N-terminomics reveals control of Arabidopsis seed storage proteins and proteases by the Arg/N-end rule pathway

scientific article published on 23 November 2017

N-terminomics reveals control of Arabidopsis seed storage proteins and proteases by the Arg/N-end rule pathway is …
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scholarly articleQ13442814

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P356DOI10.1111/NPH.14909
P932PMC publication ID5947142
P698PubMed publication ID29168982

P50authorFrederica L TheodoulouQ56439256
Hongtao ZhangQ57448665
Lucy GannonQ86849807
Kirsty HassallQ89547706
Michael J DeeryQ114416636
Daniel J GibbsQ40931932
Michael J HoldsworthQ40932036
P2093author name stringKathryn S Lilley
Renier A L van der Hoorn
P2860cites workComparative large scale characterization of plant versus mammal proteins reveals similar and idiosyncratic N-α-acetylation featuresQ28256849
In vivo half-life of a protein is a function of its amino-terminal residueQ28287702
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The N-end rule pathway controls multiple functions during Arabidopsis shoot and leaf developmentQ33347443
N-terminal Proteomics Assisted Profiling of the Unexplored Translation Initiation Landscape in Arabidopsis thalianaQ33771026
N-terminal acetylation of cellular proteins creates specific degradation signalsQ34095411
Isotopic labeling of terminal amines in complex samples identifies protein N-termini and protease cleavage productsQ34102556
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Subclassification and biochemical analysis of plant papain-like cysteine proteases displays subfamily-specific characteristics.Q34174553
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The N-end rule pathway and regulation by proteolysisQ34189152
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Set-point control of RD21 protease activity by AtSerpin1 controls cell death in ArabidopsisQ34327158
Annotating N termini for the human proteome project: N termini and Nα-acetylation status differentiate stable cleaved protein species from degradation remnants in the human erythrocyte proteomeQ34405628
The paracaspase MALT1 cleaves HOIL1 reducing linear ubiquitination by LUBAC to dampen lymphocyte NF-κB signallingQ34500164
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The AtCathB3 gene, encoding a cathepsin B-like protease, is expressed during germination of Arabidopsis thaliana and transcriptionally repressed by the basic leucine zipper protein GBF1.Q35112197
Water-soluble chlorophyll protein is involved in herbivore resistance activation during greening of Arabidopsis thaliana.Q35740296
Downregulation of N-terminal acetylation triggers ABA-mediated drought responses in ArabidopsisQ35932997
PRT1 of Arabidopsis thaliana encodes a component of the plant N-end rule pathwayQ36163989
Hypoxia response in Arabidopsis roots infected by Plasmodiophora brassicae supports the development of clubroot.Q36190266
Quantitative proteomics analysis of the Arg/N-end rule pathway of targeted degradation in Arabidopsis rootsQ36406825
N-terminal protein processing: a comparative proteogenomic analysisQ36508107
An Arabidopsis mutant able to green after extended dark periods shows decreased transcripts of seed protein genes and altered sensitivity to abscisic acid.Q36958034
The N-end rule pathway promotes seed germination and establishment through removal of ABA sensitivity in ArabidopsisQ37114248
Molecular networks regulating Arabidopsis seed maturation, after-ripening, dormancy and germinationQ37142259
Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis.Q37394009
Regulation of seed germination and seedling growth by an Arabidopsis phytocystatin isoform, AtCYS6Q37397866
Dynamic proteomics emphasizes the importance of selective mRNA translation and protein turnover during Arabidopsis seed germination.Q37428838
Dormancy-specific imprinting underlies maternal inheritance of seed dormancy in Arabidopsis thaliana.Q37592373
Natural substrates of plant proteases: how can protease degradomics extend our knowledge?Q37946960
N- and C-terminal degradomics: new approaches to reveal biological roles for plant proteases from substrate identificationQ37949002
Seed storage oil catabolism: a story of give and take.Q38003784
New role for an old rule: N-end rule-mediated degradation of ethylene responsive factor proteins governs low oxygen response in plants(F).Q38060892
Methionine salvage and S-adenosylmethionine: essential links between sulfur, ethylene and polyamine biosynthesis.Q38093712
Gene expression regulation in photomorphogenesis from the perspective of the central dogmaQ38208060
The eukaryotic N-end rule pathway: conserved mechanisms and diverse functionsQ38215843
N-terminomics and proteogenomics, getting off to a good startQ38239267
Plant cysteine oxidases control the oxygen-dependent branch of the N-end-rule pathway.Q38351785
Group VII Ethylene Response Factors Coordinate Oxygen and Nitric Oxide Signal Transduction and Stress Responses in PlantsQ38461635
Nitric oxide sensing in plants is mediated by proteolytic control of group VII ERF transcription factors.Q38552244
Light-Mediated Hormonal Regulation of Plant Growth and DevelopmentQ38746446
From start to finish: amino-terminal protein modifications as degradation signals in plantsQ38903505
Serpin1 and WSCP differentially regulate the activity of the cysteine protease RD21 during plant development in Arabidopsis thalianaQ38971054
The Arabidopsis RING E3 ubiquitin ligase AtAIRP3/LOG2 participates in positive regulation of high-salt and drought stress responsesQ39136781
Homeostatic response to hypoxia is regulated by the N-end rule pathway in plantsQ39349661
Storage reserve mobilisation and seedling establishment in ArabidopsisQ39932327
Oxygen sensing coordinates photomorphogenesis to facilitate seedling survival.Q40931852
Analysis of storage proteins in normal and aborted seeds from embryo-lethal mutants of Arabidopsis thalianaQ41345403
The N-end rule pathway regulates pathogen responses in plantsQ41508285
Inhibition of cathepsin B by caspase-3 inhibitors blocks programmed cell death in Arabidopsis.Q41517657
An N-end rule pathway that recognizes proline and destroys gluconeogenic enzymesQ42083762
Enhanced waterlogging tolerance in barley by manipulation of expression of the N-end rule pathway E3 ligase PROTEOLYSIS6.Q42373143
Functional redundancy in the Arabidopsis Cathepsin B gene family contributes to basal defence, the hypersensitive response and senescence.Q42453886
Phosphorylation of the 12 S globulin cruciferin in wild-type and abi1-1 mutant Arabidopsis thaliana (thale cress) seedsQ42612698
Redundant proteolytic mechanisms process seed storage proteins in the absence of seed-type members of the vacuolar processing enzyme family of cysteine proteasesQ42687330
A delayed leaf senescence mutant is defective in arginyl-tRNA:protein arginyltransferase, a component of the N-end rule pathway in ArabidopsisQ44169645
PRT1 of Arabidopsis Is a Ubiquitin Protein Ligase of the Plant N-End Rule Pathway with Specificity for Aromatic Amino-Terminal ResiduesQ44613154
Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.Q45059167
Minitags for small molecules: detecting targets of reactive small molecules in living plant tissues using 'click chemistry'.Q46373670
The Arabidopsis metacaspase9 degradomeQ46663845
Subfamily-Specific Fluorescent Probes for Cysteine Proteases Display Dynamic Protease Activities during Seed Germination.Q46718691
The N-end rule pathway as a nitric oxide sensor controlling the levels of multiple regulatorsQ46742633
Universal stress protein HRU1 mediates ROS homeostasis under anoxiaQ46792222
Selective one-step extraction of Arabidopsis thaliana seed oleosins using organic solventsQ46926287
Protein Degradation Rate in Arabidopsis thaliana Leaf Growth and Development.Q48048617
Oxygen sensing in plants is mediated by an N-end rule pathway for protein destabilization.Q48055047
The low oxygen, oxidative and osmotic stress responses synergistically act through the ethylene response factor VII genes RAP2.12, RAP2.2 and RAP2.3.Q48205756
The greening after extended darkness1 is an N-end rule pathway mutant with high tolerance to submergence and starvation.Q51372093
TAILS N-Terminomics and Proteomics Show Protein Degradation Dominates over Proteolytic Processing by Cathepsins in Pancreatic Tumors.Q51603662
PRT6/At5g02310 encodes an Arabidopsis ubiquitin ligase of the N-end rule pathway with arginine specificity and is not the CER3 locus.Q51983108
Proteomic and transcriptomic analysis of Arabidopsis seeds: molecular evidence for successive processing of seed proteins and its implication in the stress response to sulfur nutrition.Q52003768
Arabidopsis ABA INSENSITIVE4 regulates lipid mobilization in the embryo and reveals repression of seed germination by the endosperm.Q52012364
Spatio-temporal patterning of arginyl-tRNA protein transferase (ATE) contributes to gametophytic development in a moss.Q53324942
Enhanced identification of peptides lacking basic residues by LC-ESI-MS/MS analysis of singly charged peptides.Q54336303
P4510describes a project that usesImageJQ1659584
P433issue3
P407language of work or nameEnglishQ1860
P921main subjectSeed Storage ProteinsQ78191214
P304page(s)1106-1126
P577publication date2017-11-23
P1433published inNew PhytologistQ13548580
P1476titleN-terminomics reveals control of Arabidopsis seed storage proteins and proteases by the Arg/N-end rule pathway
P478volume218

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cites work (P2860)
Q98293217A simple and efficient Agrobacterium-mediated transient expression system to dissect molecular processes in Brassica rapa and Brassica napus
Q93133698Ethylene-mediated nitric oxide depletion pre-adapts plants to hypoxia stress
Q57472690Genetic interactions between ABA signalling and the Arg/N-end rule pathway during Arabidopsis seedling establishment
Q64057502New beginnings and new ends - Methods for large-scale characterization of protein termini and their use in plant biology
Q99720213Nitric Oxide Function During Oxygen Deprivation In Physiological And Stress Processes
Q92051628Nitric oxide molecular targets: reprogramming plant development upon stress
Q92347408The Arabidopsis thaliana N-recognin E3 ligase PROTEOLYSIS1 influences the immune response
Q92663537Unwinding BRAHMA Functions in Plants

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