MemBuilder: a web-based graphical interface to build heterogeneously mixed membrane bilayers for the GROMACS biomolecular simulation program.

scientific article published on 22 November 2013

MemBuilder: a web-based graphical interface to build heterogeneously mixed membrane bilayers for the GROMACS biomolecular simulation program. is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/bioinformatics/GhahremanpourAAZS14
P356DOI10.1093/BIOINFORMATICS/BTT680
P698PubMed publication ID24273238
P5875ResearchGate publication ID258856866

P50authorDavid van der SpoelQ47087753
P2093author name stringJin Zhang
Seyed Shahriar Arab
Mohammad Mehdi Ghahremanpour
Saman Biook Aghazadeh
P2860cites workGROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkitQ29615867
A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6Q29617517
Insertion and assembly of membrane proteins via simulation.Q30159902
How membranes shape protein structure.Q30328356
The progress of membrane protein structure determinationQ30342003
An Extension and Further Validation of an All-Atomistic Force Field for Biological Membranes.Q30381649
Another Piece of the Membrane Puzzle: Extending Slipids FurtherQ33361953
How proteins move lipids and lipids move proteins.Q34297097
Derivation and systematic validation of a refined all-atom force field for phosphatidylcholine lipidsQ35873948
Setting up and running molecular dynamics simulations of membrane proteinsQ36762780
CHARMM-GUI Membrane Builder for mixed bilayers and its application to yeast membranesQ37263413
Cholesterol packing around lipids with saturated and unsaturated chains: a simulation studyQ37336674
Lipidbook: a public repository for force-field parameters used in membrane simulations.Q38371294
Interaction of Piscidin-1 with zwitterionic versus anionic membranes: a comparative molecular dynamics study.Q39522520
Membrane AsymmetryQ39859559
A computer perspective of membranes: molecular dynamics studies of lipid bilayer systemsQ41725777
An improved united atom force field for simulation of mixed lipid bilayers.Q51798189
Large influence of cholesterol on solute partitioning into lipid membranes.Q54268862
P433issue3
P407language of work or nameEnglishQ1860
P921main subjectGROMACSQ905302
P6104maintained by WikiProjectWikiProject SoftwareQ15659621
P304page(s)439-441
P577publication date2013-11-22
P1433published inBioinformaticsQ4914910
P1476titleMemBuilder: a web-based graphical interface to build heterogeneously mixed membrane bilayers for the GROMACS biomolecular simulation program.
P478volume30

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cites work (P2860)
Q91598302Anomalous behavior of membrane fluidity caused by copper-copper bond coupled phospholipids
Q64989782BUMPy: A Model-Independent Tool for Constructing Lipid Bilayers of Varying Curvature and Composition.
Q35636233Binding of the Antagonist Caffeine to the Human Adenosine Receptor hA2AR in Nearly Physiological Conditions
Q36539936CHARMM-GUI PDB manipulator for advanced modeling and simulations of proteins containing nonstandard residues.
Q38851972Challenges in structural approaches to cell modeling
Q90131372Computer simulations of protein-membrane systems
Q33601918Computing Spatiotemporal Heat Maps of Lipid Electropore Formation: A Statistical Approach
Q27323329GPCR-ModSim: A comprehensive web based solution for modeling G-protein coupled receptors
Q51731717Length-dependent manifestation of vibration mode regulates a specific intermediate morphology of Aβ17-42 in different environments.
Q40957842MemGen: a general web server for the setup of lipid membrane simulation systems
Q27335132Membrane Mediated Antimicrobial and Antitumor Activity of Cathelicidin 6: Structural Insights from Molecular Dynamics Simulation on Multi-Microsecond Scale
Q41583418Micelle Maker: An Online Tool for Generating Equilibrated Micelles as Direct Input for Molecular Dynamics Simulations
Q26798390Molecular Simulations of Gram-Negative Bacterial Membranes: A Vignette of Some Recent Successes
Q26772040Molecular dynamics simulations of biological membranes and membrane proteins using enhanced conformational sampling algorithms
Q47348671Opportunities and Challenges in the Discovery of Allosteric Modulators of GPCRs

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