Epigenetic interactions between Arabidopsis transgenes: characterization in light of transgene integration sites

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Epigenetic interactions between Arabidopsis transgenes: characterization in light of transgene integration sites is …
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scholarly articleQ13442814

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P6179Dimensions Publication ID1001263932
P356DOI10.1023/A:1023941123149
P698PubMed publication ID12825701

P2093author name stringAlbrecht G von Arnim
Huaxia Qin
Yunzhou Dong
P2860cites workEpigenetic history of an Arabidopsis trans-silencer locus and a test for relay of trans-silencing activityQ24795500
A species of small antisense RNA in posttranscriptional gene silencing in plantsQ28146107
HC-Pro suppression of transgene silencing eliminates the small RNAs but not transgene methylation or the mobile signalQ28360377
Structural features and methylation patterns associated with paramutation at the r1 locus of Zea maysQ28365584
Polyploidy induces centromere associationQ28756053
Release from post-transcriptional gene silencing by cell proliferation in transgenic tobacco plants: possible mechanism for noninheritance of the silencingQ33336812
Position effects and epigenetic silencing of plant transgenesQ33538759
Making noise about silence: repression of repeated genes in animalsQ33885057
Total silencing by intron-spliced hairpin RNAsQ33919827
Suppression of beta-1,3-glucanase transgene expression in homozygous plantsQ33938062
RNA-directed transcriptional gene silencing in plants can be inherited independently of the RNA trigger and requires Met1 for maintenanceQ33948674
Paramutation in maizeQ34041187
RNA-directed DNA methylation.Q34041209
RNA degradation and models for post-transcriptional gene-silencingQ34041236
RNA interference--2001.Q34174586
A vicious cycle: RNA silencing and DNA methylation in plantsQ34340509
Homology-dependent gene silencing mechanisms in fungiQ34360793
Paramutation of the r1 locus of maize is associated with increased cytosine methylation.Q34604031
The structure and paramutagenicity of the R-marbled haplotype of Zea maysQ34607872
Paramutation and related allelic interactionsQ34742614
Repressors of photomorphogenesis.Q34840599
Transgene integration into the same chromosome location can produce alleles that express at a predictable level, or alleles that are differentially silencedQ35207298
Identification of plant genetic loci involved in a posttranscriptional mechanism for meiotically reversible transgene silencingQ35484440
Differential chromatin structure within a tandem array 100 kb upstream of the maize b1 locus is associated with paramutationQ35780093
RIGS (repeat-induced gene silencing) in Arabidopsis is transcriptional and alters chromatin configurationQ37300904
A change of ploidy can modify epigenetic silencingQ37489046
Flank matrix attachment regions (MARs) from chicken, bean, yeast or tobacco do not prevent homology-dependent trans-silencing in transgenic tobacco plants.Q38501775
Position-dependent methylation and transcriptional silencing of transgenes in inverted T-DNA repeats: implications for posttranscriptional silencing of homologous host genes in plantsQ39576348
Analyses of single-copy Arabidopsis T-DNA-transformed lines show that the presence of vector backbone sequences, short inverted repeats and DNA methylation is not sufficient or necessary for the induction of transgene silencingQ39687212
Transcriptional silencing and promoter methylation triggered by double-stranded RNAQ40370869
Epigenetic phenomena: paramutation and gene silencing in plantsQ41110765
Production of aberrant promoter transcripts contributes to methylation and silencing of unlinked homologous promoters in transQ41838012
Transgene-induced silencing identifies sequences involved in the establishment of paramutation of the maize p1 geneQ42500534
Assembly of two transgenes in an artificial chromatin domain gives highly coordinated expression in tobaccoQ42535738
Transcriptional and posttranscriptional gene silencing are mechanistically relatedQ43574514
Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylationQ43604842
Role of short RNAs in gene silencingQ43660302
Nuclear transport of plant potyviral proteinsQ43765680
Transposon-mediated single-copy gene delivery leads to increased transgene expression stability in barley.Q46009179
Chalcone synthase cosuppression phenotypes in petunia flowers: comparison of sense vs. antisense constructs and single-copy vs. complex T-DNA sequencesQ46126682
Maintenance of genomic methylation requires a SWI2/SNF2-like proteinQ47964889
Molecular and cytogenetic characterization of a transgene locus that induces silencing and methylation of homologous promoters in transQ47981015
Cloning vectors for the expression of green fluorescent protein fusion proteins in transgenic plantsQ48001365
Chromosomal imprinting in plantsQ48018563
Molecular and cytogenetic analyses of stably and unstably expressed transgene loci in tobaccoQ48046444
A repetitive DNA fragment carrying a hot spot for de novo DNA methylation enhances expression variegation in tobacco and petuniaQ48068838
Overexpression of Arabidopsis COP1 results in partial suppression of light-mediated development: evidence for a light-inactivable repressor of photomorphogenesis.Q50768693
Modular domain structure of Arabidopsis COP1. Reconstitution of activity by fragment complementation and mutational analysis of a nuclear localization signal in planta.Q52162802
Listening to the silent genes: transgene silencing, gene regulation and pathogen control.Q52174868
A Transcriptionally Active State Is Required for Post-Transcriptional Silencing (Cosuppression) of Nitrate Reductase Host Genes and Transgenes.Q52547403
Conspiracy of silence among repeated transgenes.Q52565473
Cytosine methylation at CG and CNG sites is not a prerequisite for the initiation of transcriptional gene silencing in plants, but it is required for its maintenance.Q54124208
Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR.Q54164416
Do unintended antisense transcripts contribute to sense cosuppression in plants?Q59645670
Homology-based control of gene expression patterns in transgenic petunia flowersQ59645682
The methylation patterns of chromosomal integration regions influence gene activity of transferred DNA in Petunia hybridaQ67512350
Gene silencing mediated by promoter homology occurs at the level of transcription and results in meiotically heritable alterations in methylation and gene activityQ71566184
Light inactivation of Arabidopsis photomorphogenic repressor COP1 involves a cell-specific regulation of its nucleocytoplasmic partitioningQ71988136
Transgene copy number can be positively or negatively associated with transgene expressionQ72068500
The FUSCA genes of Arabidopsis: negative regulators of light responsesQ72123896
Differences in DNA-methylation are associated with a paramutation phenomenon in transgenic petuniaQ72556731
Nucleolar dominance and silencing of transcriptionQ73185401
High-efficiency silencing of a beta-glucuronidase gene in rice is correlated with repetitive transgene structure but is independent of DNA methylationQ74192386
Discrete domains mediate the light-responsive nuclear and cytoplasmic localization of Arabidopsis COP1Q74595680
Arabidopsis mutants impaired in cosuppressionQ77374093
An inverted repeat triggers cytosine methylation of identical sequences in ArabidopsisQ77406653
A branched pathway for transgene-induced RNA silencing in plantsQ77984288
(TRANS)GENE SILENCING IN PLANTS: How Many Mechanisms?Q79759902
Transcriptional and posttranscriptional plant gene silencing in response to a pathogenQ95431973
P433issue1
P304page(s)217-231
P577publication date2003-05-01
P1433published inPlant Molecular BiologyQ15761850
P1476titleEpigenetic interactions between Arabidopsis transgenes: characterization in light of transgene integration sites
P478volume52

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cites work (P2860)
Q46985617A cluster of disease resistance genes in Arabidopsis is coordinately regulated by transcriptional activation and RNA silencing
Q36498566Allelic mutant series reveal distinct functions for Arabidopsis cycloartenol synthase 1 in cell viability and plastid biogenesis
Q80103247An inverted repeat transgene with a structure that cannot generate double-stranded RNA, suffers silencing independent of DNA methylation
Q38971193Challenges and perspectives in commercializing plastid transformation technology.
Q82448620Efficiency of transcriptional gene silencing of GBSSI in potato depends on the promoter region that is used in an inverted repeat
Q51172770Efficient screening of transgenic plant lines for ecological research.
Q24795500Epigenetic history of an Arabidopsis trans-silencer locus and a test for relay of trans-silencing activity
Q54372299Greenhouse and field cultivations of antigen-expressing potatoes focusing on the variability in plant constituents and antigen expression.
Q34803643Progressive 35S promoter methylation increases rapidly during vegetative development in transgenic Nicotiana attenuata plants
Q37029406RNA silencing movement in plants
Q34645454The distribution of transgene insertion sites in barley determined by physical and genetic mapping
Q34169910Transgene silencing and transgene-derived siRNA production in tobacco plants homozygous for an introduced AtMYB90 construct
Q45188219Unintended consequences of plant transformation: a molecular insight.
Q36315724Virp1 is a host protein with a major role in Potato spindle tuber viroid infection in Nicotiana plants

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