluorescence. | Q44051105 | ||
| P275 | copyright license | Creative Commons Attribution | Q6905323 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P433 | issue | 12 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | bioinformatics | Q128570 |
| nucleotide | Q28745 | ||
| computational biology | Q177005 | ||
| nucleotide aptamers | Q49849144 | ||
| biomedical investigative technique | Q66648976 | ||
| P577 | publication date | 2017-11-24 | |
| P1433 | published in | International Journal of Molecular Sciences | Q3153277 |
| P1476 | title | Aptamer Bioinformatics | |
| P478 | volume | 18 |
| Q90460561 | A Bottom-Up Approach for Developing Aptasensors for Abused Drugs: Biosensors in Forensics |
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| Q90296614 | In Silico Selection Approach to Develop DNA Aptamers for a Stem-like Cell Subpopulation of Non-small Lung Cancer Adenocarcinoma Cell Line A549 |
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| Q58700124 | Molecular Modeling Applied to Nucleic Acid-Based Molecule Development |
| Q91973459 | Predicting the Most Stable Aptamer/Target Molecule Complex Configuration Using a Stochastic-Tunnelling Basin-Hopping Discrete Molecular Dynamics Method: A Novel Global Minimum Search Method for a Biomolecule Complex |
| Q51150222 | Refining the Results of a Classical SELEX Experiment by Expanding the Sequence Data Set of an Aptamer Pool Selected for Protein A. |
| Q52362632 | Selection and Characterization of a DNA Aptamer Specifically Targeting Human HECT Ubiquitin Ligase WWP1. |
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