Protein folding transition path times from single molecule FRET.

scientific article published on 25 October 2017

Protein folding transition path times from single molecule FRET. is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1016/J.SBI.2017.10.007
P932PMC publication ID5826754
P698PubMed publication ID29080467

P50authorWilliam A. EatonQ15854629
Hoi Sung ChungQ58667712
P2860cites workEnergy transfer: a spectroscopic rulerQ24618609
A designed protein as experimental model of primordial foldingQ24648966
Assessing the accuracy of physical models used in protein-folding simulations: quantitative evidence from long molecular dynamics simulationsQ26822885
Ultra-stable organic fluorophores for single-molecule researchQ26858810
Mitochondrial heat-shock protein hsp60 is essential for assembly of proteins imported into yeast mitochondriaQ27933539
When fast is better: protein folding fundamentals and mechanisms from ultrafast approachesQ28080003
Intermediates in the folding reactions of small proteinsQ28249972
The folding of an enzyme. I. Theory of protein engineering analysis of stability and pathway of protein foldingQ28306201
Funnels, pathways, and the energy landscape of protein folding: a synthesisQ29617521
Free Energy Surfaces from Single-Distance InformationQ59332525
Single-Molecule Measurement of Protein Folding KineticsQ59332599
Reduction of All-Atom Protein Folding Dynamics to One-Dimensional DiffusionQ60490603
Observation of protein folding/unfolding dynamics of ubiquitin trapped in agarose gel by single-molecule FRETQ61454058
Domain-specific folding kinetics of staphylococcal nuclease observed through single-molecule FRET in a microfluidic mixerQ82566213
Simulation of fluorescence resonance energy transfer experiments: effect of the dyes on protein foldingQ83585357
Structural origin of slow diffusion in protein foldingQ86258320
Microsecond protein folding events revealed by time-resolved fluorescence resonance energy transfer in a microfluidic mixerQ87238557
A photoprotection strategy for microsecond-resolution single-molecule fluorescence spectroscopy.Q30155896
Experimental identification of downhill protein folding.Q30332312
Evidence of an intermediate and parallel pathways in protein unfolding from single-molecule fluorescence.Q30369625
Fast kinetics and mechanisms in protein foldingQ30902064
Deciphering Kinetic Information from Single-Molecule FRET Data That Show Slow TransitionsQ30954312
Effect of flexibility and cis residues in single-molecule FRET studies of polyprolineQ31137335
Estimating free-energy barrier heights for an ultrafast folding protein from calorimetric and kinetic dataQ31146863
The fast protein folding problemQ33199237
Chemical, physical, and theoretical kinetics of an ultrafast folding proteinQ33387166
Direct observation of barrier-limited folding of BBL by single-molecule fluorescence resonance energy transferQ33508761
Single-molecule fluorescence probes dynamics of barrier crossingQ33565764
Microsecond barrier-limited chain collapse observed by time-resolved FRET and SAXS.Q33566265
Decoding the pattern of photon colors in single-molecule FRET.Q33573051
Extracting rate coefficients from single-molecule photon trajectories and FRET efficiency histograms for a fast-folding protein.Q33590034
Searching for "downhill scenarios" in protein foldingQ33642032
Polyproline and the "spectroscopic ruler" revisited with single-molecule fluorescence.Q33863222
Molecular origins of internal friction effects on protein-folding ratesQ34083277
Fast single-molecule FRET spectroscopy: theory and experimentQ34135228
How fast-folding proteins foldQ34228223
The protein folding 'speed limit'.Q34315486
Two-state folding observed in individual protein moleculesQ34366478
Single-molecule fluorescence resonance energy transferQ34370614
Femtomole mixer for microsecond kinetic studies of protein foldingQ34478059
Atom-by-atom analysis of global downhill protein foldingQ34541834
Frustration in biomoleculesQ34635987
Folding of chymotrypsin inhibitor 2. 1. Evidence for a two-state transitionQ34968585
Accuracy of maximum likelihood estimates of a two-state model in single-molecule FRET.Q34978548
Dependence of internal friction on folding mechanismQ35233778
A simple model for calculating the kinetics of protein folding from three-dimensional structuresQ35647438
Exploring one-state downhill protein folding in single moleculesQ35657817
Theory of protein foldingQ35753216
Nucleosome Core Particle Disassembly and Assembly Kinetics Studied Using Single-Molecule Fluorescence.Q35816093
Structural Determinants of Misfolding in Multidomain ProteinsQ36013275
Transient misfolding dominates multidomain protein foldingQ36320489
Protein folding thermodynamics and dynamics: where physics, chemistry, and biology meetQ36472755
Fast events in protein folding initiated by nanosecond laser photolysisQ36730678
Microscopic interpretation of folding ϕ-values using the transition path ensembleQ36742665
Observation of strange kinetics in protein foldingQ37194472
Comparing a simple theoretical model for protein folding with all-atom molecular dynamics simulationsQ37276465
Native contacts determine protein folding mechanisms in atomistic simulationsQ37276492
Use of protein engineering techniques to elucidate protein folding pathwaysQ37361848
Single-molecule fluorescence experiments determine protein folding transition path timesQ37425996
Measuring ultrafast protein folding rates from photon-by-photon analysis of single molecule fluorescence trajectoriesQ37483238
Theoretical perspectives on protein foldingQ37700641
To milliseconds and beyond: challenges in the simulation of protein foldingQ38067181
Where the complex things are: single molecule and ensemble spectroscopic investigations of protein folding dynamics.Q38674696
Biophysical Insights from Temperature-Dependent Single-Molecule Förster Resonance Energy TransferQ38842257
Reconciling transition path time and rate measurements in reactions with large entropic barriersQ38947835
Transition path time distribution and the transition path free energy barrierQ39306875
Protein folding stability and dynamics imaged in a living cellQ39734023
Folding of Protein L with Implications for Collapse in the Denatured State EnsembleQ40032575
A Method for Extracting the Free Energy Surface and Conformational Dynamics of Fast-Folding Proteins from Single Molecule Photon TrajectoriesQ40924914
Structure-Based Prediction of Protein-Folding Transition PathsQ41059544
The case for defined protein folding pathways.Q41293309
Protein folding intermediates: native-state hydrogen exchangeQ42322493
How robust are protein folding simulations with respect to force field parameterization?Q42853031
Two-dimensional fluorescence resonance energy transfer as a probe for protein folding: a theoretical studyQ44323301
Microfluidic mixer designed for performing single-molecule kinetics with confocal detection on timescales from milliseconds to minutesQ44589111
Ensemble and single-molecule detected time-resolved FRET methods in studies of protein conformations and dynamicsQ44659935
An instrument for fast acquisition of fluorescence decay curves at picosecond resolution designed for "double kinetics" experiments: application to fluorescence resonance excitation energy transfer study of protein folding.Q45905164
Oligomerization of the tetramerization domain of p53 probed by two- and three-color single-molecule FRET.Q46328122
Fast Folding Dynamics of an Intermediate State in RNase H Measured by Single-Molecule FRET.Q46613193
Transition path times reveal memory effects and anomalous diffusion in the dynamics of protein folding.Q47424409
Theory, simulations, and experiments show that proteins fold by multiple pathwaysQ47583524
Clash between energy landscape theory and foldon-dependent protein foldingQ48023722
A harmonic transition state approximation for the duration of reactive events in complex molecular rearrangementsQ48194308
Rapid Microfluidic Double-Jump Mixing Device for Single-Molecule SpectroscopyQ48296310
The mean shape of transition and first-passage paths.Q50754935
From transition paths to transition states and rate coefficients.Q50996055
Generating transition paths by Langevin bridges.Q51571577
Transition-event durations in one-dimensional activated processes.Q51921391
Direct observation of transition paths during the folding of proteins and nucleic acids.Q53112464
Analysis of Fluorescence Lifetime and Energy Transfer Efficiency in Single-Molecule Photon Trajectories of Fast-Folding Proteins.Q53198205
Testing Landscape Theory for Biomolecular Processes with Single Molecule Fluorescence Spectroscopy.Q53423109
GroE heat-shock proteins promote assembly of foreign prokaryotic ribulose bisphosphate carboxylase oligomers in Escherichia coli.Q54734978
Single-Molecule FRET Spectroscopy and the Polymer Physics of Unfolded and Intrinsically Disordered ProteinsQ59332370
P921main subjectprotein foldingQ847556
P304page(s)30-39
P577publication date2017-10-25
P1433published inCurrent Opinion in Structural BiologyQ15758416
P1476titleProtein folding transition path times from single molecule FRET.
P478volume48

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cites work (P2860)
Q55044028Communication: Transition-path velocity as an experimental measure of barrier crossing dynamics.
Q58568463Diffusion-limited association of disordered protein by non-native electrostatic interactions
Q96136595Direct detection of molecular intermediates from first-passage times
Q64936791Exact Solutions for Distributions of First-Passage, Direct-Transit, and Looping Times in Symmetric Cusp Potential Barriers and Wells.
Q97069716Fast three-color single-molecule FRET using statistical inference
Q59600425Heterogeneity in the Folding of Villin Headpiece Subdomain HP36
Q92885390Measuring the average shape of transition paths during the folding of a single biological molecule
Q64068092Melting Down Protein Stability: PAPS Synthase 2 in Patients and in a Cellular Environment
Q56983695Peptide and Protein Structure Prediction with a Simplified Continuum Solvent Model
Q58568515Transition path times of coupled folding and binding reveal the formation of an encounter complex
Q92986402Ultrafast folding kinetics of WW domains reveal how the amino acid sequence determines the speed limit to protein folding

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