Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes

scientific article published in January 2018

Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes is …
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scholarly articleQ13442814

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P356DOI10.1099/IJSEM.0.002516
P698PubMed publication ID29292687

P50authorAharon OrenQ21390825
Milton S. da CostaQ37840564
Henrik ChristensenQ41783082
David R. ArahalQ55234021
Alejandro P RooneyQ56777918
Sofie De MeyerQ57237785
Antonio VentosaQ61125696
Xue-Wei XuQ95981946
P2093author name stringJongsik Chun
Martha E Trujillo
Hana Yi
P2860cites workOrthoANI: An improved algorithm and software for calculating average nucleotide identityQ45340509
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectprokaryotesQ19081
P304page(s)461-466
P577publication date2018-01-01
P1433published inInternational Journal of Systematic and Evolutionary MicrobiologyQ3511931
P1476titleProposed minimal standards for the use of genome data for the taxonomy of prokaryotes
P478volume68

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cites work (P2860)
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Q55439878Availability of Nanopore sequences in the genome taxonomy for Vibrionaceae systematics: Rumoiensis clade species as a test case.
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Q118110250Bacillus cabrialesii subsp. cabrialesii subsp. nov. and Bacillus cabrialesii subsp. tritici subsp. nov., plant growth-promoting bacteria and biological control agents isolated from wheat (Triticum turgidum subsp. durum) in the Yaqui Valley, Mexico
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Q92810023Bioactivities and genome insights of a thermotolerant antibiotics-producing Streptomyces sp. TM32 reveal its potentials for novel drug discovery
Q110951041Biocontrol potential and antifungal mechanism of a novel Streptomyces sichuanensis against Fusarium oxysporum f. sp. cubense tropical race 4 in vitro and in vivo
Q110697275Bradyrhizobium altum sp. nov., Bradyrhizobium oropedii sp. nov. and Bradyrhizobium acaciae sp. nov. from South Africa show locally restricted and pantropical nodA phylogeographic patterns
Q89980994Bradyrhizobium ivorense sp. nov. as a potential local bioinoculant for Cajanus cajan cultures in Côte d'Ivoire
Q98224697Burkholderia cepacia Complex Taxon K: Where to Split?
Q111742019Caldalkalibacillus salinus sp. nov., isolated from a salt lake in Xinjiang, northwest China
Q116673377Canibacter zhuwentaonis sp. nov. and Canibacter zhoujuaniae sp. nov., isolated from Marmota himalayana
Q110951335Caproicibacterium lactatifermentans sp. nov., isolated from pit clay used for the production of Chinese strong aroma-type liquor
Q116816609Cellulomonas dongxiuzhuiae sp. nov., Cellulomonas wangleii sp. nov. and Cellulomonas fengjieae sp. nov., isolated from the intestinal contents of Marmota himalayana
Q111741768Characterization of Alistipes montrealensis sp. nov., Isolated from Human Feces of a Patient with Metastatic Melanoma Treated with Immune Checkpoint Inhibitors
Q92454953Characterization of Salinivibrio socompensis sp. nov., A New Halophilic Bacterium Isolated from the High-Altitude Hypersaline Lake Socompa, Argentina
Q118110243Chelativorans petroleitrophicus sp. nov., a paraffin oil-degrading bacterium isolated from a mixture of oil-based drill cuttings and paddy soil
Q116816792Chryseobacterium oryzae sp. nov. and Chryseobacterium suipulveris sp. nov., isolated from Andong sikhye and pigpen dust, respectively
Q110697027Chryseobacterium panacisoli sp. nov., isolated from ginseng-cultivation soil with ginsenoside-converting activity
Q111741918Chryseobacterium tagetis sp. nov., a plant growth promoting bacterium with an antimicrobial activity isolated from the roots of medicinal plant (Tagetes patula)
Q116672482Chryseolinea lacunae sp. nov. and Piscinibacter lacus sp. nov. Isolated from Artificial Pond Water
Q116498247Clostridium caldaquaticum sp. nov., a thermophilic bacterium isolated from a hot spring sediment
Q116816991Clostridium gelidum sp. nov., a psychrotrophic anaerobic bacterium isolated from rice field soil
Q111742001Clostridium weizhouense sp. nov., an anaerobic bacterium isolated from activated sludge of petroleum wastewater
Q114765286Cohnella herbarum sp. nov., isolated from wild grass fermentation broth
Q111741687Comamonas fluminis sp. nov., isolated from the Han River, Republic of Korea
Q64268780Community Composition and Metabolic Potential of Endophytic Actinobacteria From Coastal Salt Marsh Plants in Jiangsu, China
Q93048526Comparative Genomic Analysis of the 2016 Vibrio cholerae Outbreak in South Korea
Q90050569Comparative Genomic and Phylogenomic Analyses Clarify Relationships Within and Between Bacillus cereus and Bacillus thuringiensis: Proposal for the Recognition of Two Bacillus thuringiensis Genomovars
Q89143720Comparative Genomics of the Genus Lactobacillus Reveals Robust Phylogroups That Provide the Basis for Reclassification
Q93175329Comparative genome analysis of arsenic reducing, hydrocarbon metabolizing groundwater bacterium Achromobacter sp. KAs 3-5T explains its competitive edge for survival in aquifer environment
Q110694389Comparative genome characterization of Echinicola marina sp. nov., isolated from deep-sea sediment provide insight into carotenoid biosynthetic gene cluster evolution
Q59329947Comparative genomics analysis to differentiate metabolic and virulence gene potential in gastric versus enterohepatic Helicobacter species
Q54976928Comparative genomics reveals phylogenetic distribution patterns of secondary metabolites in Amycolatopsis species.
Q90090135Complete Genome Sequence of Burkholderia sp. Strain THE68, a Bacterial Symbiont Isolated from Midgut Crypts of the Seed Bug Togo hemipterus
Q53822205Complete Genome Sequence of Marinobacter flavimaris LMG 23834T, Which Is Potentially Useful in Bioremediation.
Q110696448Croceicoccus gelatinilyticus sp. nov., isolated from a tidal flat sediment
Q52620734Cultivation and genomics of the first freshwater SAR11 (LD12) isolate.
Q118110242Dasania phycosphaerae sp. nov., isolated from phytoplankton sample from the south coast of the Republic of Korea
Q99550938Defining Genomic and Predicted Metabolic Features of the Acetobacterium Genus
Q111741838Delineation of Paraburkholderia tuberum sensu stricto and description of Paraburkholderia podalyriae sp. nov. nodulating the South African legume Podalyria calyptrata
Q89756946Delineation of a subgroup of the genus Paraburkholderia, including P. terrae DSM 17804T, P. hospita DSM 17164T and four soil-isolated fungiphiles, reveals remarkable genomic and ecological features - Proposal for the definition of a P. hospita speci
Q84966843Description and complete genome sequences of Bradyrhizobium symbiodeficiens sp. nov., a non-symbiotic bacterium associated with legumes native to Canada
Q110693613Description and genome analysis of Microvirga antarctica sp. nov., a novel pink-pigmented psychrotolerant bacterium isolated from Antarctic soil
Q99711462Description of Chloramphenicol Resistant Kineococcus rubinsiae sp. nov. Isolated From a Spacecraft Assembly Facility
Q116817139Description of Deefgea piscis sp. nov., and Deefgea tanakiae sp. nov., isolated from the gut of Korean indigenous fish
Q116672477Description of Microbacterium neungamense sp. nov. isolated from a hot spring
Q111742079Description of Polaribacter batillariae sp. nov., Polaribacter cellanae sp. nov., and Polaribacter pectinis sp. nov., novel bacteria isolated from the gut of three types of South Korean shellfish
Q116673271Description of Pseudogemmobacter faecipullorum sp. nov., isolated from poultry manure
Q116816760Description of five novel thermophilic species of the genus Thermus: Thermus hydrothermalis sp. nov., Thermus neutrinimicus sp. nov., Thermus thalpophilus sp. nov., Thermus albus sp. nov., and Thermus altitudinis sp. nov., isolated from hot spring…
Q59161747Description of three new Peptoniphilus species cultured in the vaginal fluid of a woman diagnosed with bacterial vaginosis: Peptoniphilus pacaensis sp. nov., Peptoniphilus raoultii sp. nov., and Peptoniphilus vaginalis sp. nov
Q111741984Desulfovulcanus ferrireducens gen. nov., sp. nov., a thermophilic autotrophic iron and sulfate-reducing bacterium from subseafloor basalt that grows on akaganéite and lepidocrocite minerals
Q110696477Dickeya colocasiae sp. nov. isolated from wetland taro, Colocasia esculentum
Q110951385Diplocloster agilis gen. nov., sp. nov. and Diplocloster modestus sp. nov., two novel anaerobic fermentative members of Lachnospiraceae isolated from human faeces
Q96135626Diversity within species: interpreting strains in microbiomes
Q90402081Domestication of the novel alcohologenic acetogen Clostridium sp. AWRP: from isolation to characterization for syngas fermentation
Q116816756Dongia deserti sp. nov., Isolated from the Gurbantunggut Desert Soil
Q91808118Draft Genome Sequence of Bradyrhizobium elkanii Strain SEMIA 938, Used in Commercial Inoculants for Lupinus spp. in Brazil
Q90689300Draft Genome Sequence of Desulfurobacterium thermolithotrophum Strain HR11, a Novel Thermophilic Autotrophic Subspecies from a Deep-Sea Hydrothermal Vent
Q92732030Draft Genome Sequence of FK506-Producing Streptomyces tsukubensis Strain VKM Ac-2618D
Q92646127Draft Genome Sequence of Raoultella ornithinolytica P079F W, Isolated from the Feces of a Preterm Infant
Q59801347Draft Genome Sequence of a Fermenting Bacterium, "" 4-11, from a Low-Temperature Petroleum Reservoir in Russia
Q92000738Draft Genome Sequence of a Fermenting Bacterium, Soehngenia sp. Strain 1933P, Isolated from a Petroleum Reservoir in Azerbaijan
Q59791224Draft Genome Sequence of a Sulfate-Reducing Bacterium, "" 435, Isolated from a High-Temperature Gas Field in Russia
Q99564679Draft Genome Sequences of 13 Plant-Associated Actinobacteria of the Family Microbacteriaceae
Q92646135Draft Genome Sequences of Citrobacter freundii and Citrobacter murliniae Strains Isolated from the Feces of Preterm Infants
Q52591124Draft Genome Sequences of New Genomospecies "Candidatus Pectobacterium maceratum" Strains, Which Cause Soft Rot in Plants.
Q92351942Draft Genome Sequences of Two Thermophilic Moorella sp. Strains, Isolated from an Acidic Hot Spring in Japan
Q90537428Draft genome analysis of the endophyte, Bacillus toyonensis COPE52, a blueberry (Vaccinium spp. var. Biloxi) growth-promoting bacterium
Q91837569Draft genome sequence of Bacillus megaterium TRQ8, a plant growth-promoting bacterium isolated from wheat (Triticum turgidum subsp. durum) rhizosphere in the Yaqui Valley, Mexico
Q58578643Draft genome sequence of subsp. strain Fito_F321, an endophyte microorganism from with biocontrol potential
Q116817087Duganella dendranthematis sp. nov. and Massilia forsythiae sp. nov., isolated from flowers
Q118110249Dyadobacter pollutisoli sp. nov., isolated from plastic waste landfill soil
Q116816912Dyella sedimenti sp. nov., Isolated from the Sediment of a Winery
Q93083762Enterobacter hormaechei subsp. hoffmannii subsp. nov., Enterobacter hormaechei subsp. xiangfangensis comb. nov., Enterobacter roggenkampii sp. nov., and Enterobacter muelleri is a later heterotypic synonym of Enterobacter asburiae based on computati
Q116673360Enterovibrio paralichthyis sp. nov., isolated from the gut of an olive flounder Paralichthys olivaceus
Q110696341Erythrobacter rubeus sp. nov., a carotenoid-producing alphaproteobacterium isolated from coastal seawater
Q118110258Ferranicluibacter rubi gen. nov., sp. nov., a new member of family Rhizobiaceae isolated from stems of elmleaf blackberry (Rubus ulmifolius Schott) in Northwest Spain
Q110697025Flagellatimonas centrodinii gen. nov., sp. nov., a novel member of the family Nevskiaceae isolated from toxin-producing dinoflagellate Centrodinium punctatum
Q111742030Flaviflexus equikiangi sp. nov. isolated from faeces of Equus kiang (Tibetan wild ass) and carrying a class 1 integron gene cassette in its genome
Q116498305Flavihumibacter fluminis sp. nov., a novel thermotolerant bacterium isolated from river silt
Q111741695Flavobacterium ammonificans sp. nov. and Flavobacterium ammoniigenes sp. nov., ammonifying bacteria isolated from surface river water
Q116672628Flavobacterium potami sp. nov., a multi-metal resistance genes harbouring bacterium isolated from shallow river silt
Q110696467Flavobacterium proteolyticum sp. nov., isolated from aquaculture water
Q111741701Flavobacterium selenitireducens sp. nov., isolated from rhizosphere soil of ancient mulberry
Q116816995Flavobacterium soyae sp. nov., isolated from the rhizosphere of soya bean
Q84964741Fluviispira multicolorata gen. nov., sp. nov. and Silvanigrella paludirubra sp. nov., isolated from freshwater habitats
Q110696413Fulvivirga lutea sp. nov., a marine bacterium isolated from seawater
Q90193138Genome Insights into the Novel Species Microvirga brassicacearum, a Rapeseed Endophyte with Biotechnological Potential
Q61444067Genome Sequence of " Viridilinea halotolerans" Chok-6, Isolated from a Saline Sulfide-Rich Spring
Q92000845Genome Sequences of Green- and Brown-Colored Strains of Chlorobium phaeovibrioides with Gas Vesicles
Q92526060Genome Sequences of a Green-Colored Chlorobium phaeovibrioides Strain Containing Two Plasmids and a Closely Related Plasmid-Free Brown-Colored Strain
Q60920714Genome Sequencing and Comparative Transcriptomics Provide a Holistic View of 4-Nitrophenol Degradation and Concurrent Fatty Acid Catabolism by sp. Strain BUPNP1
Q60947132Genome Sequencing and Pan-Genome Analysis of 23 Strains Reveal Unexpected Diversity, With Particular Plasticity of Predatory Gene Sets
Q116816598Genome analysis of Pollutimonas subterranea gen. nov., sp. nov. and Pollutimonas nitritireducens sp. nov., isolated from nitrate- and radionuclide-contaminated groundwater, and transfer of several Pusillimonas species into three new genera…
Q57159488Genome analysis, metabolic potential and predatory capabilities of sp. nov
Q110696385Genome insights into the pharmaceutical and plant growth promoting features of the novel species Nocardia alni sp. nov
Q59161753Genome sequence and description of Gracilibacillus timonensis sp. nov. strain Marseille-P2481T , a moderate halophilic bacterium isolated from the human gut microflora.
Q58573013Genome-Based Analysis Reveals the Taxonomy and Diversity of the Family
Q58719422Genome-Based Taxonomic Classification of the Phylum
Q84965191Genome-based analyses reveal a synonymy among Halorubrum distributum Zvyagintseva and Tarasov 1989; Oren and Ventosa 1996, Halorubrum terrestre Ventosa et al. 2004, Halorubrum arcis Xu et al. 2007 and Halorubrum litoreum Cui et al. 2007. Emended d...
Q118110223Genome-based classification of Pedobacter polysacchareus sp. nov., isolated from Antarctic soil producing exopolysaccharide
Q111740925Genome-based classification of Streptomyces pinistramenti sp. nov., a novel actinomycete isolated from a pine forest soil in Poland with a focus on its biotechnological and ecological properties
Q111742035Genome-based, phenotypic and chemotaxonomic classification of Faecalibacterium strains: proposal of three novel species Faecalibacterium duncaniae sp. nov., Faecalibacterium hattorii sp. nov. and Faecalibacterium gallinarum sp. nov.
Q92632021Genomes from bacteria associated with the canine oral cavity: A test case for automated genome-based taxonomic assignment
Q64108260Genomic Characterization of Isolated From Shellfish: Novel Insight Into Antibiotic Resistance and Virulence Determinants
Q91808193Genomic Insight into Three Marine Micromonospora sp. Strains from the Gulf of California
Q98224722Genomic Variation and Arsenic Tolerance Emerged as Niche Specific Adaptations by Different Exiguobacterium Strains Isolated From the Extreme Salar de Huasco Environment in Chilean - Altiplano
Q58769734Genomic and Functional Characterization of Environmental Strains of SDS-Degrading spp., Providing a Source of New Sulfatases
Q116817124Genomic and physiological analysis of C50 carotenoid-producing novel Halorubrum ruber sp. nov.
Q116672734Genomic and physiological characterization of Novosphingobium terrae sp. nov., an alphaproteobacterium isolated from Cerrado soil containing a mega-sized chromid
Q92316306Genomic characterization of a potentially novel Streptococcus species producing exopolysaccharide
Q116672630Genomic insight into Myroides oncorhynchi sp. nov., a new member of the Myroides genus, isolated from the internal organ of rainbow trout (Oncorhynchus mykiss)
Q96225414Genomic insights into the phylogeny of Bacillus strains and elucidation of their secondary metabolic potential
Q110693605Genomics and simulated laboratory studies reveal Thermococcus sp. 101C5 as a novel hyperthermophilic archaeon possessing a specialized metabolic arsenal for enhanced oil recovery
Q52584429Genotypic and Lipid Analyses of Strains From the Archaeal Genus Halorubrum Reveal Insights Into Their Taxonomy, Divergence, and Population Structure.
Q111741929Geobacter benzoatilyticus sp. nov., a novel benzoate-oxidizing, iron-reducing bacterium isolated from petroleum contaminated soil
Q90680985Geomonas oryzae gen. nov., sp. nov., Geomonas edaphica sp. nov., Geomonas ferrireducens sp. nov., Geomonas terrae sp. nov., Four Ferric-Reducing Bacteria Isolated From Paddy Soil, and Reclassification of Three Species of the Genus Geobacter as Membe
Q64888872Global Biogeographic Distribution Patterns of Thermoacidophilic Verrucomicrobia Methanotrophs Suggest Allopatric Evolution.
Q60909682Global genomic similarity and core genome sequence diversity of the genus as a toolkit to identify closely related bacterial species in complex environments
Q110697069Gracilibacillus suaedae sp. nov., an indole acetic acid-producing endophyte isolated from a root of Suaeda salsa
Q89552962Haloglomus irregulare gen. nov., sp. nov., a New Halophilic Archaeon Isolated from a Marine Saltern
Q110696471Haloprofundus salilacus sp. nov., Haloprofundus halobius sp. nov. and Haloprofundus salinisoli sp. nov.: three extremely halophilic archaea isolated from salt lake and saline soil
Q111742021Hanamia caeni gen. nov., sp. nov., a Member of the Family Chitinophagaceae Isolated from Activated Sludge in Korea
Q111741651Hanstruepera crassostreae He et al. 2018 is a later heterotypic synonym of Pseudobizionia ponticola Park et al. 2018 and transfer of Pseudobizionia ponticola to the genus Hanstruepera as Hanstruepera ponticola comb. nov
Q58719859Identification and Classification for the Group
Q89879343Identification of Species and Subspecies of Lactic Acid Bacteria Present in Spanish Cheeses Type "Torta" by MALDI-TOF MS and pheS gene Analyses
Q116816910Ignatzschineria rhizosphaerae sp. nov. Isolated from Rhizosphere Soil of the Halophyte Kalidium cuspidatum
Q90270797Improved Metagenomic Taxonomic Profiling Using a Curated Core Gene-Based Bacterial Database Reveals Unrecognized Species in the Genus Streptococcus
Q64230986In silico genome analysis reveals the metabolic versatility and biotechnology potential of a halotorelant phthalic acid esters degrading Gordonia alkanivorans strain YC-RL2
Q89489979Into the wild: new yeast genomes from natural environments and new tools for their analysis
Q92575991Isolates from Colonic Spirochetosis in Humans Show High Genomic Divergence and Potential Pathogenic Features but Are Not Detected Using Standard Primers for the Human Microbiota
Q92637660Isolation and Identification of Microvirga thermotolerans HR1, a Novel Thermo-Tolerant Bacterium, and Comparative Genomics among Microvirga Species
Q89985335Isolation of Chryseobacterium siluri sp. nov., from liver of diseased catfish (Silurus asotus)
Q90716698Jejubacter calystegiae gen. nov., sp. nov., moderately halophilic, a new member of the family Enterobacteriaceae, isolated from beach morning glory
Q110951321Kushneria phosphatilytica sp. nov., a phosphate-solubilizing bacterium isolated from a solar saltern
Q110951396Lactobacillus huangpiensis sp. nov. and Lactobacillus laiwuensis sp. nov., isolated from the gut of honeybee (Apis mellifera)
Q116498303Legionella maioricensis sp. nov., a new species isolated from the hot water distribution systems of a hospital and a shopping center during routine sampling
Q116816606Limibaculum sediminis sp. nov., isolated from mangrove sediment
Q118110245Limimaricola litoreus sp. nov., isolated from intertidal sand of the Yellow Sea
Q84962400Limnoglobus roseus gen. nov., sp. nov., a novel freshwater planctomycete with a giant genome from the family Gemmataceae
Q112739927Living in a bottle: Bacteria from sediment-associated Mediterranean waste and potential growth on polyethylene terephthalate
Q111741752Luteimonas saliphila sp. nov. and Luteimonas salinisoli sp. nov., two novel strains isolated from saline soils
Q111741957Lysobacter antarcticus sp. nov., an SUF-system-containing bacterium from Antarctic coastal sediment
Q111741716Lysobacter ciconiae sp. nov., and Lysobacter avium sp. nov., isolated from the faeces of an Oriental stork
Q110951400Macrococcus armenti sp. nov., a novel bacterium isolated from the skin and nasal cavities of healthy pigs and calves
Q116783893Marinigracilibium pacificum gen. nov., sp. nov., a starch-degrading bacterium isolated from tropical western Pacific
Q116498308Maritalea mediterranea sp. nov., isolated from marine plastic residues
Q90011525Methylobacterium sp. 2A Is a Plant Growth-Promoting Rhizobacteria That Has the Potential to Improve Potato Crop Yield Under Adverse Conditions
Q110696481Methylocystis silviterrae sp.nov., a high-affinity methanotrophic bacterium isolated from the boreal forest soil
Q116816870Microbacterium kunmingensis sp. nov., an attached bacterium of Microcystis aeruginosa
Q118110288Microbulbifer zhoushanensis sp. nov., Microbulbifer sediminum sp. nov. and Microbulbifer guangxiensis sp. nov., three marine bacteria isolated from a tidal flat
Q110696453Micromonospora humida sp. nov., exhibiting antimicrobial potential, isolated from riverside soil
Q110696408Mongoliitalea daihaiensis sp. nov., isolated from Daihai Lake in Inner Mongolia
Q116498306Moraxella nasicaprae sp. nov., Isolated from a Goat with Respiratory Disease
Q116816994Moraxella nasovis sp. nov., isolated from a sheep with respiratory disease
Q110951387Mycoplasma miroungirhinis sp. nov. and Mycoplasma miroungigenitalium sp. nov., isolated from northern elephant seals (Mirounga angustirostris), Mycoplasma phocoenae sp. nov., isolated from harbour porpoise (Phocoena phocoena), and Mycoplasma…
Q110696317Natronococcus pandeyae sp. nov., a Novel Haloarchaeon from Sambhar Salt Lake
Q94461613Network-directed efficient isolation of previously uncultivated Chloroflexi and related bacteria in hot spring microbial mats
Q116816786New members of the family Eggerthellaceae isolated from Marmota himalayana: Xiamenia xianingshaonis gen. nov., sp. nov., from intestinal contents, and Berryella wangjianweii sp. nov., from trachea
Q110696298Nocardia acididurans sp. nov., an acid-tolerant actinobacterium isolated from bio-fertilizer of Musa species
Q110693628Nocardioides lacusdianchii sp. nov., an attached bacterium of Microcystis aeruginosa
Q64096202Nosocomial bloodstream infection and the emerging carbapenem-resistant pathogen Ralstonia insidiosa
Q116817117Oceanobacillus alkalisoli sp. nov., an alkaliphilic bacterium isolated from saline-alkaline soil
Q110951044Oceanobacter mangrovi Sp. Nov., a Novel Poly-β-hydroxybutyrate Accumulating Bacterium Isolated from Mangrove Sediment
Q110696476Ornithinimicrobium laminariae sp. nov., isolated from the kelp Laminaria japonica
Q111741991Pacificimonas pallium sp. nov., an Isolated Bacterium from the Mantle of Pacific Oyster Crassostrea gigas in Germany, and Prediction of One-Carbon Metabolism
Q116817093Paenibacillus alkalitolerans sp. nov., a bacterium isolated from a salt lake of Turpan City in Xinjiang Province, north-west China
Q111741776Paenibacillus artemisiicola sp. nov. and Paenibacillus lignilyticus sp. nov., two new endophytic bacterial species isolated from plant roots
Q118110280Paenibacillus dendrobii sp. nov., an indole-3-acetic acid-producing endophytic bacterium isolated from Dendrobium nobile
Q116817084Paenibacillus mellifer sp. nov., isolated from gut of the honey bee Apis mellifera
Q114765717Paenibacillus oleatilyticus sp. nov., isolated from soil
Q116816603Paenibacillus sabuli sp. nov., isolated from the South China Sea
Q118110237Paenibacillus soyae sp. nov., isolated from the rhizosphere of soya bean
Q110697026Paenihalocynthiibacter styelae gen. nov., sp. nov., isolated from stalked sea squirt Styela clava
Q60912918Pangenome of Serratia marcescens strains from nosocomial and environmental origins reveals different populations and the links between them
Q111741718Paraburkholderia gardini sp. nov. and Paraburkholderia saeva sp. nov.: Novel aromatic compound degrading bacteria isolated from garden and forest soil samples
Q118110253Parapedobacter tibetensis sp. nov., isolated from shore soil of saline lake in Tibet of China and its genome mining of secondary metabolite
Q111742072Parashewanella hymeniacidonis sp. nov., isolated from marine sponge (Hymeniacidon sinapium)
Q114765399Parasphingorhabdus cellanae sp. nov., isolated from the gut of a Korean limpet, Cellana toreuma
Q116817109Parvicella tangerina gen. nov., sp. nov. (Parvicellaceae fam. nov., Flavobacteriales), first cultured representative of the marine clade UBA10066, and Lysobacter luteus sp. nov., from activated sludge of a seawater-processing wastewater treatment…
Q118110281Parvularcula maris sp. nov., an algicidal bacterium isolated from seawater
Q111741827Pedobacter fastidiosus sp. nov., isolated from glacial habitats of maritime Antarctica
Q114765404Pedomonas mirosovicensis gen. nov., sp. nov., a bacterium isolated from soil with the aid of Micrococcus luteus culture supernatant containing resuscitation-promoting factor
Q118110329Pelosinus baikalensis sp. nov., an Iron-Reducing Bacterium Isolated from a Cold Freshwater Lake
Q99712469Phylogenetic insights into the diversity of Chryseobacterium species
Q60947094Phylogenomic Analysis of the Gammaproteobacterial Methanotrophs (Order ) Calls for the Reclassification of Members at the Genus and Species Levels
Q98177592Phylogenomic Classification and Biosynthetic Potential of the Fossil Fuel-Biodesulfurizing Rhodococcus Strain IGTS8
Q116816561Phylogenomic analysis of a metagenome-assembled genome indicates a new taxon of an anoxygenic phototroph bacterium in the family Chromatiaceae and the proposal of “Candidatus Thioaporhodococcus” gen. nov
Q116498234Phylogenomic analysis of the genus Alcanivorax: proposal for division of this genus into the emended genus Alcanivorax and two novel genera Alloalcanivorax gen. nov. and Isoalcanivorax gen. nov.
Q111741841Phylogenomic and comparative analyses support the reclassification of several Komagataeibacter species as novel members of the Novacetimonas gen. nov. and bring new insights into the evolution of cellulose synthase genes
Q118110129Phylogenomics and molecular marker-based analyses of the order Nevskiales: Proposal for the creation of Steroidobacterales ord. nov. and Peristeroidobacter gen. nov
Q58569082Phylogenomics picks out the par excellence markers for species phylogeny in the genus
Q110951391Pinisolibacter aquiterrae sp. nov., a novel aromatic hydrocarbon-degrading bacterium isolated from benzene-, and xylene-degrading enrichment cultures, and emended description of the genus Pinisolibacter
Q110696441Prevotella herbatica sp. nov., a plant polysaccharide-decomposing anaerobic bacterium isolated from a methanogenic reactor
Q111741907Prevotella lacticifex sp. nov., isolated from the rumen of cows
Q118110229Proposed minimal standards for description of methanogenic archaea
Q110696451Pseudaestuariivita rosea sp. nov., isolated from Acmaea sp., a marine mollusk
Q110697017Pseudoalteromonas ostreae sp. nov., a new bacterial species harboured by the flat oyster Ostrea edulis
Q116816564Pseudomonas aegrilactucae sp. nov. and Pseudomonas morbosilactucae sp. nov., pathogens causing bacterial rot of lettuce in Japan
Q111742015Pseudomonas germanica sp. nov., isolated from Iris germanica rhizomes
Q110697023Pseudomonas guryensis sp. nov. and Pseudomonas ullengensis sp. nov., isolated from soil
Q116673384Pseudomonas paralcaligenes sp. nov., isolated from a hospitalized patient
Q111742017Pseudomonas rustica sp. nov., isolated from bulk tank raw milk at a German dairy farm
Q111741727Pseudomonas tumuqii sp. nov., isolated from greenhouse soil
Q110951043Pseudonocardia humida sp. nov., an Actinomycete Isolated from Mangrove Soil Showing Distinct Distribution Pattern of Biosynthetic Gene Clusters
Q114765411Pseudovibrio flavus sp. nov. isolated from the sea sponge Verongula gigantea
Q116816608Psychroflexus curvus sp. nov., Psychroflexus longus sp. nov. and Psychroflexus montanilacus sp. nov., isolated from salt lakes on the Tibetan Plateau
Q111741839Pusillimonas faecipullorum sp. nov., isolated from the poultry manure
Q116783903Rahnella sikkimica sp. nov., a novel cold-tolerant bacterium isolated from the glacier of Sikkim Himalaya with plant growth-promoting properties
Q116673367Ralstonia wenshanensis sp. nov., a novel bacterium isolated from a tobacco field in Yunnan, China
Q110697019Reclassification of four subspecies in the genus Streptomyces to Streptomyces rubradiris sp. nov., Streptomyces asoensis sp. nov., Streptomyces fructofermentans sp. nov. and Streptomyces ossamyceticus sp. nov.
Q99550943Reclassification of the Taxonomic Framework of Orders Cellvibrionales, Oceanospirillales, Pseudomonadales, and Alteromonadales in Class Gammaproteobacteria through Phylogenomic Tree Analysis
Q57490908Revisiting the Taxonomic Status of the Biomedically and Industrially Important Genus , Using a Phylogenomic Approach
Q58764829Revisiting the Taxonomy of the Genus : Getting Order From the Chaos
Q116816891Rhizobium alarense sp. nov. and Rhizobium halophilum sp. nov. isolated from the nodule and rhizosphere of Lotus japonicus
Q111741993Rhizobium cremeum sp. nov., isolated from sewage and capable of acquisition of heavy metal and aromatic compounds resistance genes
Q111742074Rhizobium croatiense sp. nov. and Rhizobium redzepovicii sp. nov., two new species isolated from nodules of Phaseolus vulgaris in Croatia
Q111742043Rhizobium setariae sp. nov., an Indole-3-Acetic Acid-Producing Bacterium Isolated from Green Foxtail, Setaria viridis
Q84965382Robertkochia solimangrovi sp. nov., isolated from mangrove soil, and emended description of the genus Robertkochia
Q110693607Roseitranquillus sediminis gen. nov., sp. nov. a novel genus and species of the family Rhodobacteraceae, isolated from sediment of an Arctic fjord
Q118110260Roseobacter insulae sp. nov. and Loktanella gaetbuli sp. nov., isolated from tidal flats in the Yellow Sea in Korea
Q118110267Roseomonas fluvialis sp. nov., an aerobic bacteriochlorophyll a-containing freshwater bacterium isolated from river epilithic biofilm
Q96683651Safety Assessment of a Nham Starter Culture Lactobacillus plantarum BCC9546 via Whole-genome Analysis
Q97071808Scientific Opinion on the safety and efficacy of Aviax 5% (semduramicin sodium) for chickens for fattening
Q116817115Sediminibacillus dalangtanensis sp. nov., a moderate halophile isolated from hypersaline sediments of the Qaidam Basin in Northwest China
Q90782031Serial horizontal transfer of vitamin-biosynthetic genes enables the establishment of new nutritional symbionts in aphids' di-symbiotic systems
Q111741644Shewanella jiangmenensis sp. nov., isolated from aquaculture water
Q118110241Shewanella septentrionalis sp. nov. and Shewanella holmiensis sp. nov., isolated from Baltic Sea water and sediments
Q118110066Shewanella subflava sp. nov., a novel multi-resistant bacterium, isolated from the estuary of the Fenhe River into the Yellow River
Q111741892Shinella oryzae sp. nov., a novel zearalenone-resistant bacterium isolated from rice paddy soil
Q110951382Sneathiella sedimenti sp. nov., isolated from marine sediment
Q116673389Solicola gregarius gen. nov., sp. nov., a soil actinobacterium isolated after enhanced cultivation with Micrococcus luteus culture supernatant
Q110951042Sphingobacterium bovistauri sp. nov., Isolated from the Faeces of Bos Taurus
Q110951378Sphingobacterium faecale sp. nov., a 1-aminocyclopropane-1-carboxylate deaminase producing bacterium isolated from camel faeces
Q110697031Sphingobacterium micropteri sp. nov. and Sphingobacterium litopenaei sp. nov., isolated from aquaculture water
Q110696378Sphingomonas arenae sp. nov., isolated from desert soil
Q111741805Sphingomonas radiodurans sp. nov., a novel radiation-resistant bacterium isolated from the north slope of Mount Everest
Q84965085Sphingomonas solaris sp. nov., isolated from a solar panel in Boston, Massachusetts
Q111741704Spirosoma rhododendri sp. nov., isolated from a flower of royal azalea (Rhododendron schlippenbachii)
Q110951071Spongiibacter pelagi sp. nov., a marine gammaproteobacterium isolated from coastal seawater
Q111741871Spongiibacter thalassae sp. nov., a marine gammaproteobacterium isolated from seawater
Q111741890Sporosarcina jiandibaonis sp. nov., isolated from saline soil
Q111742034Staphylococcus taiwanensis sp. nov., isolated from human blood
Q118110050Streptomonospora mangrovi sp. nov., isolated from mangrove soil showing similar metabolic capabilities, but distinct secondary metabolites profiles
Q90091989Streptomyces acidicola sp. nov., isolated from a peat swamp forest in Thailand
Q116817113Streptomyces akebiae sp. nov., a novel actinomycete isolated from rhizosphere soil of Akebia trifoliate
Q118110295Streptomyces beihaiensis sp. nov., a chitin-degrading actinobacterium, isolated from shrimp pond soil
Q116498232Streptomyces guryensis sp. nov. exhibiting antimicrobial activity, isolated from riverside soil
Q111741751Streptomyces liliifuscus sp. nov and an anti-ginger plague agent Streptomyces liliiviolaceus sp. nov, two novel species isolated from soil of Lilium lancifolium
Q111742003Streptomyces montanisoli sp. nov., exhibiting antimicrobial activity, isolated from mountain soil around a decaying tree
Q116672935Streptomyces pacificus sp. nov., a novel spongiicolazolicin-producing actinomycete isolated from a coastal sediment
Q118110284Streptomyces phytophilus sp. nov., an endophytic actinobacterium with biosynthesis potential as an antibiotic producer
Q116817118Streptomyces plumbidurans sp. nov., a Pb2+-tolerant actinomycete
Q116498300Streptomyces rhizoryzae sp. nov., isolated from paddy rhizosphere soil and formal proposal to reclassify Streptomyces albulus as a later heterotypic synonym of Streptomyces noursei
Q116816600Sulfurimonas marina sp. nov., an obligately chemolithoautotrophic, sulphur-oxidizing bacterium isolated from a deep-sea sediment sample from the South China Sea
Q111741886Sutcliffiella deserti sp. nov., isolated from desert soil
Q110951383Szabonella alba gen. nov., sp. nov., a motile alkaliphilic bacterium of the family Rhodobacteraceae isolated from a soda lake
Q64053789TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy
Q114765393Tenacibaculum aquimarinum sp. nov., isolated from a marine alga and seawater
Q110951401Tenebrionibacter intestinalis gen. nov., sp. nov., a member of a novel genus of the family Enterobacteriaceae, isolated from the gut of the plastic-eating mealworm Tenebrio molitor L.
Q116498235Terrisporobacter hibernicus sp. nov., isolated from bovine faeces in Northern Ireland
Q60916388The Complete Genome and Physiological Analysis of the Eurythermal Firmicute Exiguobacterium chiriqhucha Strain RW2 Isolated From a Freshwater Microbialite, Widely Adaptable to Broad Thermal, pH, and Salinity Ranges
Q97883368The Discovery of New Antilisterial Proteins From Paenibacillus polymyxa Kp10 via Genome Mining and Mass Spectrometry
Q52714816The Global Catalogue of Microorganisms 10K type strain sequencing project: closing the genomic gaps for the validly published prokaryotic and fungi species.
Q118110236Thermococcus argininiproducens sp. nov., an arginine biosynthesis archaeal species isolated from the Central Indian Ocean ridge
Q116673413Thermospira aquatica gen. nov., sp. nov., a novel thermophilic spirochete isolated from a Tunisian hot spring, and description of the novel family Thermospiraceae.
Q111742056Two new Rhizobiales species isolated from root nodules of common sainfoin ( Onobrychis viciifolia ) show different plant colonization strategies
Q87917247UBCG: Up-to-date bacterial core gene set and pipeline for phylogenomic tree reconstruction
Q97072015Use of next-generation sequencing in microbial risk assessment
Q59794109Using Core Genome Alignments To Assign Bacterial Species
Q110697064Vibrio ulleungensis sp. nov., isolated from Mytilus coruscus
Q110697039Vineibacter terrae gen. nov., sp. nov., an ammonium-assimilating and nitrate-reducing bacterium isolated from vineyard soil
Q92525611Whole Genome Sequencing and Comparative Genomics of Two Nematicidal Bacillus Strains Reveals a Wide Range of Possible Virulence Factors
Q90290421Whole-Genome Sequencing Redefines Shewanella Taxonomy
Q91663604Whole-genome comparison between the type strain of Halobacterium salinarum (DSM 3754T ) and the laboratory strains R1 and NRC-1
Q98613792Widespread energy limitation to life in global subseafloor sediments
Q110697068Xanthobacter dioxanivorans sp. nov., a 1,4-dioxane-degrading bacterium
Q91989890Xanthomonas citri subsp. citri and Xanthomonas arboricola pv. pruni: Comparative analysis of two pathogens producing similar symptoms in different host plants
Q110694375Xenorhabdus lircayensis sp. nov., the symbiotic bacterium associated with the entomopathogenic nematode Steinernema unicornum
Q116673387Zeimonas sediminis sp. nov., isolated from mangrove sediment
Q116816536Zobellella iuensis sp. nov., an aerobic denitrifying bacterium isolated from activated sludge