Structural diversity of the nucleosome

scientific article published on 17 November 2017

Structural diversity of the nucleosome is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1093/JB/MVX081
P698PubMed publication ID29161414

P50authorHitoshi KurumizakaQ42546438
P2093author name stringMasako Koyama
P2860cites workDistinct distribution of ectopically expressed histone variants H2A.Bbd and MacroH2A in open and closed chromatin domainsQ21560754
Archaeal nucleosomesQ22066190
Crystal structure of the nucleosome core particle at 2.8 A resolutionQ22122355
Histone variant H2A.Bbd is associated with active transcription and mRNA processing in human cellsQ24293198
Structural basis of instability of the nucleosome containing a testis-specific histone variant, human H3TQ24314852
Alteration of the nucleosomal DNA path in the crystal structure of a human nucleosome core particleQ24529557
Structure of the yeast nucleosome core particle reveals fundamental changes in internucleosome interactionsQ24535791
The structure of (CENP-A-H4)(2) reveals physical features that mark centromeresQ24599635
Histone H2A/H2B dimer exchange by ATP-dependent chromatin remodeling activitiesQ24611081
A genomic code for nucleosome positioningQ24650238
Every amino acid matters: essential contributions of histone variants to mammalian development and diseaseQ27008522
Two arginine residues suppress the flexibility of nucleosomal DNA in the canonical nucleosome coreQ27311349
Crystal structures of recombinant histones HMfA and HMfB from the hyperthermophilic archaeon Methanothermus fervidusQ27627350
Asymmetries in the nucleosome core particle at 2.5 A resolutionQ27628657
Crystal structure of a nucleosome core particle containing the variant histone H2A.ZQ27628748
Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolutionQ27639217
Structure of the Drosophila nucleosome core particle highlights evolutionary constraints on the H2A-H2B histone dimerQ27648881
The nucleosomal core histone octamer at 3.1 A resolution: a tripartite protein assembly and a left-handed superhelixQ27655585
Structure of RCC1 chromatin factor bound to the nucleosome core particleQ27664183
Crystal structures of nucleosome core particles containing the '601' strong positioning sequenceQ27664208
Crystal structure of the human centromeric nucleosome containing CENP-AQ27670750
Structural Basis of Silencing: Sir3 BAH Domain in Complex with a Nucleosome at 3.0 A ResolutionQ27675642
The mechanics behind DNA sequence-dependent properties of the nucleosomeQ27678233
A Conserved Mechanism for Centromeric Nucleosome Recognition by Centromere Protein CENP-CQ27678426
Contribution of histone N-terminal tails to the structure and stability of nucleosomesQ27680641
Structural polymorphism in the L1 loop regions of human H2A.Z.1 and H2A.Z.2Q27680769
Structure and function of human histone H3.Y nucleosomeQ27704313
The structural basis of modified nucleosome recognition by 53BP1Q27722410
NMR structure of HMfB from the hyperthermophile, Methanothermus fervidus, confirms that this archaeal protein is a histoneQ27732536
The Flexible Ends of CENP-A Nucleosome Are Required for Mitotic FidelityQ28115680
Metabolism and regulation of canonical histone mRNAs: life without a poly(A) tailQ28297786
Testis-specific expression of a novel human H3 histone geneQ28300716
Tissue-specific expression of histone H3 variants diversified after species separationQ28607519
The biology of chromatin remodeling complexesQ29620581
A unified phylogeny-based nomenclature for histone variantsQ30426389
Structural basis of a nucleosome containing histone H2A.B/H2A.Bbd that transiently associates with reorganized chromatinQ30559515
HMf, a DNA-binding protein isolated from the hyperthermophilic archaeon Methanothermus fervidus, is most closely related to histonesQ33718187
Kinetics of core histones in living human cells: little exchange of H3 and H4 and some rapid exchange of H2B.Q33953079
The structure of DNA in the nucleosome coreQ33965908
Histone variants in metazoan developmentQ34149623
Spheroid chromatin units (v bodies).Q34202546
Human SWI/SNF generates abundant, structurally altered dinucleosomes on polynucleosomal templatesQ34230856
The octamer is the major form of CENP-A nucleosomes at human centromeresQ34342975
Rapid spontaneous accessibility of nucleosomal DNA.Q34373646
Diversity in the organization of centromeric chromatin.Q34475675
Electron microscopic and biochemical evidence that chromatin structure is a repeating unitQ34513851
Biophysical characterization of the centromere-specific nucleosome from budding yeastQ34537134
Archaeal histones and the origin of the histone foldQ34570189
Structure and Scm3-mediated assembly of budding yeast centromeric nucleosomesQ35038924
Replacement of histone H3 with CENP-A directs global nucleosome array condensation and loosening of nucleosome superhelical terminiQ35289159
Phylogenomics of the nucleosomeQ35570334
Ultrastructure of transcriptionally competent chromatinQ35892144
A new link between transcriptional initiation and pre-mRNA splicing: The RNA binding histone variant H2A.B.Q36289449
Histone H2A variants in nucleosomes and chromatin: more or less stable?Q36435083
X-ray structure of the MMTV-A nucleosome coreQ36563237
Nucleosome formation with the testis-specific histone H3 variant, H3t, by human nucleosome assembly proteins in vitroQ36633206
Topography of the histone octamer surface: repeating structural motifs utilized in the docking of nucleosomal DNAQ36657548
Structural basis for histone H2B deubiquitination by the SAGA DUB module.Q36892380
Determinants of nucleosome positioningQ37086686
Analysis of individual remodeled nucleosomes reveals decreased histone-DNA contacts created by hSWI/SNF.Q37384729
Histone contributions to the structure of DNA in the nucleosomeQ37567894
Organizing the genome with H2A histone variantsQ38072728
Nucleosome sliding mechanisms: new twists in a looped history.Q38134612
The interplay between nucleoid organization and transcription in archaeal genomesQ38461461
Structure of nucleosome core particles of chromatinQ38560180
Structure of histone-based chromatin in Archaea.Q38629808
Mislocalization of the centromeric histone variant CenH3/CENP-A in human cells depends on the chaperone DAXX.Q39023712
The nucleosomal surface as a docking station for Kaposi's sarcoma herpesvirus LANA.Q40318272
Crystal structure of the PRC1 ubiquitylation module bound to the nucleosomeQ42001356
Histone synthesis and deposition in the G1 and S phases of hepatoma tissue culture cellsQ42528156
An alternative beads-on-a-string chromatin architecture in Thermococcus kodakarensis.Q42542100
Nucleosomes can invade DNA territories occupied by their neighborsQ43136918
The histone tails of the nucleosomeQ48018656
Crystal structure of the overlapping dinucleosome composed of hexasome and octasome.Q48276556
Crystal Structure and Characterization of Novel Human Histone H3 Variants, H3.6, H3.7, and H3.8.Q48323715
Testis-Specific Histone Variant H3t Gene Is Essential for Entry into Spermatogenesis.Q51039050
Archaeal histone distribution is associated with archaeal genome base composition.Q51252001
Nucleosome remodeling induced by RNA polymerase II: loss of the H2A/H2B dimer during transcription.Q52545774
CENP-A-containing nucleosomes: easier disassembly versus exclusive centromeric localization.Q53550799
Structure of the nucleosome core particle at 7 Å resolutionQ56337256
Eukaryotic RNA polymerase II binds to nucleosome cores from transcribed genesQ59079465
P577publication date2017-11-17
P1433published inJournal of BiochemistryQ6294839
P1476titleStructural diversity of the nucleosome

Reverse relations

cites work (P2860)
Q92598534Biochemical analysis of nucleosome targeting by Tn5 transposase
Q90570504Cancer-associated mutations of histones H2B, H3.1 and H2A.Z.1 affect the structure and stability of the nucleosome
Q49178684Cell Type-Specific Survey of Epigenetic Modifications by Tandem Chromatin Immunoprecipitation Sequencing.
Q90019116Elucidating the influence of linker histone variants on chromatosome dynamics and energetics
Q64120104Evolution of Genomic Base Composition: From Single Cell Microbes to Multicellular Animals
Q89263288Histone H2A variants confer specific properties to nucleosomes and impact on chromatin accessibility
Q64912029Nuclear formation induced by DNA-conjugated beads in living fertilised mouse egg.
Q97549686Nucleosome binding by the pioneer transcription factor OCT4
Q98771670Structural Paradigms in the Recognition of the Nucleosome Core Particle by Histone Lysine Methyltransferases
Q64067625Structural and biochemical analyses of the nuclear pore complex component ELYS identify residues responsible for nucleosome binding
Q93081239Targeting DNA Replication Stress and DNA Double-Strand Break Repair for Optimizing SCLC Treatment
Q89731961The Role of Extracellular DNA and Histones in Ischaemia-Reperfusion Injury of the Myocardium
Q53069071The Vast Complexity of the Epigenetic Landscape during Neurodevelopment: An Open Frame to Understanding Brain Function.

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