Artificial intelligence in neurodegenerative disease research: use of IBM Watson to identify additional RNA-binding proteins altered in amyotrophic lateral sclerosis

scientific article published on 13 November 2017

Artificial intelligence in neurodegenerative disease research: use of IBM Watson to identify additional RNA-binding proteins altered in amyotrophic lateral sclerosis is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1007/S00401-017-1785-8
P8608Fatcat IDrelease_5fxttlo43bgtbgd37h5u5zrvqm
P932PMC publication ID5773659
P698PubMed publication ID29134320

P50authorAlix LacosteQ62066722
Rita SattlerQ67207325
Robert BowserQ89843147
P2093author name stringScott Spangler
Nadine Bakkar
Ileana Lorenzini
Elenee Argentinis
Kyle Sponaugle
Philip Ferrante
Tina Kovalik
P2860cites workInteraction between the shuttling mRNA export factor Gle1 and the nucleoporin hCG1: a conserved mechanism in the export of Hsp70 mRNA.Q24530613
Higher order arrangement of the eukaryotic nuclear bodiesQ24536097
Evaluating the role of the FUS/TLS-related gene EWSR1 in amyotrophic lateral sclerosisQ24605104
Distinct structural features of caprin-1 mediate its interaction with G3BP-1 and its induction of phosphorylation of eukaryotic translation initiation factor 2alpha, entry to cytoplasmic stress granules, and selective interaction with a subset of mRQ24681390
IBM Watson: How Cognitive Computing Can Be Applied to Big Data Challenges in Life Sciences ResearchQ26748818
State of play in amyotrophic lateral sclerosis geneticsQ26864816
The Spinal Muscular Atrophy Disease Protein SMN Is Linked to the Golgi NetworkQ27329644
ALS-linked mutations in ubiquilin-2 or hnRNPA1 reduce interaction between ubiquilin-2 and hnRNPA1Q28115018
Proto-oncoprotein TLS/FUS is associated to the nuclear matrix and complexed with splicing factors PTB, SRm160, and SR proteinsQ28208722
Specific interaction of Smn, the spinal muscular atrophy determining gene product, with hnRNP-R and gry-rbp/hnRNP-Q: a role for Smn in RNA processing in motor axons?Q28214361
Mutations in the Matrin 3 gene cause familial amyotrophic lateral sclerosisQ28237200
Familial Amyotrophic Lateral SclerosisQ54158931
SMN1 gene, but not SMN2, is a risk factor for sporadic ALSQ58152626
A census of human RNA-binding proteinsQ58283908
p62 positive, TDP-43 negative, neuronal cytoplasmic and intranuclear inclusions in the cerebellum and hippocampus define the pathology of C9orf72-linked FTLD and MND/ALSQ58477808
Nuclear TDP-43 causes neuronal toxicity by escaping from the inhibitory regulation by hnRNPsQ85925919
Large-scale meta-analysis of genome-wide association data identifies six new risk loci for Parkinson's diseaseQ28244731
NEK1 variants confer susceptibility to amyotrophic lateral sclerosisQ28277378
C9orf72 nucleotide repeat structures initiate molecular cascades of disease.Q33715387
ALS-associated mutations in TDP-43 increase its stability and promote TDP-43 complexes with FUS/TLS.Q34068067
Cerebellar integrity in the amyotrophic lateral sclerosis-frontotemporal dementia continuumQ34075618
Fragile Mental Retardation Protein Interacts with the RNA-Binding Protein Caprin1 in Neuronal RiboNucleoProtein ComplexesQ34318418
Deleterious mutations in the essential mRNA metabolism factor, hGle1, in amyotrophic lateral sclerosisQ35063153
Transcript and protein expression decoupling reveals RNA binding proteins and miRNAs as potential modulators of human aging.Q35222558
Unraveling the cerebellar cortex: cytology and cellular physiology of large-sized interneurons in the granular layerQ35667795
Antisense RNA foci in the motor neurons of C9ORF72-ALS patients are associated with TDP-43 proteinopathy.Q35746397
The RNA-binding motif 45 (RBM45) protein accumulates in inclusion bodies in amyotrophic lateral sclerosis (ALS) and frontotemporal lobar degeneration with TDP-43 inclusions (FTLD-TDP) patients.Q36319626
Hyperactive somatostatin interneurons contribute to excitotoxicity in neurodegenerative disorders.Q36739537
Distinct brain transcriptome profiles in C9orf72-associated and sporadic ALS.Q36795394
Comparative interactomics analysis of different ALS-associated proteins identifies converging molecular pathwaysQ37099358
Genetics of amyotrophic lateral sclerosis: an update.Q37153922
Variants in HNRNPH2 on the X Chromosome Are Associated with a Neurodevelopmental Disorder in FemalesQ37231343
Delivery of AAV-IGF-1 to the CNS extends survival in ALS mice through modification of aberrant glial cell activityQ37331730
Hexanucleotide repeats in ALS/FTD form length-dependent RNA foci, sequester RNA binding proteins, and are neurotoxicQ37503127
The genetics and neuropathology of amyotrophic lateral sclerosisQ38035744
Pathogenic determinants and mechanisms of ALS/FTD linked to hexanucleotide repeat expansions in the C9orf72 geneQ38952327
Decoding ALS: from genes to mechanism.Q39004348
Disease Mechanisms of C9ORF72 Repeat ExpansionsQ39107075
The C9ORF72 GGGGCC expansion forms RNA G-quadruplex inclusions and sequesters hnRNP H to disrupt splicing in ALS brains.Q39396328
Global analysis of TDP-43 interacting proteins reveals strong association with RNA splicing and translation machinery.Q39761567
Global brain atrophy and corticospinal tract alterations in ALS, as investigated by voxel-based morphometry of 3-D MRI.Q40368684
Subnuclear targeting of the RNA-binding motif protein RBM6 to splicing speckles and nascent transcriptsQ42818077
Distribution of GABAAReceptor mRNA in the Motor Cortex of ALS PatientsQ44629514
hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutationsQ44742682
Cortical selective vulnerability in motor neuron disease: a morphometric study.Q44886501
Spinal inhibitory interneuron pathology follows motor neuron degeneration independent of glial mutant superoxide dismutase 1 expression in SOD1-ALS mice.Q45923964
TIA1 Mutations in Amyotrophic Lateral Sclerosis and Frontotemporal Dementia Promote Phase Separation and Alter Stress Granule DynamicsQ47939995
Pathological TDP-43 distinguishes sporadic amyotrophic lateral sclerosis from amyotrophic lateral sclerosis with SOD1 mutations.Q48183466
Detection of a novel frameshift mutation and regions with homozygosis within ARHGEF28 gene in familial amyotrophic lateral sclerosisQ48226607
GABA(A)-receptor mRNA expression in the prefrontal and temporal cortex of ALS patientsQ48408651
Calcium-binding proteins in primate cerebellumQ48474190
Immunohistochemical study on the distribution of phosphorylated extracellular signal-regulated kinase (ERK) in the central nervous system of SOD1G93A transgenic miceQ48833773
Analysis of hnRNPA1, A2/B1, and A3 genes in patients with amyotrophic lateral sclerosis.Q50857769
Cerebellar neuronal loss in amyotrophic lateral sclerosis cases with ATXN2 intermediate repeat expansionsQ52146520
MTHFSD and DDX58 are novel RNA-binding proteins abnormally regulated in amyotrophic lateral sclerosisQ52147259
RBMS3 is a tumor suppressor gene that acts as a favorable prognostic marker in lung squamous cell carcinomaQ53644101
P433issue2
P921main subjectartificial intelligenceQ11660
IBMQ37156
amyotrophic lateral sclerosisQ206901
neurodegenerationQ1755122
P304page(s)227-247
P577publication date2017-11-13
P1433published inActa NeuropathologicaQ343168
P1476titleArtificial intelligence in neurodegenerative disease research: use of IBM Watson to identify additional RNA-binding proteins altered in amyotrophic lateral sclerosis
P478volume135

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cites work (P2860)
Q114871132Application of Artificial Intelligence in Discovery and Development of Anticancer and Antidiabetic Therapeutic Agents
Q97569125Applications of machine learning to diagnosis and treatment of neurodegenerative diseases
Q89704289Artificial intelligence in drug development: clinical pharmacologist perspective
Q92641592Cross-sectional and longitudinal measures of chitinase proteins in amyotrophic lateral sclerosis and expression of CHI3L1 in activated astrocytes
Q64110314Developments in Transduction, Connectivity and AI/Machine Learning for Point-of-Care Testing
Q83232835Glycolysis upregulation is neuroprotective as a compensatory mechanism in ALS
Q64237309Heterogeneous nuclear ribonucleoproteins R and Q accumulate in pathological inclusions in FTLD-FUS
Q58713479Heteromeric RNP Assembly at LINEs Controls Lineage-Specific RNA Processing
Q57460087Literature-based automated discovery of tumor suppressor p53 phosphorylation and inhibition by NEK2
Q64087673Machine Learning in Amyotrophic Lateral Sclerosis: Achievements, Pitfalls, and Future Directions
Q62488882Physician Confidence in Artificial Intelligence: An Online Mobile Survey
Q92634114Splicing Players Are Differently Expressed in Sporadic Amyotrophic Lateral Sclerosis Molecular Clusters and Brain Regions