| P50 | author | Andras Fiser | Q61479290 |
| P2093 | author name string | Nelson Gil | |
| P2860 | cites work | Protein 3D structure computed from evolutionary sequence variation | Q21090966 |
| | Sequence co-evolution gives 3D contacts and structures of protein complexes | Q21128770 |
| | Disentangling direct from indirect co-evolution of residues in protein alignments | Q21563484 |
| | The crystal structure of human hypoxanthine-guanine phosphoribosyltransferase with bound GMP | Q24315730 |
| | Gapped BLAST and PSI-BLAST: a new generation of protein database search programs | Q24545170 |
| | A comprehensive comparison of multiple sequence alignment programs | Q24548825 |
| | Amino acid substitution matrices from protein blocks | Q24563220 |
| | Direct-coupling analysis of residue coevolution captures native contacts across many protein families | Q24627074 |
| | Automatic assessment of alignment quality | Q24812989 |
| | Correlated mutations and residue contacts in proteins | Q25891592 |
| | Functional Classification of Immune Regulatory Proteins | Q27677346 |
| | Inference of macromolecular assemblies from crystalline state | Q27860457 |
| | Multiple sequence threading: an analysis of alignment quality and stability | Q48048364 |
| | Mutual information without the influence of phylogeny or entropy dramatically improves residue contact prediction | Q48372137 |
| | Predicting functionally important residues from sequence conservation. | Q50686129 |
| | Information Theoretical Analysis of Multivariate Correlation | Q56454253 |
| | A study on protein sequence alignment quality | Q57209034 |
| | PconsC: combination of direct information methods and alignments improves contact prediction | Q58002726 |
| | AltAVisT: comparing alternative multiple sequence alignments | Q72991742 |
| | BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark | Q80934686 |
| | TCS: a new multiple sequence alignment reliability measure to estimate alignment accuracy and improve phylogenetic tree reconstruction | Q28237309 |
| | Protein sectors: evolutionary units of three-dimensional structure | Q28256199 |
| | Evolutionarily conserved pathways of energetic connectivity in protein families | Q29615037 |
| | Automated analysis of interatomic contacts in proteins | Q29616410 |
| | Correlations among amino acid sites in bHLH protein domains: an information theoretic analysis | Q30011142 |
| | Evolutionary predictions of binding surfaces and interactions. | Q30329608 |
| | Assessing the utility of coevolution-based residue-residue contact predictions in a sequence- and structure-rich era. | Q30353377 |
| | SSpro/ACCpro 5: almost perfect prediction of protein secondary structure and relative solvent accessibility using profiles, machine learning and structural similarity. | Q30362846 |
| | MetaPSICOV: combining coevolution methods for accurate prediction of contacts and long range hydrogen bonding in proteins. | Q30368992 |
| | Correction for phylogeny, small number of observations and data redundancy improves the identification of coevolving amino acid pairs using mutual information. | Q30375462 |
| | PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments | Q30409743 |
| | Protein sequence alignment analysis by local covariation: coevolution statistics detect benchmark alignment errors | Q30418264 |
| | Protein structure based prediction of catalytic residues | Q30427488 |
| | MUMMALS: multiple sequence alignment improved by using hidden Markov models with local structural information | Q33255503 |
| | A statistical score for assessing the quality of multiple sequence alignments | Q33262518 |
| | Identifying and seeing beyond multiple sequence alignment errors using intra-molecular protein covariation | Q33623719 |
| | Improving the alignment quality of consistency based aligners with an evaluation function using synonymous protein words | Q34098116 |
| | A method to predict functional residues in proteins | Q34310572 |
| | Information theory applications for biological sequence analysis | Q34372764 |
| | Improving contact prediction along three dimensions | Q34442613 |
| | Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2. | Q34487825 |
| | Protein interface classification by evolutionary analysis | Q34520325 |
| | The iRMSD: a local measure of sequence alignment accuracy using structural information | Q34551819 |
| | Improved contact predictions using the recognition of protein like contact patterns | Q35400135 |
| | Conservation analysis of sequences flanking the testis-determining gene Sry in 17 mammalian species | Q36127481 |
| | Covariation of mutations in the V3 loop of human immunodeficiency virus type 1 envelope protein: an information theoretic analysis | Q36454330 |
| | BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions | Q36491539 |
| | Part mutual information for quantifying direct associations in networks | Q37173037 |
| | Functional clustering of immunoglobulin superfamily proteins with protein-protein interaction information calibrated hidden Markov model sequence profiles | Q38483251 |
| | Multiple sequence alignment modeling: methods and applications | Q38651602 |
| | Comparing co-evolution methods and their application to template-free protein structure prediction. | Q38974044 |
| | Domain-based and family-specific sequence identity thresholds increase the levels of reliable protein function transfer | Q40011178 |
| | Amino acid sequence analysis of the annexin super-gene family of proteins | Q42613060 |
| | CCMpred--fast and precise prediction of protein residue-residue contacts from correlated mutations | Q42949275 |
| | Correlation of co-ordinated amino acid substitutions with function in viruses related to tobacco mosaic virus | Q44014609 |
| | Predicting disulfide bond connectivity in proteins by correlated mutations analysis | Q46802200 |
| P407 | language of work or name | English | Q1860 |
| P577 | publication date | 2017-12-01 | |
| P1433 | published in | Bioinformatics | Q4914910 |
| P1476 | title | Identifying Functionally Informative Evolutionary Sequence Profiles | |